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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064383 ID=TCONS_00064383|Name=TCONS_00064383|organism=Clytia hemisphaerica|type=transcript|length=2983bp
TGCAATTCCGAATTTGGAAAATCTGaaaaatcatcaaaaatggAGAAAGA
ATTCAATGAGATTGTTGTACAAGCAATCACTTGTAATCAATCACAAATTG
AATTGTTAATCAGCATTGTTAGGGAGAAATCTTCAGAAAAAGAACTTGTA
TCCATATTTAAAGTGTTGAAAGGAAAGTTGCACAGCCTGACAAAACAGCA
TCGAGTACTTGTCATGTGCTTATTGACCTGCAATTGGAATATCACTGATC
AACTTATGGaactttttactgattttgtGTTAGAACTGGTGTCAGTGaac
tctttgtttttaaaagatagtattcGATGCTTGGTGAAAGAGCTCTCCTT
GAAATCTGAAGTAGCTGATGAAAAGCTGGTTACTTTACAAATGAAACTTG
ACCGCATTCATCAAATTGTTGAATCTATTGTCCAGACTGCTCCTTTGTCG
GTCAAATTTGTTGGAGAAGCAGTTGAATCGTTTTTCCCCTTCATTGGTAA
AAGTTTGTTTATTCTGAAAATATACATTTTGAATATTATGAAAGTTACAA
CATATATCAAGGGTTTGAGACATCAGATCTTGGCAGTGATTGTTGATAAA
ATGTTATCAATGGACGTCACTATCCTGAGGCACGATATCGAGAGAATCAT
TGATGAACAGGACCACATGCAATTTCAGTTAGACGATAGCACGATTGCTA
CAAATaatgaaagttttttacaaATTGATAAAATGGACAACCTTATGGCA
CTGGTCATGACTTTTGTTAGAGAATGTTGTTATTCCAATGATACAATGCA
ATGGAAGAAATCCAAAGCTTTATTTCAAGAACTGATTAGTATTTTCGAGA
AGGTCATTTTGAAAGCACAAGAGAGCTCGCATGTACAATTTATACTTTTC
TACATCTCTGGCTTAGATAAAaaCCTAAGCAATGATTTTGTGGGTGCCTG
TTGGATGATGTTTGAAAACCCTTCCAATTCGTTGGTCACTCGACAGGGTG
CTTGTTCTTACCTCGGAAGTTATTTAGCACGTGCCAGAATTGTTGATAAA
GAGACCATCAGCCACCAAATGAAACACATGTCAGAATGGTTGCACAGATA
TCTCAAGTTACAAGATGGAAGCAACATACAAGCAGACTTCCATAAACATG
GCGCGTTTTATAGTTTATCACAAACGTTCTTTTATGTGTTTGTTTATCAT
CACAAAGCATTCGTGGAGTCAGAGAAAGGAATAAGTTACTTGAAATCACT
AGACTTGCCCAGGATTGTACTTTCTAAATTGAACCCGTTGAGATTTTGCT
TGAAGACGATTGTAGACATGTTTGCACGCATCACACGTATGTACGAACTG
GTGTTCTGTTACAGTACTATCGAGAAAAATAATAGACAAAAAATCTTCTC
ACAACTTGAGCAAAATGATAGGAAGGCAAAATTTGTAGAGCATTTCTTTC
CATTTGACCCGTACATCCTTCCACGATCGAGCGTATTCATAAAACCTTTG
TACAACGAATGGAACGATTTGAATGAGATGACGTCAGAAGAGGAACATGA
AGAAGAAGAGGTGCTTAGAGATGACATGGAAGACATTGATCATATGTTCG
CCTCCATCAACCCTCATCTCACCATGGGAAAACTTTCCACCAGTAGAAAA
TCTGCTTCACATAGTTTTGACATGGTGTGTATATCTCCTGGCTTTATGAA
CTATAATTGACTGGCTCCTAGCAGTTCTCTGTAtgaccttaagggaacta
atctTCGTGGAATAAATTCTCACAGTTTGATAGTCTATCGTGAAATGAGT
TTCGAGAGATACAGCTtccatcaaaattttaaaattggcgAAAATTAGAA
CAAAAACACCAATTCTTTAACCTCCGCACCGAGAAAGtttgttcccttaa
ggtagctaAAATAACCTTGTATTGTTTCTGTTGAATCAAGGAAATTTAAT
GAAACAAAATCTCTTTTATATTTTGGATTTCTATTTGCCGGTGCCCTCTC
ATGGGTCATcttcttgttttgaaaaaacaGGATTTATtagacagaccctg
gaaaatAATGAGGGTTATTTAAGATAATTCAGGGAAAACCTAGAATCGCT
GGGAATTCTGAATATCTACAATATCAGAATTTAaggtaaaaatatttgtt
gactTTTGTCTGAACCTTGTGATAATCGTTTCAACCAATCATGCACCTAT
TGCAAGTAAAGTAAAATACAAGTGTCTTTGATACTCTACCTACATATACC
tattatttgaaatttgtaaaatatataaaatataaggTGTGTTTGATAAA
TATATCGTATCATCATCGTGTACATAACTCTTCTTCGCCTGTCGACTACC
AAATTCCAAATGGTCTTCAGAAATTCCACATTATTCCATATTTTCATATA
TTTcatgtatatttttatttttgcagaAGTACTTTTCGAATCAAGCGTTG
aaaataaaagcttttgaaaGTACTCCCAACATGACTTCAAACTTTCATAT
TAAAACTTGAAGGGCTTTGATACTCCATGGACATTGTTTCAACTTTCACT
