TCONS_00066817-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066817-protein
Unique NameTCONS_00066817-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066817-protein ID=TCONS_00066817-protein|Name=TCONS_00066817-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
MTEEIIDFENARLKMKKWREDIDRNSEEIVEYGECLIAEYASKLGDELWV
LYEQVFVAALDCYRIDLAEECLAALHKQFPKSKRVFKLQGMYHEARQQYS
KAEAVYTKMLEDEPANLVAKKRLIAMKKAQNKYEETIQELNDYLKDFMAD
QEAWMELSELYIHQQEFAKAAFCMEELILSHPHNHLYHQRYAEIHYTIGT
SESMEKAKKYFAQALKLDPGNARALYGLYLAASNSVQGKSNTSSKKKSIN
LSQWTANKIVDMYSMQPNENQRKNMETMFEDLQISLPSNIPE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041780XLOC_041780Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066817TCONS_00066817Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 8..28
NoneNo IPR availableCOILSCoilCoilcoord: 126..146
NoneNo IPR availablePFAMPF13432TPR_16coord: 205..233
e-value: 0.0048
score: 17.4
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 47..164
e-value: 4.8E-14
score: 51.9
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 165..192
e-value: 4.4E-5
score: 22.9
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 193..281
e-value: 4.1E-6
score: 26.3
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 77..230
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 83..221
score: 17.076

Blast
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BLAST of TCONS_00066817-protein vs. Swiss-Prot (Human)
Match: EMC2 (ER membrane protein complex subunit 2 OS=Homo sapiens GN=EMC2 PE=1 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 5.056e-96
Identity = 145/286 (50.70%), Postives = 206/286 (72.03%), Query Frame = 0 
Query:    6 IDFENARLKMKKWREDIDRNSEEIVEYGECLIAEYASKLGDELWVLYEQVFVAALDCYRIDLAEECLAALHKQFPKSKRVFKLQGMYHEARQQYSKAEAVYTKMLEDEPANLVAKKRLIAMKKAQNKYEETIQELNDYLKDFMADQEAWMELSELYIHQQEFAKAAFCMEELILSHPHNHLYHQRYAEIHYTIGTSESMEKAKKYFAQALKLDPGNARALYGLYLAASN-SVQGKSNTSSKKKSINLSQWTANKIVDMY-----SMQPNENQRKNMETMFEDLQIS 285
            + +E  R KM+KWRE+  RNSE+IVE GE LI EYASKLGD++W++YEQV +AALD  R DLA  CL  L +QFP S RV +L GM  EA ++Y  A  +Y ++L+++P N  A+KR IA++KAQ K  E I+ELN+YL+ F+ DQEAW EL+ELYI++ ++AKAAFC+EEL++++PHNHLY Q+YAE+ YT G  E++E ++KYFAQALKL+  N RAL+GLY++AS+ +   K++  +KK ++  + W A++I   Y     S +  +   K +E M E LQI+
Sbjct:   10 VTWEEMRDKMRKWREENSRNSEQIVEVGEELINEYASKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPGSHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELNEYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSASHIASNPKASAKTKKDNMKYASWAASQINRAYQFAGRSKKETKYSLKAVEDMLETLQIT 295
The following BLAST results are available for this feature:
BLAST of TCONS_00066817-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EMC25.056e-9650.70ER membrane protein complex subunit 2 OS=Homo sapi... [more]
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