TCONS_00066817 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066817
Unique NameTCONS_00066817
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1516

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066817 ID=TCONS_00066817|Name=TCONS_00066817|organism=Clytia hemisphaerica|type=transcript|length=1516bp
CTTTTCTGAGTGCTACAAACTTCTTTAGTTCCCTAAATCTGAGTGTCTAC
TgaaaaaaagagatttgttgCAACTTTTgtgacaaatttaaaaaaataaa
cgaTGTAGAATGAAACcgttttcatattttcatatatcgcaaataaaaat
aatagatttttaaatcTAGACAATTAGatctggatttatttttttgcaac
aagcaaaatttaaatttttcattttagtaaTAGTGtcaaacttatttttt
ccagTAGACACCCAGGTTAATTATCCAAGAGCGTATCatatctaaaaaat
aataataataagttCCAAAAATTGAGGTAAATGTCTAAGGTTTACAGTAA
TTATAAATTAATCTAGAGAAGTGAGTATTCCTAAGGAGTATCATTATAAA
CGGCTGCAATCTGCATTCCTTTTAATCGATTGAATATTTCGAATTCACTC
ACTCAAGATTATTTTCGAATAATCCAGTATTTATGTGAAATAAAGGAAAG
AAAGCATTCAATTTGATGAAACTAAAACTAGTAAATTAAAACTATATAAA
TTTATTATTCAGGTATATTAGAAGGTAAGCTAATTTGTAAGTCCTCAAAC
ATGGTCTCCATATTCTTACGTTGATTCTCATTTGGCTGCATACTATACAT
ATCAACTATTTTATTAGCAGTCCACTGAGACAAAttaatacttttctttt
tagaGCTTGTATTAGATTTCCCTTGCACTGAATTAGAAGCTGCTAAGTAA
AGACCATACAAAGCTCTTGCATTTCCCGGATCTAATTTCAAAGCTTGGGC
AAAATACTTTTTGGCTTTTTCCATGGATTCTGATGTACCAATGGTGTAAT
GAATTTCGGCATATCGTTGGTGATATAAGTGGTTGTGTGGATGTGACAAA
ATGAGCTCTTCCATACAAAATGCTGCTTTGGCAAACTCTTGTTGATGGAT
GTAAAGCTCTGATAATTCCATCCATGCTTCTTGGTCTGCCATGAAGTCTT
TTAAATAATCATTCAATTCCTGGATGGTTTCTTCGTATTTATTTTGTGCC
TTCTTCATAGCAATCAAACGCTTCTTAGCAACTAAATTGGCTGGCTCATC
TTCGAGCATCTTGGTGTAAACGGCTTCTGCTTTACTATATTGCTGTCTTG
CTTCATGGTACATCCCTTGTAATTTAAATACACGCTTGCTTTTAGGGAAT
TGTTTATGAAGGGCTGCTAAGCATTCTTCTGCCAGGTCAATGCGATAGCA
ATCTAACGCAGCTACAAACACCTGCTCATATAAGACCCAGAGTTCATCCC
CTAGCTTGCTAGCATATTCTGCAATCAAGCATTCTCCATATTCAACAATC
TCCTCACTGTTTCTGTCAATATCTTCCCtccatttcttcattttcagacG
AGCATTCTCAAAATCAATGATTTCTTCAGTCATATTTATTTaacttatga
tttttttcagctttttaaaaagaggaaTAAAAGGTCACTTAATTAAGTAT
CCACTTTCGCGCAAAA
Run BLAST on NCBI

protein sequence of TCONS_00066817-protein

>TCONS_00066817-protein ID=TCONS_00066817-protein|Name=TCONS_00066817-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
MTEEIIDFENARLKMKKWREDIDRNSEEIVEYGECLIAEYASKLGDELWV
LYEQVFVAALDCYRIDLAEECLAALHKQFPKSKRVFKLQGMYHEARQQYS
KAEAVYTKMLEDEPANLVAKKRLIAMKKAQNKYEETIQELNDYLKDFMAD
QEAWMELSELYIHQQEFAKAAFCMEELILSHPHNHLYHQRYAEIHYTIGT
SESMEKAKKYFAQALKLDPGNARALYGLYLAASNSVQGKSNTSSKKKSIN
LSQWTANKIVDMYSMQPNENQRKNMETMFEDLQISLPSNIPE
Run BLAST on NCBI