GTAAGAGGTGGGCCACtttacattttcttttgtaATTCTAATACCTTCTT
TTGCATAGAAGCCACTTTATTTTGTAACCTTGCCATTTTGTTTTGCAGAC
GTAAaatctctttctctttttcacTGGATGTTTCTTCTTCGATGACACTt
tgatgttgttgttgtggttttCTGGTGGCAGTCGTTTTACTTGTTCGCTC
GTTATTGCCAACAGAAGTATTGATGGAGGGGGTAATCAAACTTCCACTTT
TGATGGTGAAATATTGTGAGTGGTACTTCTTCCCTTCTTTACGATGACAC
GAAATGTTCTCCTCTCCTCCAAACGATATCGTTCTCGAATCTTCGAACAT
AACACATGACATGTCTGCACTCTTCTCagacaaaaacaaaatctacCTTG
TGCTATCAGGATAGTTCCAGTGCAACTTCTCTT Run BLAST on NCBI protein sequence of TCONS_00064383-protein >TCONS_00064383-protein ID=TCONS_00064383-protein|Name=TCONS_00064383-protein|organism=Clytia hemisphaerica|type=polypeptide|length=569bp
CNSEFGKSEKSSKMEKEFNEIVVQAITCNQSQIELLISIVREKSSEKELV
SIFKVLKGKLHSLTKQHRVLVMCLLTCNWNITDQLMELFTDFVLELVSVN
SLFLKDSIRCLVKELSLKSEVADEKLVTLQMKLDRIHQIVESIVQTAPLS
VKFVGEAVESFFPFIGKSLFILKIYILNIMKVTTYIKGLRHQILAVIVDK
MLSMDVTILRHDIERIIDEQDHMQFQLDDSTIATNNESFLQIDKMDNLMA
LVMTFVRECCYSNDTMQWKKSKALFQELISIFEKVILKAQESSHVQFILF
YISGLDKNLSNDFVGACWMMFENPSNSLVTRQGACSYLGSYLARARIVDK
ETISHQMKHMSEWLHRYLKLQDGSNIQADFHKHGAFYSLSQTFFYVFVYH
HKAFVESEKGISYLKSLDLPRIVLSKLNPLRFCLKTIVDMFARITRMYEL
VFCYSTIEKNNRQKIFSQLEQNDRKAKFVEHFFPFDPYILPRSSVFIKPL
YNEWNDLNEMTSEEEHEEEEVLRDDMEDIDHMFASINPHLTMGKLSTSRK
SASHSFDMVCISPGFMNYN Run BLAST on NCBI transcript from alignment at scaffold_412:104378..113834- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064383 ID=TCONS_00064383|Name=TCONS_00064383|organism=Clytia hemisphaerica|type=transcript|length=9457bp|location=Sequence derived from alignment at scaffold_412:104378..113834- (Clytia hemisphaerica)
TGCAATTCCGAATTTGGAAAATCTGGTGAGCAAGTAGCCTGGAAATCGGG
GTTAAGGTATCCTAATTTGCACTTGTTCCTGACTGCCTGCGGAGCCCAAG
GCGCCGAGTATGCACCCGGCACAGTGACAAGCCGTTACTAGCGACCATGT
TTATGATTTCTTATTTCATATACTGATGGTGATTCGCTAAAATGCTCAGA
GCGCGACGGCCCATTTTCCCTTTTCTATCTTTCCCCTTACCTGTTTATTC
TACTTTCTGACACTTAGTTTCTCATTGCATTTCTGACTGAGTTTTCATAT
CTGTCAATCATTTGTCCATCAATTTCGAACAGTCTAATTTTTGCACCGAG
TGGGGGAATCGAACCACCACCAAAGAAAGACCTTCAGATTCGGAAGCCAG
CGCTCTATCCGTTGAGCCATTGCCAGCCTAGACAAATGTTAAATTTTCTT
TCAGAAAAAAGACTACAATTTGTTTACCTTTATCCTTGCAGCTTCCCAAC
ATCCAAGCTCTCAAACATCACAAGCCAAATGAATTATTTGATTTCCCTTA
GAAATTATGCGATGAAAAATCCGGGGGTCAATAAATGAAGACTTTCTTTT
CCGCACAAGTTATCTTTCCTTATAACGAATTATTACTTTTCAATATAATT
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNATTGTATTTTAAGTTTGAAAAAGTCGATTCTACTTAGTTCTTTGT
TTTCATGTCTAACCCCCGTCTCAAAAGAAGTCCCAGAATCCCGAGATTTT
GGCAGTTGGGCGTTCAAAACAAAGGCGTTTTTATTTTCCGCCCACTTACG
AAATTTTCTTTAAAATAGGCATTTAAAATATCAAATTTACAAATAATAGT
ATAAAACCTTATTTTCTACCGTATAGTCCTTCTTCTAAAACAAACAAACA
AAATACACTAGAAAAATAAAGAAATTACAAGTGTTATCAAGCCACCCAAA
ATGAACTTTCATTCGTCGCACGTCATTGGATTGTTATCCGTCACGATCTA
TTGTCAACCATTGTCCAATCCCGTAAGCGATTGAAATGCCGTCAGTAATA
ATCTGAGAAAGAGAACAATAACATTATGACATCACACAAATAAATTACGC
TGGGGAAGTCCGCGAGGACAACACGCGGTCTTAACTTTTTTTCCCTCGTA
