TCONS_00066089-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00066089-protein
Unique Name	TCONS_00066089-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	558

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00066089-protein ID=TCONS_00066089-protein|Name=TCONS_00066089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=558bp
MTDINIPGLVSIIVFYLLILLIGVFAAWKKNKATAQAQTTEEETNEVILA
GRNIGMFVGCFTMTATWVGGGYINGTAESVYNDGLVWAQAPWGYATSLSL
GGFFFAKKMREANYITMLDPLQDRYGKIMGAFLYIPAFLGETFWSASILS
ALGATLRVILGLEMNLSVIVSACIAVGYTFFGGLYSVAYTDVVQLGCIAV
GLWLCVPFSLSNDVTTSLSVTKTEWIGHLEGYRVGQWIDYAMLLICGGLP
WQVYFQRVLSSKSAGRAQTLSFVASFGCIAMAIPAVLIGAVAKSADWSQI
QGAIDAGLISNATGKYIITDTRLTLPMVLQYLTPTWVSFIGLGAISAAVM
SSADSSVLSASSMFGHNIYKLIFRQNATANEIIWVIRVGIFVVGALATVV
GLTVESIYALFHLCSDLVFCILFPQLVGAVYIPTVNTYGSIAAYIVGLFL
RCTGGEELINFPPLIKYPFYKNNHQNFPFRTLSMICSFITLVLVSKLFNY
LFDNDILDVEKYDTLGVIERRKKLADKLMRQEKNGIRPQEDIPMKENYRK
YEDSATHC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041379	XLOC_041379	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00066089	TCONS_00066089	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001734	Na/solute_symporter

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006810	transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005215	transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001734	Sodium/solute symporter	PFAM	PF00474	SSF	coord: 48..447 e-value: 2.4E-34 score: 118.8
IPR001734	Sodium/solute symporter	PROSITE	PS50283	NA_SOLUT_SYMP_3	coord: 5..461 score: 41.402
None	No IPR available	CDD	cd11474	SLC5sbd_CHT	coord: 9..495 e-value: 0.0 score: 537.878

Blast

[Close]

BLAST of TCONS_00066089-protein vs. Swiss-Prot (Human)
Match: SC5A7 (High affinity choline transporter 1 OS=Homo sapiens GN=SLC5A7 PE=1 SV=1)

HSP 1 Score: 553.132 bits (1424), Expect = 0.000e+0
Identity = 284/570 (49.82%), Postives = 391/570 (68.60%), Query Frame = 0

Query:    5 NIPGLVSIIVFYLLILLIGVFAAWKKNKATAQAQTTEEETNEVILAGRNIGMFVGCFTMTATWVGGGYINGTAESVY--NDGLVWAQAPWGYATSLSLGGFFFAKKMREANYITMLDPLQDRYGKIMGAFLYIPAFLGETFWSASILSALGATLRVILGLEMNLSVIVSACIAVGYTFFGGLYSVAYTDVVQLGCIAVGLWLCVPFSLSNDVTTSLSVT------KTEWIGHLEGYRVGQWIDYAMLLICGGLPWQVYFQRVLSSKSAGRAQTLSFVASFGCIAMAIPAVLIGAVAKSADWSQIQGAIDAGLISNATGKYIITDTRLTLPMVLQYLTPTWVSFIGLGAISAAVMSSADSSVLSASSMFGHNIYKLIFRQNATANEIIWVIRVGIFVVGALATVVGLTVESIYALFHLCSDLVFCILFPQLVGAVYIPTVNTYGSIAAYIVGLFLRCTGGEELINFPPLIKYP-FYKNN----HQNFPFRTLSMICSFITLVLVSKLFNYLFDNDIL--DVEKYDTLGVIERRKKLADKLMRQEKN-------GIRPQEDIPMKENYRKYE 552
            ++ GL++IIVFYLLILL+G++AAW+    T  + + EE +  +I+ GR+IG+ VG FTMTATWVGGGYINGTAE+VY    GL WAQAP GY+ SL LGG FFAK MR   Y+TMLDP Q  YGK MG  L+IPA +GE FW+A+I SALGAT+ VI+ ++M++SVI+SA IA  YT  GGLYSVAYTDVVQL CI VGLW+ VPF+LS+     +  T      +  W+G ++   V  W+D  +LL+ GG+PWQ YFQRVLSS SA  AQ LSF+A+FGC+ MAIPA+LIGA+  S DW+Q       GL    T +    +  + LP+VLQYL P ++SF GLGA+SAAVMSSADSS+LSASSMF  NIY+L FRQNA+  EI+WV+R+ +FV GA AT + L  +++Y L++L SDLV+ ++FPQL+  +++   NTYG++A Y+ GLFLR TGGE  +   PLI YP +Y ++    +Q FPF+TL+M+ SF+T + +S L  YLF++  L   ++ +D +      + +   ++ + +N        ++P++ + +   +   E
Sbjct:    4 HVEGLIAIIVFYLLILLVGIWAAWR----TKNSGSAEERSEAIIVGGRDIGLLVGGFTMTATWVGGGYINGTAEAVYVPGYGLAWAQAPIGYSLSLILGGLFFAKPMRSKGYVTMLDPFQQIYGKRMGGLLFIPALMGEMFWAAAIFSALGATISVIIDVDMHISVIISALIATLYTLVGGLYSVAYTDVVQLFCIFVGLWISVPFALSHPAVADIGFTAVHAKYQKPWLGTVDSSEVYSWLDSFLLLMLGGIPWQAYFQRVLSSSSATYAQVLSFLAAFGCLVMAIPAILIGAIGASTDWNQTA----YGLPDPKTTE----EADMILPIVLQYLCPVYISFFGLGAVSAAVMSSADSSILSASSMFARNIYQLSFRQNASDKEIVWVMRITVFVFGASATAMALLTKTVYGLWYLSSDLVYIVIFPQLLCVLFVKGTNTYGAVAGYVSGLFLRITGGEPYLYLQPLIFYPGYYPDDNGIYNQKFPFKTLAMVTSFLTNICISYLAKYLFESGTLPPKLDVFDAVVARHSEENMDKTILVKNENIKLDELALVKPRQSMTLSSTFTNKE 561

The following BLAST results are available for this feature:

BLAST of TCONS_00066089-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00066089-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SC5A7	0.000e+0	49.82	High affinity choline transporter 1 OS=Homo sapien...	[more]

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TCONS_00066089-protein (polypeptide) - C. hemisphaerica