TCONS_00061366-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061366-protein
Unique NameTCONS_00061366-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length227

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061366-protein ID=TCONS_00061366-protein|Name=TCONS_00061366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
MAVAQDEAAAVAQIVIPRQIEISSLPTFGLDPADDITEFFVNYEITIEFY
ELTDELKAKLLTRVLKDRALTFYRTLTADVRANYHNLKQVLTDEFDVPQI
KYRKRQLLHQISQHGEPISTYLSRLEKLAQNLNVPDQTKLDIMIAGLDSG
YRNYLQMKQPETYREATHALLLKEAVDPPMEYLIEDLMNQIKLIKTDKEQ
GDCEQSVGCFICKEEGHISRYCPIKYD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038505XLOC_038505Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061366TCONS_00061366Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR005162Retrotrans_gag_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 208..224
e-value: 0.003
score: 26.8
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 149..225
e-value: 5.0E-6
score: 26.2
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 208..223
e-value: 1.5E-5
score: 24.7
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 209..223
score: 9.142
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 203..225
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 63..148
e-value: 9.1E-11
score: 41.8

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061366-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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