TCONS_00063660 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063660
Unique NameTCONS_00063660
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1227

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063660 ID=TCONS_00063660|Name=TCONS_00063660|organism=Clytia hemisphaerica|type=transcript|length=1227bp
GGCACAAATCGATGCAAAATCATGCGATGAaatgaaattggaaaattgat
tTGTATAAAGATATTATTAATAATTCAAGAAATCCGAAATTTTACAAATG
CAATCTGAGATGAGGCTGAGACAAAATCTActtgcttttataaaaaatat
gtgctataaaaaaaattcatgcgAGTTTCAAGTAGAAGTGTATCGTCTAG
TAGAAGTGCAATTTCCCTTCGTTTACTTTGATGAAGAGGTACCTTCCCAG
GGTACCTTGTATATTGTTTCATATGTTGTCGTCCATTGTAGCTAACATAC
TTTGTAGCATATTGTTTGAAGCTAGATCGACTATATTTTCTGTTGTGCCA
CCCAAATCATTAGTAGGTTCGACCACGAACAATACATAACGTACGCCGCT
GATCAATCTTGACACGCCATGCATTTCTTTGGTATGGATAGATAACGTAC
CGGCCGGTCGGCGAGGGACATACAAACCTAGATCCTCAGTATAAAAACAT
AATCTACCTCCCTTATATTCCCTGTCGTCATTCAATGTATACTGAACGGT
TGCCCTAGAATAATACCCATCTACGTGCCACGGTAAACAGCCATCAGTTG
GAGCTGTTCGTCTCAGAACAACTTTTAGATCTTCTGGGGGTTCTGAATGG
TGCGACTTCAATTTTGCTTCTATTGTATTTGAACCTGTGATTTTCTGCAG
TGAACCGTTAGGTAACAGGATTTTGATGTCTTGACGTATAGAACCTGGTT
TTCCTTGGATTTGTTGTAAGGAGAATACACAATCAGCCACACCCATCAAT
TTTCGTTTTTCACGTAAAGCAAGCATCTTAATCCCTGTATGCTCAAACTT
CAGTGTAGAATTTTCAAGATAGCCttcgcattcacgcattttctttttca
ataactCTTCTGATATTTCAACACTGTCCACATCACCTTTCATCAGAAAT
GCAATAAGGGGGTCACTTATATCATATTCGGAGAAGTTTGAGATCATTCC
TCTCAATCGTAAAACCAAATGAAGCGTTGATGCATCTTTAATTCCATAAT
AGCTCAATGTTCGACCAGATTCCAGCTGTTTACCAGCGAAAACCAATCGT
TGTATTTCCACTGgagttctttctttttcaaagatcATTTCTTTGACGTC
ATCGACTTCGTTTCTTGGATTCACACTCAAAGGAATCGTTTTGCCAGTTA
ATGTTTTAATAAATATCTCCATTTTAT
Run BLAST on NCBI

protein sequence of TCONS_00063660-protein

>TCONS_00063660-protein ID=TCONS_00063660-protein|Name=TCONS_00063660-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
KMEIFIKTLTGKTIPLSVNPRNEVDDVKEMIFEKERTPVEIQRLVFAGKQ
LESGRTLSYYGIKDASTLHLVLRLRGMISNFSEYDISDPLIAFLMKGDVD
SVEISEELLKKKMRECEGYLENSTLKFEHTGIKMLALREKRKLMGVADCV
FSLQQIQGKPGSIRQDIKILLPNGSLQKITGSNTIEAKLKSHHSEPPEDL
KVVLRRTAPTDGCLPWHVDGYYSRATVQYTLNDDREYKGGRLCFYTEDLG
LYVPRRPAGTLSIHTKEMHGVSRLISGVRYVLFVVEPTNDLGGTTENIVD
LASNNMLQSMLATMDDNI
Run BLAST on NCBI

transcript from alignment at scaffold_397:16207..17433

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063660 ID=TCONS_00063660|Name=TCONS_00063660|organism=Clytia hemisphaerica|type=transcript|length=1227bp|location=Sequence derived from alignment at scaffold_397:16207..17433 (Clytia hemisphaerica)
ATAAAATGGAGATATTTATTAAAACATTAACTGGCAAAACGATTCCTTTG
AGTGTGAATCCAAGAAACGAAGTCGATGACGTCAAAGAAATgatctttga
aaaagaaagaactcCAGTGGAAATACAACGATTGGTTTTCGCTGGTAAAC
AGCTGGAATCTGGTCGAACATTGAGCTATTATGGAATTAAAGATGCATCA
ACGCTTCATTTGGTTTTACGATTGAGAGGAATGATCTCAAACTTCTCCGA
ATATGATATAAGTGACCCCCTTATTGCATTTCTGATGAAAGGTGATGTGG
ACAGTGTTGAAATATCAGAAGagttattgaaaaagaaaatgcgtgaatgc
gaaGGCTATCTTGAAAATTCTACACTGAAGTTTGAGCATACAGGGATTAA
GATGCTTGCTTTACGTGAAAAACGAAAATTGATGGGTGTGGCTGATTGTG
TATTCTCCTTACAACAAATCCAAGGAAAACCAGGTTCTATACGTCAAGAC
ATCAAAATCCTGTTACCTAACGGTTCACTGCAGAAAATCACAGGTTCAAA
TACAATAGAAGCAAAATTGAAGTCGCACCATTCAGAACCCCCAGAAGATC
TAAAAGTTGTTCTGAGACGAACAGCTCCAACTGATGGCTGTTTACCGTGG
CACGTAGATGGGTATTATTCTAGGGCAACCGTTCAGTATACATTGAATGA
CGACAGGGAATATAAGGGAGGTAGATTATGTTTTTATACTGAGGATCTAG
GTTTGTATGTCCCTCGCCGACCGGCCGGTACGTTATCTATCCATACCAAA
GAAATGCATGGCGTGTCAAGATTGATCAGCGGCGTACGTTATGTATTGTT
CGTGGTCGAACCTACTAATGATTTGGGTGGCACAACAGAAAATATAGTCG
ATCTAGCTTCAAACAATATGCTACAAAGTATGTTAGCTACAATGGACGAC
AACATATGAAACAATATACAAGGTACCCTGGGAAGGTACCTCTTCATCAA
AGTAAACGAAGGGAAATTGCACTTCTACTAGACGATACACTTCTACTTGA
AACTcgcatgaattttttttatagcacatattttttataaaagcaagTAG
ATTTTGTCTCAGCCTCATCTCAGATTGCATTTGTAAAATTTCGGATTTCT
TGAATTATTAATAATATCTTTATACAaatcaattttccaatttcattTCA
TCGCATGATTTTGCATCGATTTGTGCC