AGTTTGGGGGGAAAACGAAAGTACTCTATATGTTACGTATGGGGAAGTGA
AAGAAAGATTTACAAAATAGAAAAGTTTCGTTTTGGGGTAAAGAATCAGT
ATTGTGAATTTAAGCGAGTTTCTATTTTGCAATTTTTCTACAGAGCCAAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGATTGCCTC
TAAGGATAAGTTCCGTAGGTATGAGGCTATCGAGACAAAATGTGACGAAT
TTGCGCAGAAACAAAATTTAACATTTGTCTAGGCTTATTGCCGCACACAA
CAAAATCACGCAATTCATAACATATTATACCAAACTGGCAAAAGACGGGG
TTAATGTTATTATAATATTGGTAAAAGTACCCCTTCTTTAAACCTGGCTG
AAATTTGAGCCGTTAGAGTCATATCACCAGTGCACGAACGGCCCCAGTGC
ACGAACGAGCATCTTTGAACTTGAAAAAAACAACCAAAAACAAACTTCTA
TAGAACTTCCTTTGTGCAGCAGAATCCTCAAACCATTCCTTGCAATCTCT
CCAAAAATCAAAATAAACGGAGCACTAGAACAACACCAAACCGATTTTGA
ACGAGGCCAAGTAAAAAAATCACGAAATTTGGGATTTTTGTAAATATGGC
TGATCGCGAGAGAAAATGTTTTTTATAAGAAAATTTGCGCAAGAAGAGTT
CTGAAAATGGCTTTTTTCTTTTAAAAACCTGTTATCTTCCATCACACAAA
ATTTCATTGAAACATGTTAGCTCATTAATTCAAAATCAATAGAAACATAT
CACCAGTAGTTGATATAAAAAAGGTTCCAGTCCGCGAACGATCCGAACAC
CATATCCAAAATGAAGACATTGCAACGTCAAAACATTAGAAAGCGCTGGC
GATCTCAATTAAAAAAGAAGACACTACATTGCCGCGCTTTTCGATGAGCA
AAACTTGAAAAAGAAAACAAAAAAATGGACGACAAGAAANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGC
GTGGTTTTGAAAAGTTCAAATACCCCTGTATCATCTCGGAAGAGAGTTAA
AGTATTACCTGCGAGCGGAGCTCTAATTTTTTCTTTCAAAAGATCATTCG
CGCACTGGTTCCTCGTTCGCGGACTGGGTCCGAATAGCACTCGCTTTAAC
GACTTATTATTCCAAGAAGAATGCCTTCAAATAAAGTGACAACAAACTGA
AAGAAGGACTTCAAGCTTGTTTACGAGATGGTCAAAAAGGATTTATGTAA
AAACCAAAAGTAAGTCAGAAAAGAGAAAAATAAGTTTGCCGTTCGTGCAC
TGGGTACCCCCCTCTACTAGCAACCCTGCCAGTCAGGAACAAGTGCAAAT
TAGGATACCTGTCGGCAATCTCTCCTATTTAGGAGAGTTGTATCCTAATT
TGGAGATTTAGGTATCCTAAATAGGACAGCATATACTTTGACCTGAATTT
TTGAGGTTACTGCTTCGATCCGCGTTTGGAAAACTATGATGCAAACCTTT
TCTTCATCGAGATTTGCACCACTGAGTAAAATTTCAAGTAATTTCTCTGG
CGGGTTCCTCGAAAATTAAAATCCTTAATAATCTGCTGTTCAGAGAGGCT
AAAGTTTTGCGAACACGAGCTAAAGATTTGTTTTTCTTTTTACGGAACGG
CCAGCTACGGTCCGAATTTCAAAATGGTAGCCGTATAGAAGGAAGGGGCC
TGGTGATTTTCGCGCGAAAAAAGCTTTCGCGTATGCTAGTTAGCACATTT
TGAGTGGTTTTGGGCTATAGTTTTGCATTCCGCCAGCCAAACTCGATGAA
ATTCAGTAGACAATTTCATTTGCTTATTATTTACATCTTGGAAGTAGTAA
GATGTCTCTGGTTGGTGACAAATACAGGTTTTTTGGTTTTTAGTATCCTA
ATTAGGATGTTGATTGCTATTTTGGATACTTTTTTGTATCCAATTTAAGA
TACTCTCCTAAGTAGGAGAGATTGCCGAAGGTCACCTAATTTGCACTTGT
TCCTGACTGCCTGCGGGGCCGTAGGCGCCGAGTATGCACCCGGCACAGTG
ACAAGCCGTTACTAGCGACCCTGACCCTACCTCCCAATACCCCCTGAATC
ACGGAATGACAAATAGGAAAAATTATCGGGGAAAAAATTTGCTCGTCGCG
CTCTGAGCACTCAGGGAAATCTCTTTTTTTAAAGAGGCAGCCATGTTAAA
TAATTATGTGCTCCAGCATAAAAACAATGATACAGCCAGACGTAATTAAT
CGAACAGTTCGATTACCGAACTAATCGTACTTTGTCGAACTTAATTGAAC
GACAAAAGTCGCTAAAATTGTGAGTATTCGATTTAGTTCGACAAAACATA
TTAAGTTCGACAAAGTTCAAGAACGATAAATGTTTGACAAATTCGACAAA
AAGCTCTGTTCGAAAAAGTTCGACAACAAAAAATGACCTCCTTTGGGTAC
CATCGTGGACGGCCCCTGGGGGTCCCGGCCAAGGTCCCGAGGGGTTCGAT
TGGAGCCCACTGGTCAGGGGATGTGAGAGTACACGTCTGCACTGTTGGGG
GTCCTTCAAAGTTCTTCAAAGTGTTGTCAAAAGCCGGCAAAAATTGCGAA
AAATGACCTCCTTTGGGTACCAGCCACTGTGGGACCAATCGAGGCCTCTA
