TCONS_00066879-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066879-protein
Unique NameTCONS_00066879-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length182

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066879-protein ID=TCONS_00066879-protein|Name=TCONS_00066879-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MTSIIRFTPLSGAQDEKPLCYLLQVDEFRFLLDCGWDENLDLEVVENIRK
HLHSIDAVLLSHPDIYHVGALPYLVGKCGLNCPIYATIPVHKMGQMFVYD
FYQSHHNYKNFEHYTLDDVDAAFDKIEQLKYSQHVSLKGRGHGLSITPYL
AGHMIGGTMWKIKQEGEEDIIYAVDFNHKKEM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041821XLOC_041821Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066879TCONS_00066879Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001279Metallo-B-lactamas
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001279Metallo-beta-lactamaseGENE3D3.60.15.10coord: 2..182
e-value: 1.6E-30
score: 105.4
IPR001279Metallo-beta-lactamasePFAMPF16661Lactamase_B_6coord: 22..181
e-value: 2.3E-61
score: 206.5
IPR001279Metallo-beta-lactamaseSUPERFAMILY56281Metallo-hydrolase/oxidoreductasecoord: 4..181

Blast
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BLAST of TCONS_00066879-protein vs. Swiss-Prot (Human)
Match: CPSF2 (Cleavage and polyadenylation specificity factor subunit 2 OS=Homo sapiens GN=CPSF2 PE=1 SV=2)

HSP 1 Score: 293.123 bits (749), Expect = 1.706e-95
Identity = 132/182 (72.53%), Postives = 160/182 (87.91%), Query Frame = 0 
Query:    1 MTSIIRFTPLSGAQDEKPLCYLLQVDEFRFLLDCGWDENLDLEVVENIRKHLHSIDAVLLSHPDIYHVGALPYLVGKCGLNCPIYATIPVHKMGQMFVYDFYQSHHNYKNFEHYTLDDVDAAFDKIEQLKYSQHVSLKGRGHGLSITPYLAGHMIGGTMWKIKQEGEEDIIYAVDFNHKKEM 182
            MTSII+ T LSG Q+E  LCYLLQVDEFRFLLDCGWDE+  +++++++RKH+H IDAVLLSHPD  H+GALPY VGK GLNC IYATIPV+KMGQMF+YD YQS HN ++F  +TLDDVDAAFDKI+QLK+SQ V+LKG+GHGLSITP  AGHMIGGT+WKI ++GEE+I+YAVDFNHK+E+
Sbjct:    1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLLSHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREI 182
The following BLAST results are available for this feature:
BLAST of TCONS_00066879-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CPSF21.706e-9572.53Cleavage and polyadenylation specificity factor su... [more]
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