Coding sequence (CDS) from alignment at scaffold_397:16207..17433

>TCONS_00063660 ID=TCONS_00063660|Name=TCONS_00063660|organism=Clytia hemisphaerica|type=CDS|length=957bp|location=Sequence derived from alignment at scaffold_397:16207..17433 (Clytia hemisphaerica)
AAAATGGAGATATTTATTAAAACATTAACTGGCAAAACGATTCCTTTGAG
TGTGAATCCAAGAAACGAAGTCGATGACGTCAAAGAAATgatctttgaaa
aagaaagaactcCAGTGGAAATACAACGATTGGTTTTCGCTGGTAAACAG
CTGGAATCTGGTCGAACATTGAGCTATTATGGAATTAAAGATGCATCAAC
GCTTCATTTGGTTTTACGATTGAGAGGAATGATCTCAAACTTCTCCGAAT
ATGATATAAGTGACCCCCTTATTGCATTTCTGATGAAAGGTGATGTGGAC
AGTGTTGAAATATCAGAAGagttattgaaaaagaaaatgcgtgaatgcga
aGGCTATCTTGAAAATTCTACACTGAAGTTTGAGCATACAGGGATTAAGA
TGCTTGCTTTACGTGAAAAACGAAAATTGATGGGTGTGGCTGATTGTGTA
TTCTCCTTACAACAAATCCAAGGAAAACCAGGTTCTATACGTCAAGACAT
CAAAATCCTGTTACCTAACGGTTCACTGCAGAAAATCACAGGTTCAAATA
CAATAGAAGCAAAATTGAAGTCGCACCATTCAGAACCCCCAGAAGATCTA
AAAGTTGTTCTGAGACGAACAGCTCCAACTGATGGCTGTTTACCGTGGCA
CGTAGATGGGTATTATTCTAGGGCAACCGTTCAGTATACATTGAATGACG
ACAGGGAATATAAGGGAGGTAGATTATGTTTTTATACTGAGGATCTAGGT
TTGTATGTCCCTCGCCGACCGGCCGGTACGTTATCTATCCATACCAAAGA
AATGCATGGCGTGTCAAGATTGATCAGCGGCGTACGTTATGTATTGTTCG
TGGTCGAACCTACTAATGATTTGGGTGGCACAACAGAAAATATAGTCGAT
CTAGCTTCAAACAATATGCTACAAAGTATGTTAGCTACAATGGACGACAA
CATATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039902XLOC_039902Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063660-proteinTCONS_00063660-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063660-exon-scaffold_397-1491911889:16207..17433TCONS_00063660-exon-scaffold_397-1491911889:16207..17433Clytia hemisphaericaexon
TCONS_00063660-exon-scaffold_397-1510915933:16207..17433TCONS_00063660-exon-scaffold_397-1510915933:16207..17433Clytia hemisphaericaexon
TCONS_00063660-exon-scaffold_397-1575043694:16207..17433TCONS_00063660-exon-scaffold_397-1575043694:16207..17433Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_397supercontigscaffold_397:16207..17433 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.209103	0.271877	0.236757	0.193025	0.84596	0.705627	0.672086	0.713092	0.26431	0.254637	0.105924	0.185682	5.12232	2.86439	0.138525	0.276079	0.49708	0.429045	12.633	17.2125	0.0673908	0.197225	0.0799176	0.145313	1.30961	0.5677	0.0477869	0.0509994	0.0773625	0.11823
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00063660 vs. Swiss-Prot (Human)
Match: RL40 (Ubiquitin-60S ribosomal protein L40 OS=Homo sapiens GN=UBA52 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 5.339e-24
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = -3 
Query:  992 MEIFIKTLTGKTIPLSVNPRNEVDDVKEMIFEKERTPVEIQRLVFAGKQLESGRTLSYYGIKDASTLHLVLRLRGMI 1222
            M+IF+KTLTGKTI L V P + +++VK  I +KE  P + QRL+FAGKQLE GRTLS Y I+  STLHLVLRLRG I
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77
The following BLAST results are available for this feature:
BLAST of TCONS_00063660 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL405.339e-2463.64Ubiquitin-60S ribosomal protein L40 OS=Homo sapien... [more]
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