CAGCCCCCCACAGCCCTTCGAACCGCTTCGGATACCCTTTGCCTTGCTTT
CCCTCAAAGCCAGCACCCTTCATCAGTCATCCGAAGCCTTTAAAAGGCTT
GGAGAGCCTTGAAAATTGGAAGAAATGACCTCCTTTGGGTACCACCGTGG
ACGACCCCTGGGGGTCCCGGCCGGGGGGTTCCTGGTTGATCGGTGCCCAC
TGGTCAGGGGGGATGCGAGGGTACACGCCTGCACCAGCGGGTTCCTCAAA
GTGTTGTCAAAGGCCGGCATAAAGTGCGATCGAATTACGCGCAAGTGGAG
CGGCCTTCAGTTGCTCGGGTTTTCTCAAATTTTTGTTCGATTAAACTTGA
CAAAGTTCGATCAATTAGTTTGATTAAGTTTGATTAATGTAATCAAACTA
ATCGAACTATCGAAGTCTCTTTAAAAAAAGTTTGATTAAGTTTGATTTCA
GTAATCAAACTTAATCGAACTTTGTATTTTGAGAAATTTGTGAGTATTCG
ATTAAAGTTCGACAACCGAAATTAGTCGAACATTAATCGACCAACAAAGT
TCGATTAAGTTTGACAAAGTTCGATTAAAAATACCGTTCGATTGGTTCGA
TTAATTACGTCAGGATACAGCCATGCATAATTTTTAAAATATGCATGATA
CAGTAATAGACCTTTTGGCCTTTCCATCCGCCATATTGAATAGTATGCAA
AAATAATGGTGGCTGAATTGCCGTGGTGAAATTCCCTTAGAAAGTATGCA
AAACATATGCAAAAAGAAAGTATTAATATAAAACTTACATGCATAATTGG
CATTATATTGAAGTTTAATCTTTGAGAAAAAAGATTAAATTTGCTTCTCT
TGAAAACTAAAAGTAATTATATTCGCTCATCTCTTAGAACAAGCACTTCA
AAAATCAATAACATTAGACAAATTCAAACTGAAAAATCATCAGCGAAGGT
AAAAAATAATCCTTATTCGGCTGGCGGTAAATTATTCTCCTGGGAATAGA
GCCGCCAAATGATCAATCAAAACATTGATAATGTGTGACGTCATAATTAC
TGCTTTTCAGTTTGCGTGTTTTGAAAGTTTGATGTGTGTACTCCGTCTTC
GTGGAATTTCTTAATGGCATGAAAAAAGAATATGTTATGTCTGTAAGAAC
AAATTTCTAAGCAAAAAAAGAACCACTCTGACAAAACCCCAAAAGAGGCA
GGGTCCATAAGCCTTATAATACCCCAAACACACCACACAAACCAAGAGGA
CCCTGCCGACGCACCAGACTTAACAAACACCAGACATGCGAAAGTCCGGT
GTAAAATGGGAATTTTTTTACCACCGGACAATCTCTACACCAAACTTAAG
GAAGTCGGATGTCCGGTGTCGAAGAAGGATATTTTTTCCACCGGACAATC
AAAACACCGGACATGACCAGTCCGGTCCGTCCGGTGTTTCTTAATCTTTT
GTTTCATAAATGTCTGGCGTCCAAAATTCCCTGTATGCAACACCGGACTG
ACACCGGACTTATACCGGTGTAGCGGAAGGATATTTTTTGCCACCGGACA
GTCCGGTGCGTTGGCAGGGTCCTAAACCAAGGTGGCACATTACCTGCTGC
AATCCGCACAACGCTCTTTCTTTCCTTCTAGTTCTTCTAATGTAAATGGT
TCCTTAAAAAAATTGAACAATATTCGTCAAACGTTCAAACATTTTTATTC
GAATTGTCTTTTGAAATCAAACGTAAACAAAAGCAAAAATGATGGCTTGA
TGGCTTTATAAAGGGGGGAGGACACTATGGTATGCTATTCAAGCTGCTCA
TTTCATTTTCTTACTCTCTTGCTATTTTTCCTATTTTTATTTGACTCGCG
TCATCACCAAGTAGGTCCATTCAGCATGTTACGTGTTGTATTTTATTTTC
AGAAAAATCATCAAAAATGGAGAAAGAATTCAATGAGATTGTTGTACAAG
CAATCACTTGTAATCAATCACAAATTGAATTGTTAATCAGCATTGTTAGG
GAGAAATCTTCAGAAAAAGAACTTGTATCCATATTTAAAGTGTTGAAAGG
AAAGTTGCACAGCCTGACAAAACAGCATCGAGTACTTGTCATGTGCTTAT
TGACCTGCAATTGGAATATCACTGATCAACTTATGGAACTTTTTACTGAT
TTTGTGTTAGAACTGGTGTCAGTGAACTCTTTGTTTTTAAAAGATAGTAT
TCGATGCTTGGTGAAAGAGCTCTCCTTGAAATCTGAAGTAGCTGATGAAA
AGCTGGTTACTTTACAAATGAAACTTGACCGCATTCATCAAATTGTTGAA
TCTATTGTCCAGACTGCTCCTTTGTCGGTCAAATTTGTTGGAGAAGCAGT
TGAATCGTTTTTCCCCTTCATTGGTAAAAGTTTGTTTATTCTGAAAATAT
ACATTTTGAATATTATGAAAGTTACAACATATATCAAGGGTTTGAGACAT
CAGATCTTGGCAGTGATTGTTGATAAAATGTTATCAATGGACGTCACTAT
CCTGAGGCACGATATCGAGAGAATCATTGATGAACAGGACCACATGCAAT
TTCAGTTAGACGATAGCACGATTGCTACAAATAATGAAAGTTTTTTACAA
ATTGATAAAATGGACAACCTTATGGCACTGGTCATGACTTTTGTTAGAGA
ATGTTGTTATTCCAATGATACAATGCAATGGAAGAAATCCAAAGCTTTAT
TTCAAGAACTGATTAGTATTTTCGAGAAGGTCATTTTGAAAGCACAAGAG