transcript from alignment at scaffold_46:64519..66034

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066817 ID=TCONS_00066817|Name=TCONS_00066817|organism=Clytia hemisphaerica|type=transcript|length=1516bp|location=Sequence derived from alignment at scaffold_46:64519..66034 (Clytia hemisphaerica)
TTTTGCGCGAAAGTGGATACTTAATTAAGTGACCTTTTAttcctcttttt
aaaaagctgaaaaaaatcataagttAAATAAATATGACTGAAGAAATCAT
TGATTTTGAGAATGCTCgtctgaaaatgaagaaatggaGGGAAGATATTG
ACAGAAACAGTGAGGAGATTGTTGAATATGGAGAATGCTTGATTGCAGAA
TATGCTAGCAAGCTAGGGGATGAACTCTGGGTCTTATATGAGCAGGTGTT
TGTAGCTGCGTTAGATTGCTATCGCATTGACCTGGCAGAAGAATGCTTAG
CAGCCCTTCATAAACAATTCCCTAAAAGCAAGCGTGTATTTAAATTACAA
GGGATGTACCATGAAGCAAGACAGCAATATAGTAAAGCAGAAGCCGTTTA
CACCAAGATGCTCGAAGATGAGCCAGCCAATTTAGTTGCTAAGAAGCGTT
TGATTGCTATGAAGAAGGCACAAAATAAATACGAAGAAACCATCCAGGAA
TTGAATGATTATTTAAAAGACTTCATGGCAGACCAAGAAGCATGGATGGA
ATTATCAGAGCTTTACATCCATCAACAAGAGTTTGCCAAAGCAGCATTTT
GTATGGAAGAGCTCATTTTGTCACATCCACACAACCACTTATATCACCAA
CGATATGCCGAAATTCATTACACCATTGGTACATCAGAATCCATGGAAAA
AGCCAAAAAGTATTTTGCCCAAGCTTTGAAATTAGATCCGGGAAATGCAA
GAGCTTTGTATGGTCTTTACTTAGCAGCTTCTAATTCAGTGCAAGGGAAA
TCTAATACAAGCtctaaaaagaaaagtattaaTTTGTCTCAGTGGACTGC
TAATAAAATAGTTGATATGTATAGTATGCAGCCAAATGAGAATCAACGTA
AGAATATGGAGACCATGTTTGAGGACTTACAAATTAGCTTACCTTCTAAT
ATACCTGAATAATAAATTTATATAGTTTTAATTTACTAGTTTTAGTTTCA
TCAAATTGAATGCTTTCTTTCCTTTATTTCACATAAATACTGGATTATTC
GAAAATAATCTTGAGTGAGTGAATTCGAAATATTCAATCGATTAAAAGGA
ATGCAGATTGCAGCCGTTTATAATGATACTCCTTAGGAATACTCACTTCT
CTAGATTAATTTATAATTACTGTAAACCTTAGACATTTACCTCAATTTTT
GGaacttattattattattttttagatatGATACGCTCTTGGATAATTAA
CCTGGGTGTCTActggaaaaaataagtttgaCACTAttactaaaatgaaa
aatttaaattttgcttgttgcaaaaaaataaatccagatCTAATTGTCTA
gatttaaaaatctattatttttatttgcgatatatgaaaatatgaaaacg
GTTTCATTCTACAtcgtttatttttttaaatttgtcacAAAAGTTGcaac
aaatctctttttttcAGTAGACACTCAGATTTAGGGAACTAAAGAAGTTT
GTAGCACTCAGAAAAG

