Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00066089-protein ID=TCONS_00066089-protein|Name=TCONS_00066089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=558bp
MTDINIPGLVSIIVFYLLILLIGVFAAWKKNKATAQAQTTEEETNEVILA
GRNIGMFVGCFTMTATWVGGGYINGTAESVYNDGLVWAQAPWGYATSLSL
GGFFFAKKMREANYITMLDPLQDRYGKIMGAFLYIPAFLGETFWSASILS
ALGATLRVILGLEMNLSVIVSACIAVGYTFFGGLYSVAYTDVVQLGCIAV
GLWLCVPFSLSNDVTTSLSVTKTEWIGHLEGYRVGQWIDYAMLLICGGLP
WQVYFQRVLSSKSAGRAQTLSFVASFGCIAMAIPAVLIGAVAKSADWSQI
QGAIDAGLISNATGKYIITDTRLTLPMVLQYLTPTWVSFIGLGAISAAVM
SSADSSVLSASSMFGHNIYKLIFRQNATANEIIWVIRVGIFVVGALATVV
GLTVESIYALFHLCSDLVFCILFPQLVGAVYIPTVNTYGSIAAYIVGLFL
RCTGGEELINFPPLIKYPFYKNNHQNFPFRTLSMICSFITLVLVSKLFNY
LFDNDILDVEKYDTLGVIERRKKLADKLMRQEKNGIRPQEDIPMKENYRK
YEDSATHC Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001734 | Na/solute_symporter |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006810 | transport |
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005215 | transporter activity |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| biological_process |
GO:0006810 |
transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005215 |
transporter activity |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001734 | Sodium/solute symporter | PFAM | PF00474 | SSF | coord: 48..447
e-value: 2.4E-34
score: 118.8 |
| IPR001734 | Sodium/solute symporter | PROSITE | PS50283 | NA_SOLUT_SYMP_3 | coord: 5..461
score: 41.402 |
| None | No IPR available | CDD | cd11474 | SLC5sbd_CHT | coord: 9..495
e-value: 0.0
score: 537.878 |
Blast
BLAST of TCONS_00066089-protein vs. Swiss-Prot (Human)
Match: SC5A7 (High affinity choline transporter 1 OS=Homo sapiens GN=SLC5A7 PE=1 SV=1) HSP 1 Score: 553.132 bits (1424), Expect = 0.000e+0 Identity = 284/570 (49.82%), Postives = 391/570 (68.60%), Query Frame = 0 Query: 5 NIPGLVSIIVFYLLILLIGVFAAWKKNKATAQAQTTEEETNEVILAGRNIGMFVGCFTMTATWVGGGYINGTAESVY--NDGLVWAQAPWGYATSLSLGGFFFAKKMREANYITMLDPLQDRYGKIMGAFLYIPAFLGETFWSASILSALGATLRVILGLEMNLSVIVSACIAVGYTFFGGLYSVAYTDVVQLGCIAVGLWLCVPFSLSNDVTTSLSVT------KTEWIGHLEGYRVGQWIDYAMLLICGGLPWQVYFQRVLSSKSAGRAQTLSFVASFGCIAMAIPAVLIGAVAKSADWSQIQGAIDAGLISNATGKYIITDTRLTLPMVLQYLTPTWVSFIGLGAISAAVMSSADSSVLSASSMFGHNIYKLIFRQNATANEIIWVIRVGIFVVGALATVVGLTVESIYALFHLCSDLVFCILFPQLVGAVYIPTVNTYGSIAAYIVGLFLRCTGGEELINFPPLIKYP-FYKNN----HQNFPFRTLSMICSFITLVLVSKLFNYLFDNDIL--DVEKYDTLGVIERRKKLADKLMRQEKN-------GIRPQEDIPMKENYRKYE 552
++ GL++IIVFYLLILL+G++AAW+ T + + EE + +I+ GR+IG+ VG FTMTATWVGGGYINGTAE+VY GL WAQAP GY+ SL LGG FFAK MR Y+TMLDP Q YGK MG L+IPA +GE FW+A+I SALGAT+ VI+ ++M++SVI+SA IA YT GGLYSVAYTDVVQL CI VGLW+ VPF+LS+ + T + W+G ++ V W+D +LL+ GG+PWQ YFQRVLSS SA AQ LSF+A+FGC+ MAIPA+LIGA+ S DW+Q GL T + + + LP+VLQYL P ++SF GLGA+SAAVMSSADSS+LSASSMF NIY+L FRQNA+ EI+WV+R+ +FV GA AT + L +++Y L++L SDLV+ ++FPQL+ +++ NTYG++A Y+ GLFLR TGGE + PLI YP +Y ++ +Q FPF+TL+M+ SF+T + +S L YLF++ L ++ +D + + + ++ + +N ++P++ + + + E
Sbjct: 4 HVEGLIAIIVFYLLILLVGIWAAWR----TKNSGSAEERSEAIIVGGRDIGLLVGGFTMTATWVGGGYINGTAEAVYVPGYGLAWAQAPIGYSLSLILGGLFFAKPMRSKGYVTMLDPFQQIYGKRMGGLLFIPALMGEMFWAAAIFSALGATISVIIDVDMHISVIISALIATLYTLVGGLYSVAYTDVVQLFCIFVGLWISVPFALSHPAVADIGFTAVHAKYQKPWLGTVDSSEVYSWLDSFLLLMLGGIPWQAYFQRVLSSSSATYAQVLSFLAAFGCLVMAIPAILIGAIGASTDWNQTA----YGLPDPKTTE----EADMILPIVLQYLCPVYISFFGLGAVSAAVMSSADSSILSASSMFARNIYQLSFRQNASDKEIVWVMRITVFVFGASATAMALLTKTVYGLWYLSSDLVYIVIFPQLLCVLFVKGTNTYGAVAGYVSGLFLRITGGEPYLYLQPLIFYPGYYPDDNGIYNQKFPFKTLAMVTSFLTNICISYLAKYLFESGTLPPKLDVFDAVVARHSEENMDKTILVKNENIKLDELALVKPRQSMTLSSTFTNKE 561
The following BLAST results are available for this feature:
BLAST of TCONS_00066089-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 ( Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| SC5A7 | 0.000e+0 | 49.82 | High affinity choline transporter 1 OS=Homo sapien... | [more] |
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