AGCTCGCATGTACAATTTATACTTTTCTACATCTCTGGCTTAGATAAAGT
AAGTATTTTTTTGTCTTCTTAGGTTGGTCTAAGAAGCATAAGCCTTTATT
AACAATAGTTAGGAACAGTAAAATTTGTGCCTGANACTTCTTAGGTTGGT
CTAAGCAGCATAAGCCTTTATTAACAATAGTGAGGGACAGTAAAATTTGT
GCCTGAAGTAAGAAATGTTTGTTTTGAGGTACTGGGGTTTGTGGTACATA
TACCTGTACCATTGCTCTGCAAAAAAAACTGCGACAAGAGTTTCAAATAA
TCTGGAACAATTTCATAATTTACATTGACAGTATTTTCTGAAATTCGAGG
TGTGCTTTCATTTAATTCTCAACTTTTCCACTTTAATTTTTTCAGAACCT
AAGCAATGATTTTGTGGGTGCCTGTTGGATGATGTTTGAAAACCCTTCCA
ATTCGTTGGTCACTCGACAGGGTGCTTGTTCTTACCTCGGAAGTTATTTA
GCACGTGCCAGAATTGTTGATAAAGAGACCATCAGCCACCAAATGAAACA
CATGTCAGAATGGTTGCACAGATATCTCAAGTTACAAGATGGAAGCAACA
TACAAGCAGACTTCCATAAACATGGCGCGTTTTATAGTTTATCACAAACG
TTCTTTTATGTGTTTGTTTATCATCACAAAGCATTCGTGGAGTCAGAGAA
AGGAATAAGTTACTTGAAATCACTAGACTTGCCCAGGATTGTACTTTCTA
AATTGAACCCGTTGAGATTTTGCTTGAAGACGATTGTAGACATGTTTGCA
CGCATCACACGTATGTACGAACTGGTGTTCTGTTACAGTACTATCGAGAA
AAATAATAGACAAAAAATCTTCTCACAACTTGAGCAAAATGATAGGAAGG
CAAAATTTGTAGAGCATTTCTTTCCATTTGACCCGTACATCCTTCCACGA
TCGAGCGTATTCATAAAACCTTTGTACAACGAATGGAACGATTTGAATGA
GATGACGTCAGAAGAGGAACATGAAGAAGAAGAGGTGCTTAGAGATGACA
TGGAAGACATTGATCATATGTTCGCCTCCATCAACCCTCATCTCACCATG
GGAAAACTTTCCACCAGTAGAAAATCTGCTTCACATAGTTTTGACATGGT
GTGTATATCTCCTGGCTTTATGAACTATAATTGACTGGCTCCTAGCAGTT
CTCTGTATGACCTTAAGGGAACTAATCTTCGTGGAATAAATTCTCACAGT
TTGATAGTCTATCGTGAAATGAGTTTCGAGAGATACAGCTTCCATCAAAA
TTTTAAAATTGGCGAAAATTAGAACAAAAACACCAATTCTTTAACCTCCG
CACCGAGAAAGTTTGTTCCCTTAAGGTAGCTAAAATAACCTTGTATTGTT
TCTGTTGAATCAAGGAAATTTAATGAAACAAAATCTCTTTTATATTTTGG
ATTTCTATTTGCCGGTGCCCTCTCATGGGTCATCTTCTTGTTTTGAAAAA
ACAGGATTTATTAGACAGACCCTGGAAAATAATGAGGGTTATTTAAGATA
ATTCAGGGAAAACCTAGAATCGCTGGGAATTCTGAATATCTACAATATCA
GAATTTAAGGTAAAAATATTTGTTGACTTTTGTCTGAACCTTGTGATAAT
CGTTTCAACCAATCATGCACCTATTGCAAGTAAAGTAAAATACAAGTGTC
TTTGATACTCTACCTACATATACCTATTATTTGAAATTTGTAAAATATAT
AAAATATAAGGTGTGTTTGATAAATATATCGTATCATCATCGTGTACATA
ACTCTTCTTCGCCTGTCGACTACCAAATTCCAAATGGTCTTCAGAAATTC
CACATTATTCCATATTTTCATATATTTCATGTATATTTTTATTTTTGCAG
AAGTACTTTTCGAATCAAGCGTTGAAAATAAAAGCTTTTGAAAGTACTCC
CAACATGACTTCAAACTTTCATATTAAAACTTGAAGGGCTTTGATACTCC
ATGGACATTGTTTCAACTTTCACTGTAAGAGGTGGGCCACTTTACATTTT
CTTTTGTAATTCTAATACCTTCTTTTGCATAGAAGCCACTTTATTTTGTA
ACCTTGCCATTTTGTTTTGCAGACGTAAAATCTCTTTCTCTTTTTCACTG
GATGTTTCTTCTTCGATGACACTTTGATGTTGTTGTTGTGGTTTTCTGGT
GGCAGTCGTTTTACTTGTTCGCTCGTTATTGCCAACAGAAGTATTGATGG
AGGGGGTAATCAAACTTCCACTTTTGATGGTGAAATATTGTGAGTGGTAC
TTCTTCCCTTCTTTACGATGACACGAAATGTTCTCCTCTCCTCCAAACGA
TATCGTTCTCGAATCTTCGAACATAACACATGACATGTCTGCACTCTTCT
CAGACAAAAACAAAATCTACCTTGTGCTATCAGGATAGTTCCAGTGCAAC
TTCTCTT Coding sequence (CDS) from alignment at scaffold_412:104378..113834- >TCONS_00064383 ID=TCONS_00064383|Name=TCONS_00064383|organism=Clytia hemisphaerica|type=CDS|length=5130bp|location=Sequence derived from alignment at scaffold_412:104378..113834- (Clytia hemisphaerica)
