TCONS_00063660-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063660-protein
Unique NameTCONS_00063660-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length318

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063660-protein ID=TCONS_00063660-protein|Name=TCONS_00063660-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
KMEIFIKTLTGKTIPLSVNPRNEVDDVKEMIFEKERTPVEIQRLVFAGKQ
LESGRTLSYYGIKDASTLHLVLRLRGMISNFSEYDISDPLIAFLMKGDVD
SVEISEELLKKKMRECEGYLENSTLKFEHTGIKMLALREKRKLMGVADCV
FSLQQIQGKPGSIRQDIKILLPNGSLQKITGSNTIEAKLKSHHSEPPEDL
KVVLRRTAPTDGCLPWHVDGYYSRATVQYTLNDDREYKGGRLCFYTEDLG
LYVPRRPAGTLSIHTKEMHGVSRLISGVRYVLFVVEPTNDLGGTTENIVD
LASNNMLQSMLATMDDNI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039902XLOC_039902Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063660TCONS_00063660Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019956UbiquitinPRINTSPR00348UBIQUITINcoord: 54..75
score: 71.11
coord: 33..53
score: 59.92
coord: 12..32
score: 40.74
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 2..73
e-value: 8.4E-21
score: 85.1
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 4..75
e-value: 3.5E-23
score: 81.0
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 2..77
score: 23.027
NoneNo IPR availableGENE3D3.10.20.90coord: 1..83
e-value: 4.8E-31
score: 105.9
NoneNo IPR availableGENE3D2.60.120.620coord: 179..284
e-value: 5.5E-4
score: 19.5
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 2..76

Blast
[Close]
BLAST of TCONS_00063660-protein vs. Swiss-Prot (Human)
Match: RL40 (Ubiquitin-60S ribosomal protein L40 OS=Homo sapiens GN=UBA52 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 5.974e-25
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 0 
Query:    2 MEIFIKTLTGKTIPLSVNPRNEVDDVKEMIFEKERTPVEIQRLVFAGKQLESGRTLSYYGIKDASTLHLVLRLRGMI 78
            M+IF+KTLTGKTI L V P + +++VK  I +KE  P + QRL+FAGKQLE GRTLS Y I+  STLHLVLRLRG I
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77
The following BLAST results are available for this feature:
BLAST of TCONS_00063660-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL405.974e-2563.64Ubiquitin-60S ribosomal protein L40 OS=Homo sapien... [more]
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