Coding sequence (CDS) from alignment at scaffold_46:64519..66034

>TCONS_00066817 ID=TCONS_00066817|Name=TCONS_00066817|organism=Clytia hemisphaerica|type=CDS|length=879bp|location=Sequence derived from alignment at scaffold_46:64519..66034 (Clytia hemisphaerica)
ATGACTGAAGAAATCATTGATTTTGAGAATGCTCgtctgaaaatgaagaa
atggaGGGAAGATATTGACAGAAACAGTGAGGAGATTGTTGAATATGGAG
AATGCTTGATTGCAGAATATGCTAGCAAGCTAGGGGATGAACTCTGGGTC
TTATATGAGCAGGTGTTTGTAGCTGCGTTAGATTGCTATCGCATTGACCT
GGCAGAAGAATGCTTAGCAGCCCTTCATAAACAATTCCCTAAAAGCAAGC
GTGTATTTAAATTACAAGGGATGTACCATGAAGCAAGACAGCAATATAGT
AAAGCAGAAGCCGTTTACACCAAGATGCTCGAAGATGAGCCAGCCAATTT
AGTTGCTAAGAAGCGTTTGATTGCTATGAAGAAGGCACAAAATAAATACG
AAGAAACCATCCAGGAATTGAATGATTATTTAAAAGACTTCATGGCAGAC
CAAGAAGCATGGATGGAATTATCAGAGCTTTACATCCATCAACAAGAGTT
TGCCAAAGCAGCATTTTGTATGGAAGAGCTCATTTTGTCACATCCACACA
ACCACTTATATCACCAACGATATGCCGAAATTCATTACACCATTGGTACA
TCAGAATCCATGGAAAAAGCCAAAAAGTATTTTGCCCAAGCTTTGAAATT
AGATCCGGGAAATGCAAGAGCTTTGTATGGTCTTTACTTAGCAGCTTCTA
ATTCAGTGCAAGGGAAATCTAATACAAGCtctaaaaagaaaagtattaaT
TTGTCTCAGTGGACTGCTAATAAAATAGTTGATATGTATAGTATGCAGCC
AAATGAGAATCAACGTAAGAATATGGAGACCATGTTTGAGGACTTACAAA
TTAGCTTACCTTCTAATATACCTGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041780XLOC_041780Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066817-proteinTCONS_00066817-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066817-exon-scaffold_46-1491911889:64519..66034TCONS_00066817-exon-scaffold_46-1491911889:64519..66034Clytia hemisphaericaexon
TCONS_00066817-exon-scaffold_46-1510915933:64519..66034TCONS_00066817-exon-scaffold_46-1510915933:64519..66034Clytia hemisphaericaexon
TCONS_00066817-exon-scaffold_46-1575043694:64519..66034TCONS_00066817-exon-scaffold_46-1575043694:64519..66034Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:64519..66034 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
68.241	65.4076	32.0559	27.4227	34.7023	27.4222	37.5856	38.683	36.324	35.3882	18.4256	16.5595	13.2508	13.7799	17.9259	18.9064	31.1975	23.0163	8.4834	12.1987	19.4474	17.5121	56.1775	51.0452	13.7267	17.2447	21.6623	18.7491	36.2141	41.0403
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00066817 vs. Swiss-Prot (Human)
Match: EMC2 (ER membrane protein complex subunit 2 OS=Homo sapiens GN=EMC2 PE=1 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 8.989e-88
Identity = 145/286 (50.70%), Postives = 206/286 (72.03%), Query Frame = -3 
Query:  579 IDFENARLKMKKWREDIDRNSEEIVEYGECLIAEYASKLGDELWVLYEQVFVAALDCYRIDLAEECLAALHKQFPKSKRVFKLQGMYHEARQQYSKAEAVYTKMLEDEPANLVAKKRLIAMKKAQNKYEETIQELNDYLKDFMADQEAWMELSELYIHQQEFAKAAFCMEELILSHPHNHLYHQRYAEIHYTIGTSESMEKAKKYFAQALKLDPGNARALYGLYLAASN-SVQGXXXXXXXXXSINLSQWTANKIVDMY-----SMQPNENQRKNMETMFEDLQIS 1418
            + +E  R KM+KWRE+  RNSE+IVE GE LI EYASKLGD++W++YEQV +AALD  R DLA  CL  L +QFP S RV +L GM  EA ++Y  A  +Y ++L+++P N  A+KR IA++KAQ K  E I+ELN+YL+ F+ DQEAW EL+ELYI++ ++AKAAFC+EEL++++PHNHLY Q+YAE+ YT G  E++E ++KYFAQALKL+  N RAL+GLY++AS+ +   K++  +KK ++  + W A++I   Y     S +  +   K +E M E LQI+
Sbjct:   10 VTWEEMRDKMRKWREENSRNSEQIVEVGEELINEYASKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPGSHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELNEYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSASHIASNPKASAKTKKDNMKYASWAASQINRAYQFAGRSKKETKYSLKAVEDMLETLQIT 295
The following BLAST results are available for this feature:
BLAST of TCONS_00066817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EMC28.989e-8850.70ER membrane protein complex subunit 2 OS=Homo sapi... [more]
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