AACCTAAGCAATGATTTTGTGGGTGCCTGTTGGATGATGTTTGAAAACCC
TTCCAATTCGTTGGTCACTCGACAGGGTGCTTGTTCTTACCTCGGAAGTT
ATTTAGCACGTGCCAGAATTGTTGATAAAGAGACCATCAGCCACCAAATG
AAACACATGTCAGAATGGTTGCACAGATATCTCAAGTTACAAGATGGAAG
CAACATACAAGCAGACTTCCATAAACATGGCGCGTTTTATAGTTTATCAC
AAACGTTCTTTTATGTGTTTGTTTATCATCACAAAGCATTCGTGGAGTCA
GAGAAAGGAATAAGTTACTTGAAATCACTAGACTTGCCCAGGATTGTACT
TTCTAAATTGAACCCGTTGAGATTTTGCTTGAAGACGATTGTAGACATGT
TTGCACGCATCACACGTATGTACGAACTGGTGTTCTGTTACAGTACTATC
GAGAAAAATAATAGACAAAAAATCTTCTCACAACTTGAGCAAAATGATAG
GAAGGCAAAATTTGTAGAGCATTTCTTTCCATTTGACCCGTACATCCTTC
CACGATCGAGCGTATTCATAAAACCTTTGTACAACGAATGGAACGATTTG
AATGAGATGACGTCAGAAGAGGAACATGAAGAAGAAGAGGTGCTTAGAGA
TGACATGGAAGACATTGATCATATGTTCGCCTCCATCAACCCTCATCTCA
CCATGGGAAAACTTTCCACCAGTAGAAAATCTGCTTCACATAGTTTTGAC
ATGGTGTGTATATCTCCTGGCTTTATGAACTATAATTGAAAAAATCATCA
AAAATGGAGAAAGAATTCAATGAGATTGTTGTACAAGCAATCACTTGTAA
TCAATCACAAATTGAATTGTTAATCAGCATTGTTAGGGAGAAATCTTCAG
AAAAAGAACTTGTATCCATATTTAAAGTGTTGAAAGGAAAGTTGCACAGC
CTGACAAAACAGCATCGAGTACTTGTCATGTGCTTATTGACCTGCAATTG
GAATATCACTGATCAACTTATGGAACTTTTTACTGATTTTGTGTTAGAAC
TGGTGTCAGTGAACTCTTTGTTTTTAAAAGATAGTATTCGATGCTTGGTG
AAAGAGCTCTCCTTGAAATCTGAAGTAGCTGATGAAAAGCTGGTTACTTT
ACAAATGAAACTTGACCGCATTCATCAAATTGTTGAATCTATTGTCCAGA
CTGCTCCTTTGTCGGTCAAATTTGTTGGAGAAGCAGTTGAATCGTTTTTC
CCCTTCATTGGTAAAAGTTTGTTTATTCTGAAAATATACATTTTGAATAT
TATGAAAGTTACAACATATATCAAGGGTTTGAGACATCAGATCTTGGCAG
TGATTGTTGATAAAATGTTATCAATGGACGTCACTATCCTGAGGCACGAT
ATCGAGAGAATCATTGATGAACAGGACCACATGCAATTTCAGTTAGACGA
TAGCACGATTGCTACAAATAATGAAAGTTTTTTACAAATTGATAAAATGG
ACAACCTTATGGCACTGGTCATGACTTTTGTTAGAGAATGTTGTTATTCC
AATGATACAATGCAATGGAAGAAATCCAAAGCTTTATTTCAAGAACTGAT
TAGTATTTTCGAGAAGGTCATTTTGAAAGCACAAGAGAGCTCGCATGTAC
AATTTATACTTTTCTACATCTCTGGCTTAGATAAATGCAATTCCGAATTT
GGAAAATCTGAACCTAAGCAATGATTTTGTGGGTGCCTGTTGGATGATGT
TTGAAAACCCTTCCAATTCGTTGGTCACTCGACAGGGTGCTTGTTCTTAC
CTCGGAAGTTATTTAGCACGTGCCAGAATTGTTGATAAAGAGACCATCAG
CCACCAAATGAAACACATGTCAGAATGGTTGCACAGATATCTCAAGTTAC
AAGATGGAAGCAACATACAAGCAGACTTCCATAAACATGGCGCGTTTTAT
AGTTTATCACAAACGTTCTTTTATGTGTTTGTTTATCATCACAAAGCATT
CGTGGAGTCAGAGAAAGGAATAAGTTACTTGAAATCACTAGACTTGCCCA
GGATTGTACTTTCTAAATTGAACCCGTTGAGATTTTGCTTGAAGACGATT
GTAGACATGTTTGCACGCATCACACGTATGTACGAACTGGTGTTCTGTTA
CAGTACTATCGAGAAAAATAATAGACAAAAAATCTTCTCACAACTTGAGC
AAAATGATAGGAAGGCAAAATTTGTAGAGCATTTCTTTCCATTTGACCCG
TACATCCTTCCACGATCGAGCGTATTCATAAAACCTTTGTACAACGAATG
GAACGATTTGAATGAGATGACGTCAGAAGAGGAACATGAAGAAGAAGAGG
TGCTTAGAGATGACATGGAAGACATTGATCATATGTTCGCCTCCATCAAC
CCTCATCTCACCATGGGAAAACTTTCCACCAGTAGAAAATCTGCTTCACA
TAGTTTTGACATGGTGTGTATATCTCCTGGCTTTATGAACTATAATTGAA
AAAATCATCAAAAATGGAGAAAGAATTCAATGAGATTGTTGTACAAGCAA
TCACTTGTAATCAATCACAAATTGAATTGTTAATCAGCATTGTTAGGGAG
AAATCTTCAGAAAAAGAACTTGTATCCATATTTAAAGTGTTGAAAGGAAA
GTTGCACAGCCTGACAAAACAGCATCGAGTACTTGTCATGTGCTTATTGA
CCTGCAATTGGAATATCACTGATCAACTTATGGAACTTTTTACTGATTTT
