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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066089 ID=TCONS_00066089|Name=TCONS_00066089|organism=Clytia hemisphaerica|type=transcript|length=3441bpRun BLAST on NCBI protein sequence of TCONS_00066089-protein >TCONS_00066089-protein ID=TCONS_00066089-protein|Name=TCONS_00066089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=558bp MTDINIPGLVSIIVFYLLILLIGVFAAWKKNKATAQAQTTEEETNEVILARun BLAST on NCBI transcript from alignment at scaffold_450:1..54817+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066089 ID=TCONS_00066089|Name=TCONS_00066089|organism=Clytia hemisphaerica|type=transcript|length=54817bp|location=Sequence derived from alignment at scaffold_450:1..54817+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_450:1..54817+ >TCONS_00066089 ID=TCONS_00066089|Name=TCONS_00066089|organism=Clytia hemisphaerica|type=CDS|length=11739bp|location=Sequence derived from alignment at scaffold_450:1..54817+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066089 vs. Swiss-Prot (Human)
Match: SC5A7 (High affinity choline transporter 1 OS=Homo sapiens GN=SLC5A7 PE=1 SV=1) HSP 1 Score: 502.286 bits (1292), Expect = 6.026e-164 Identity = 282/570 (49.47%), Postives = 390/570 (68.42%), Query Frame = 1
Query: 964 NIPGLVSIIVFYLLILLIGVFAAWXXXXXXXXXXXXXXXXXXVILAGRNIGMFVGCFTMTATWVGGGYINGTAESVY--NDGLVWAQAPWGYATSLSLGGFFFAKKMREANYITMLDPLQDRYGKIMGAFLYIPAFLGETFWSASILSALGATLRVILGLEMNLSVIVSACIAVGYTFFGGLYSVAYTDVVQLGCIAVGLWLCVPFSLSNDVTTSLSVT------KTEWIGHLEGYRVGQWIDYAMLLICGGLPWQVYFQRVLSSKSAGRAQTLSFVASFGCIAMAIPAVLIGAVAKSADWSQIQGAIDAGLISNATGKYIITDTRLTLPMVLQYLTPTWVSFIGLGXXXXXXXXXXXXXXXXXXXMFGHNIYKLIFRQNATANEIIWVIRVGIFVVGALATVVGLTVESIYALFHLCSDLVFCILFPQLVGAVYIPTVNTYGSIAAYIVGLFLRCTGGEELINFPPLIKYP-FYKNN----HQNFPFRTLSMICSFITLVLVSKLFNYLFDNDIL--DVEKYDTLGVIERRKKLADKLMRQEKN-------GIRPQEDIPMKENYRKYE 2607
++ GL++IIVFYLLILL+G++AAW+ + + + +E +I+ GR+IG+ VG FTMTATWVGGGYINGTAE+VY GL WAQAP GY+ SL LGG FFAK MR Y+TMLDP Q YGK MG L+IPA +GE FW+A+I SALGAT+ VI+ ++M++SVI+SA IA YT GGLYSVAYTDVVQL CI VGLW+ VPF+LS+ + T + W+G ++ V W+D +LL+ GG+PWQ YFQRVLSS SA AQ LSF+A+FGC+ MAIPA+LIGA+ S DW+Q GL T + + + LP+VLQYL P ++SF GLGA+SAAVMSSADSS+LSASSMF NIY+L FRQNA+ EI+WV+R+ +FV GA AT + L +++Y L++L SDLV+ ++FPQL+ +++ NTYG++A Y+ GLFLR TGGE + PLI YP +Y ++ +Q FPF+TL+M+ SF+T + +S L YLF++ L ++ +D + + + ++ + +N ++P++ + + + E
Sbjct: 4 HVEGLIAIIVFYLLILLVGIWAAWRTKNSGSAEERSEA----IIVGGRDIGLLVGGFTMTATWVGGGYINGTAEAVYVPGYGLAWAQAPIGYSLSLILGGLFFAKPMRSKGYVTMLDPFQQIYGKRMGGLLFIPALMGEMFWAAAIFSALGATISVIIDVDMHISVIISALIATLYTLVGGLYSVAYTDVVQLFCIFVGLWISVPFALSHPAVADIGFTAVHAKYQKPWLGTVDSSEVYSWLDSFLLLMLGGIPWQAYFQRVLSSSSATYAQVLSFLAAFGCLVMAIPAILIGAIGASTDWNQTA----YGLPDPKTTE----EADMILPIVLQYLCPVYISFFGLGAVSAAVMSSADSSILSASSMFARNIYQLSFRQNASDKEIVWVMRITVFVFGASATAMALLTKTVYGLWYLSSDLVYIVIFPQLLCVLFVKGTNTYGAVAGYVSGLFLRITGGEPYLYLQPLIFYPGYYPDDNGIYNQKFPFKTLAMVTSFLTNICISYLAKYLFESGTLPPKLDVFDAVVARHSEENMDKTILVKNENIKLDELALVKPRQSMTLSSTFTNKE 561 The following BLAST results are available for this feature:
BLAST of TCONS_00066089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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