TCONS_00064383-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00064383-protein
Unique Name	TCONS_00064383-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	569

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00064383-protein ID=TCONS_00064383-protein|Name=TCONS_00064383-protein|organism=Clytia hemisphaerica|type=polypeptide|length=569bp
CNSEFGKSEKSSKMEKEFNEIVVQAITCNQSQIELLISIVREKSSEKELV
SIFKVLKGKLHSLTKQHRVLVMCLLTCNWNITDQLMELFTDFVLELVSVN
SLFLKDSIRCLVKELSLKSEVADEKLVTLQMKLDRIHQIVESIVQTAPLS
VKFVGEAVESFFPFIGKSLFILKIYILNIMKVTTYIKGLRHQILAVIVDK
MLSMDVTILRHDIERIIDEQDHMQFQLDDSTIATNNESFLQIDKMDNLMA
LVMTFVRECCYSNDTMQWKKSKALFQELISIFEKVILKAQESSHVQFILF
YISGLDKNLSNDFVGACWMMFENPSNSLVTRQGACSYLGSYLARARIVDK
ETISHQMKHMSEWLHRYLKLQDGSNIQADFHKHGAFYSLSQTFFYVFVYH
HKAFVESEKGISYLKSLDLPRIVLSKLNPLRFCLKTIVDMFARITRMYEL
VFCYSTIEKNNRQKIFSQLEQNDRKAKFVEHFFPFDPYILPRSSVFIKPL
YNEWNDLNEMTSEEEHEEEEVLRDDMEDIDHMFASINPHLTMGKLSTSRK
SASHSFDMVCISPGFMNYN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040368	XLOC_040368	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00064383	TCONS_00064383	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007991	RNA_pol_I_trans_ini_fac_RRN3

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007991	RNA polymerase I specific transcription initiation factor RRN3	PFAM	PF05327	RRN3	coord: 20..508 e-value: 1.5E-103 score: 347.2

Blast

[Close]

BLAST of TCONS_00064383-protein vs. Swiss-Prot (Human)
Match: RRN3 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Homo sapiens GN=RRN3 PE=1 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.222e-85
Identity = 170/511 (33.27%), Postives = 274/511 (53.62%), Query Frame = 0

Query:   63 LTKQHRVLVMCLLTCNW-NITDQLMELFTDFVLELVSVNSLFLKDSI----------RCLVKELSLKSEVADEKLVTLQMKLDRIHQIVESIVQTAPLSVKFVGEAVESFFPFIGKSLFILKIYILNIMKVTTYIKGLRHQILAVIVDKMLSMDVTILRHDIERIIDEQDHMQFQLDDSTIATNN---------------ESFLQI-----DKMDNLMALVMTFVRECCYSNDTMQWKKSKALFQELISIFEKVILKAQESSHVQFILFYISGLDKNLSNDFVGACWMMFENPSNSLVTRQGACSYLGSYLARARIVDKETISHQMKHMSEWLHRYLKLQD-GSNIQADFHKHGAFYSLSQTFFYVFVYHHKAFVES--EKGISYLKSLDLPRIVLSKLNPLRFCLKTIVDMFARITRMYELVFCYSTIEKNNRQ--KIFSQLEQNDRK---AKFVEHFFPFDPYILPRSSVFIKPLYNEWNDLNEMTSEEEHEEEEVLRDDM-EDIDHMF 533
            LTK    L+  +L   W N +  ++E +  F+  LVS  ++FL+  +          R ++KE  +    +D++   L    D  H+ ++ I +  P +  F+   +   FPF+ KS   L+ Y+ N+++++ Y   LRH+IL +I++K+L +DV   R  IE   +E         DST    N               E   Q+     +++D LM+LV++++++ CY +  +   K+K L+++LI+IF+K++L    S HVQF +FY+       +  F+   W   ++PSN  + RQ A +Y+GS+LARA+ +   T+   +  +  WLH YL  QD G+    D   HG FYS  Q  FY FV+ HK  +    ++G+ YL+SL+  RIV+S+LNPL+ CL ++V+ FA IT  Y+LVFCY+ IE+NNRQ   +       D        ++ FFPFDP +L RS  FI P+Y  W D   M++EE  E ++ ++ D+ ED D  F
Sbjct:  102 LTKDFEQLISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDVSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYVHNLLRISVYFPTLRHEILELIIEKLLKLDVNASRQGIEDA-EETATQTCGGTDSTEGLFNMDEDEETEHETKAGPERLDQMVHPVAERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTNPLDTFFPFDPCVLKRSKKFIDPIYQVWED---MSAEELQEFKKPMKKDIVEDEDDDF 608

The following BLAST results are available for this feature:

BLAST of TCONS_00064383-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00064383-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RRN3	1.222e-85	33.27	RNA polymerase I-specific transcription initiation...	[more]

You are here

TCONS_00064383-protein (polypeptide) - C. hemisphaerica