GTGTTAGAACTGGTGTCAGTGAACTCTTTGTTTTTAAAAGATAGTATTCG
ATGCTTGGTGAAAGAGCTCTCCTTGAAATCTGAAGTAGCTGATGAAAAGC
TGGTTACTTTACAAATGAAACTTGACCGCATTCATCAAATTGTTGAATCT
ATTGTCCAGACTGCTCCTTTGTCGGTCAAATTTGTTGGAGAAGCAGTTGA
ATCGTTTTTCCCCTTCATTGGTAAAAGTTTGTTTATTCTGAAAATATACA
TTTTGAATATTATGAAAGTTACAACATATATCAAGGGTTTGAGACATCAG
ATCTTGGCAGTGATTGTTGATAAAATGTTATCAATGGACGTCACTATCCT
GAGGCACGATATCGAGAGAATCATTGATGAACAGGACCACATGCAATTTC
AGTTAGACGATAGCACGATTGCTACAAATAATGAAAGTTTTTTACAAATT
GATAAAATGGACAACCTTATGGCACTGGTCATGACTTTTGTTAGAGAATG
TTGTTATTCCAATGATACAATGCAATGGAAGAAATCCAAAGCTTTATTTC
AAGAACTGATTAGTATTTTCGAGAAGGTCATTTTGAAAGCACAAGAGAGC
TCGCATGTACAATTTATACTTTTCTACATCTCTGGCTTAGATAAATGCAA
TTCCGAATTTGGAAAATCTGAACCTAAGCAATGATTTTGTGGGTGCCTGT
TGGATGATGTTTGAAAACCCTTCCAATTCGTTGGTCACTCGACAGGGTGC
TTGTTCTTACCTCGGAAGTTATTTAGCACGTGCCAGAATTGTTGATAAAG
AGACCATCAGCCACCAAATGAAACACATGTCAGAATGGTTGCACAGATAT
CTCAAGTTACAAGATGGAAGCAACATACAAGCAGACTTCCATAAACATGG
CGCGTTTTATAGTTTATCACAAACGTTCTTTTATGTGTTTGTTTATCATC
ACAAAGCATTCGTGGAGTCAGAGAAAGGAATAAGTTACTTGAAATCACTA
GACTTGCCCAGGATTGTACTTTCTAAATTGAACCCGTTGAGATTTTGCTT
GAAGACGATTGTAGACATGTTTGCACGCATCACACGTATGTACGAACTGG
TGTTCTGTTACAGTACTATCGAGAAAAATAATAGACAAAAAATCTTCTCA
CAACTTGAGCAAAATGATAGGAAGGCAAAATTTGTAGAGCATTTCTTTCC
ATTTGACCCGTACATCCTTCCACGATCGAGCGTATTCATAAAACCTTTGT
ACAACGAATGGAACGATTTGAATGAGATGACGTCAGAAGAGGAACATGAA
GAAGAAGAGGTGCTTAGAGATGACATGGAAGACATTGATCATATGTTCGC
CTCCATCAACCCTCATCTCACCATGGGAAAACTTTCCACCAGTAGAAAAT
CTGCTTCACATAGTTTTGACATGGTGTGTATATCTCCTGGCTTTATGAAC
TATAATTGAAAAAATCATCAAAAATGGAGAAAGAATTCAATGAGATTGTT
GTACAAGCAATCACTTGTAATCAATCACAAATTGAATTGTTAATCAGCAT
TGTTAGGGAGAAATCTTCAGAAAAAGAACTTGTATCCATATTTAAAGTGT
TGAAAGGAAAGTTGCACAGCCTGACAAAACAGCATCGAGTACTTGTCATG
TGCTTATTGACCTGCAATTGGAATATCACTGATCAACTTATGGAACTTTT
TACTGATTTTGTGTTAGAACTGGTGTCAGTGAACTCTTTGTTTTTAAAAG
ATAGTATTCGATGCTTGGTGAAAGAGCTCTCCTTGAAATCTGAAGTAGCT
GATGAAAAGCTGGTTACTTTACAAATGAAACTTGACCGCATTCATCAAAT
TGTTGAATCTATTGTCCAGACTGCTCCTTTGTCGGTCAAATTTGTTGGAG
AAGCAGTTGAATCGTTTTTCCCCTTCATTGGTAAAAGTTTGTTTATTCTG
AAAATATACATTTTGAATATTATGAAAGTTACAACATATATCAAGGGTTT
GAGACATCAGATCTTGGCAGTGATTGTTGATAAAATGTTATCAATGGACG
TCACTATCCTGAGGCACGATATCGAGAGAATCATTGATGAACAGGACCAC
ATGCAATTTCAGTTAGACGATAGCACGATTGCTACAAATAATGAAAGTTT
TTTACAAATTGATAAAATGGACAACCTTATGGCACTGGTCATGACTTTTG
TTAGAGAATGTTGTTATTCCAATGATACAATGCAATGGAAGAAATCCAAA
GCTTTATTTCAAGAACTGATTAGTATTTTCGAGAAGGTCATTTTGAAAGC
ACAAGAGAGCTCGCATGTACAATTTATACTTTTCTACATCTCTGGCTTAG
ATAAATGCAATTCCGAATTTGGAAAATCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064383-exon-scaffold_412-1575043694:113810..113834 | TCONS_00064383-exon-scaffold_412-1575043694:113810..113834 | Clytia hemisphaerica | exon |
| TCONS_00064383-exon-scaffold_412-1575043694:106787..107682 | TCONS_00064383-exon-scaffold_412-1575043694:106787..107682 | Clytia hemisphaerica | exon |
