Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00066817-protein ID=TCONS_00066817-protein|Name=TCONS_00066817-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
Term Definition
IPR011990 TPR-like_helical_dom IPR013026 TPR-contain_dom
Vocabulary: Molecular Function
Term Definition
GO:0005515 protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0005515 protein binding
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
50 100 150 200 250 Score = Score = Expect = 0.0048 / Score = 17.4 Expect = 4.8E-14 / Score = 51.9 Expect = 4.4E-5 / Score = 22.9 Expect = 4.1E-6 / Score = 26.3 Score = Score = 17.076 Sequence Coil Coil PF13432 G3DSA:1.25.40.10 G3DSA:1.25.40.10 G3DSA:1.25.40.10 SSF48452 PS50293
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 8..28 None No IPR available COILS Coil Coil coord: 126..146 None No IPR available PFAM PF13432 TPR_16 coord: 205..233 IPR011990 Tetratricopeptide-like helical domain GENE3D 1.25.40.10 coord: 47..164 IPR011990 Tetratricopeptide-like helical domain GENE3D 1.25.40.10 coord: 165..192 IPR011990 Tetratricopeptide-like helical domain GENE3D 1.25.40.10 coord: 193..281 IPR011990 Tetratricopeptide-like helical domain SUPERFAMILY 48452 TPR-like coord: 77..230 IPR013026 Tetratricopeptide repeat-containing domain PROSITE PS50293 TPR_REGION coord: 83..221
Blast
BLAST of TCONS_00066817-protein vs. Swiss-Prot (Human)
Match:
EMC2 (ER membrane protein complex subunit 2 OS=Homo sapiens GN=EMC2 PE=1 SV=1)
HSP 1 Score: 284.648 bits (727), Expect = 5.056e-96
Identity = 145/286 (50.70%), Postives = 206/286 (72.03%), Query Frame = 0
Query: 6 IDFENARLKMKKWREDIDRNSEEIVEYGECLIAEYASKLGDELWVLYEQVFVAALDCYRIDLAEECLAALHKQFPKSKRVFKLQGMYHEARQQYSKAEAVYTKMLEDEPANLVAKKRLIAMKKAQNKYEETIQELNDYLKDFMADQEAWMELSELYIHQQEFAKAAFCMEELILSHPHNHLYHQRYAEIHYTIGTSESMEKAKKYFAQALKLDPGNARALYGLYLAASN-SVQGKSNTSSKKKSINLSQWTANKIVDMY-----SMQPNENQRKNMETMFEDLQIS 285
+ +E R KM+KWRE+ RNSE+IVE GE LI EYASKLGD++W++YEQV +AALD R DLA CL L +QFP S RV +L GM EA ++Y A +Y ++L+++P N A+KR IA++KAQ K E I+ELN+YL+ F+ DQEAW EL+ELYI++ ++AKAAFC+EEL++++PHNHLY Q+YAE+ YT G E++E ++KYFAQALKL+ N RAL+GLY++AS+ + K++ +KK ++ + W A++I Y S + + K +E M E LQI+
Sbjct: 10 VTWEEMRDKMRKWREENSRNSEQIVEVGEELINEYASKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPGSHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELNEYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYFAQALKLNNRNMRALFGLYMSASHIASNPKASAKTKKDNMKYASWAASQINRAYQFAGRSKKETKYSLKAVEDMLETLQIT 295
The following BLAST results are available for this feature:
BLAST of TCONS_00066817-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
M T E E I I D F E N A R L K M K K W R E D I D R N S E E I V E Y G E C L I A E Y A S K L G D E L W V L Y E Q V F V A A L D C Y R I D L A E E C L A A L H K Q F P K S K R V F K L Q G M Y H E A R Q Q Y S K A E A V Y T K M L E D E P A N L V A K K R L I A M K K A Q N K Y E E T I Q E L N D Y L K D F M A D Q E A W M E L S E L Y I H Q Q E F A K A A F C M E E L I L S H P H N H L Y H Q R Y A E I H Y T I G T S E S M E K A K K Y F A Q A L K L D P G N A R A L Y G L Y L A A S N S V Q G K S N T S S K K K S I N L S Q W T A N K I V D M Y S M Q P N E N Q R K N M E T M F E D L Q I S L P S N I P E 50 100 150 200 250 Expect = 5.06e-96 / Id = 50.70 Sequence EMC2
Match Name E-value Identity Description
EMC2 5.056e-96 50.70 ER membrane protein complex subunit 2 OS=Homo sapi... [more]
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