| TCONS_00064383-exon-scaffold_412-1575043694:104378..106439 | TCONS_00064383-exon-scaffold_412-1575043694:104378..106439 | Clytia hemisphaerica | exon |
| TCONS_00064383-exon-scaffold_412-1510915933:113810..113834 | TCONS_00064383-exon-scaffold_412-1510915933:113810..113834 | Clytia hemisphaerica | exon |
| TCONS_00064383-exon-scaffold_412-1510915933:106787..107682 | TCONS_00064383-exon-scaffold_412-1510915933:106787..107682 | Clytia hemisphaerica | exon |
| TCONS_00064383-exon-scaffold_412-1510915933:104378..106439 | TCONS_00064383-exon-scaffold_412-1510915933:104378..106439 | Clytia hemisphaerica | exon |
| TCONS_00064383-exon-scaffold_412-1491911889:113810..113834 | TCONS_00064383-exon-scaffold_412-1491911889:113810..113834 | Clytia hemisphaerica | exon |
| TCONS_00064383-exon-scaffold_412-1491911889:106787..107682 | TCONS_00064383-exon-scaffold_412-1491911889:106787..107682 | Clytia hemisphaerica | exon |
| TCONS_00064383-exon-scaffold_412-1491911889:104378..106439 | TCONS_00064383-exon-scaffold_412-1491911889:104378..106439 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_412 | supercontig | scaffold_412:104378..113834 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007991 | RNA_pol_I_trans_ini_fac_RRN3 |
Blast
BLAST of TCONS_00064383 vs. Swiss-Prot (Human)
Match: RRN3 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Homo sapiens GN=RRN3 PE=1 SV=1) HSP 1 Score: 273.092 bits (697), Expect = 7.379e-79 Identity = 161/485 (33.20%), Postives = 260/485 (53.61%), Query Frame = 1
Query: 187 LTKQHRVLVMCLLTCNW-NITDQLMELFTDFVLELVSVNSLFLKDSI----------RCLVKELSLKSEVADEKLVTLQMKLDRIHQIVESIVQTAPLSVKFVGEAVESFFPFIGKSLFILKIYILNIMKVTTYIKGLRHQILAVIVDKMLSMDVTILRHDIERIIDEQDHMQFQLDDSTIATNN---------------ESFLQI-----DKMDNLMALVMTFVRECCYSNDTMQWKKSKALFQELISIFEKVILKAQESSHVQFILFYISGLDKNLSNDFVGACWMMFENPSNSLVTRQGACSYLGSYLARARIVDKETISHQMKHMSEWLHRYLKLQD-GSNIQADFHKHGAFYSLSQTFFYVFVYHHKAFVES--EKGISYLKSLDLPRIVLSKLNPLRFCLKTIVDMFARITRMYELVFCYSTIEKNNRQ--KIFSQLEQNDRK---AKFVEHFFPFDPYILPRSSVFIKPLYNEWNDLN 1524
LTK L+ +L W N + ++E + F+ LVS ++FL+ + R ++KE + +D++ L D H+ ++ I + P + F+ + FPF+ KS L+ Y+ N+++++ Y LRH+IL +I++K+L +DV R IE +E DST N E Q+ +++D LM+LV++++++ CY + + K+K L+++LI+IF+K++L S HVQF +FY+ + F+ W ++PSN + RQ A +Y+GS+LARA+ + T+ + + WLH YL QD G+ D HG FYS Q FY FV+ HK + ++G+ YL+SL+ RIV+S+LNPL+ CL ++V+ FA IT Y+LVFCY+ IE+NNRQ + D ++ FFPFDP +L RS FI P+Y W D++
Sbjct: 102 LTKDFEQLISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDVSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYVHNLLRISVYFPTLRHEILELIIEKLLKLDVNASRQGIEDA-EETATQTCGGTDSTEGLFNMDEDEETEHETKAGPERLDQMVHPVAERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTNPLDTFFPFDPCVLKRSKKFIDPIYQVWEDMS 585
The following BLAST results are available for this feature:
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