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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061366 ID=TCONS_00061366|Name=TCONS_00061366|organism=Clytia hemisphaerica|type=transcript|length=1274bp
gTGACAAAGTAAATAAGATTCAATTACGGTAAAATACTTTTCTTAGAATA
TATgctcttttttttcaatcaatttagttCAATAGTTTCTTTCTCACAGT
TAATCATATTTAATGGGGCAATATCTGGAAATGTGTCCTTCCTCTTTGCA
TATGAAACAACCTACCGATTGTTCACAATCGCCCTGTTCTTTATCGGTTT
TAATAAGCTTTATTTGGTTCATTAAATCTTCAATTAAATACTCCATTGGT
GGATCAACTGCCTCTTTCAGCAAAAGTGCATGGGTTGCCTCACGGTACGT
CTCTGGTTGCTTCATTTGTAAGTAGTTCCTGTATCCAGAATCTAGTCCAG
CAATCATGATATCAAGTTTTGTTTGGTCGGGAACATTAAGATTTTGAGCA
AGTTTCTCAAGTCGGCTCAAGTACGTGCTGATTGGCTCTCCATGTTGGGA
GATTTGGTGTAAGAGTTGGCGTTTTCGATACTTGATTTGTGGCACGTCGA
ATTCATCTGTAAGTACTTGTTTCAAATTATGGTAGTTAGCACGGACGTCT
GCGGTAAGGGTGCGATAAAATGTAAGTGCCCTGTCTTTTAATACTCGAGT
GAGGAGCTTAGCTTTTAGCTCGTCTGTGAGCTCGTaaaattcaattgtta
tttCATAGTTGACGAAAAATTCGGTTATATCATCCGCCGGGTCGAGTCCA
AATGTTGGTAATGACGATATTTCGATTTGTCTTGGAATTACAATTTGTGC
AACAGCAGCGGCTTCATCTTGGGCTACGGCCATTTCTGCTTGCTGTTGAA
AACGGTTTATGTCTCTGTACAATTGTCTGTAATTGTTGTCGTTTTGCCTT
TTTAGGATGAGTTGACGCGGTCAGATATTCCGGATTTACTGACGGTCTCC
TTTCTGATTACGGGCAAGCTTCTTTATCTCGATGTGGTTCTTGAATGTTC
AATTAAAATCGGGTTGTTCTCAGTGGTCTGTCTTTTCTACTTCTAATGAT
CTGTAATCGATATGTTGGTTCATTAATTGGTTTCAGTTATAATTTTTCAC
TTAATTGTTCTacttctaaaagaaaaaaatttgaatttaatgcATCGTCT
TTTGTTCATTGTCTTTTTTTAGATATTGTTTATTGAAATATGTGTAttca
gtttttgttttgttatttcTTTTTAGCTATACGTTTTGCTCGAGTCTTCT
TTGCTTcttatttctttcaaattacCGCGTAATTTGCTCGTATACATGTA
TACCAGTCAAATCCCTGATTTGAC Run BLAST on NCBI protein sequence of TCONS_00061366-protein >TCONS_00061366-protein ID=TCONS_00061366-protein|Name=TCONS_00061366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
MAVAQDEAAAVAQIVIPRQIEISSLPTFGLDPADDITEFFVNYEITIEFY
ELTDELKAKLLTRVLKDRALTFYRTLTADVRANYHNLKQVLTDEFDVPQI
KYRKRQLLHQISQHGEPISTYLSRLEKLAQNLNVPDQTKLDIMIAGLDSG
YRNYLQMKQPETYREATHALLLKEAVDPPMEYLIEDLMNQIKLIKTDKEQ
GDCEQSVGCFICKEEGHISRYCPIKYD Run BLAST on NCBI transcript from alignment at scaffold_357:51225..52498 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061366 ID=TCONS_00061366|Name=TCONS_00061366|organism=Clytia hemisphaerica|type=transcript|length=1274bp|location=Sequence derived from alignment at scaffold_357:51225..52498 (Clytia hemisphaerica)
GTCAAATCAGGGATTTGACTGGTATACATGTATACGAGCAAATTACGCGg
taatttgaaagaaataagAAGCAAAGAAGACTCGAGCAAAACGTATAGCT
AAAAAgaaataacaaaacaaaaactgaaTACACATATTTCAATAAACAAT
ATCTAAAAAAAGACAATGAACAAAAGACGATgcattaaattcaaattttt
ttcttttagaagtAGAACAATTAAGTGAAAAATTATAACTGAAACCAATT
AATGAACCAACATATCGATTACAGATCATTAGAAGTAGAAAAGACAGACC
ACTGAGAACAACCCGATTTTAATTGAACATTCAAGAACCACATCGAGATA
AAGAAGCTTGCCCGTAATCAGAAAGGAGACCGTCAGTAAATCCGGAATAT
CTGACCGCGTCAACTCATCCTAAAAAGGCAAAACGACAACAATTACAGAC
AATTGTACAGAGACATAAACCGTTTTCAACAGCAAGCAGAAATGGCCGTA
GCCCAAGATGAAGCCGCTGCTGTTGCACAAATTGTAATTCCAAGACAAAT
CGAAATATCGTCATTACCAACATTTGGACTCGACCCGGCGGATGATATAA
CCGAATTTTTCGTCAACTATGaaataacaattgaattttACGAGCTCACA
GACGAGCTAAAAGCTAAGCTCCTCACTCGAGTATTAAAAGACAGGGCACT
TACATTTTATCGCACCCTTACCGCAGACGTCCGTGCTAACTACCATAATT
TGAAACAAGTACTTACAGATGAATTCGACGTGCCACAAATCAAGTATCGA
AAACGCCAACTCTTACACCAAATCTCCCAACATGGAGAGCCAATCAGCAC
GTACTTGAGCCGACTTGAGAAACTTGCTCAAAATCTTAATGTTCCCGACC
AAACAAAACTTGATATCATGATTGCTGGACTAGATTCTGGATACAGGAAC
TACTTACAAATGAAGCAACCAGAGACGTACCGTGAGGCAACCCATGCACT
TTTGCTGAAAGAGGCAGTTGATCCACCAATGGAGTATTTAATTGAAGATT
TAATGAACCAAATAAAGCTTATTAAAACCGATAAAGAACAGGGCGATTGT
GAACAATCGGTAGGTTGTTTCATATGCAAAGAGGAAGGACACATTTCCAG
ATATTGCCCCATTAAATATGATTAACTGTGAGAAAGAAACTATTGaacta
aattgattgaaaaaaaagagcATATATTCTAAGAAAAGTATTTTACCGTA
ATTGAATCTTATTTACTTTGTCAc Coding sequence (CDS) from alignment at scaffold_357:51225..52498 >TCONS_00061366 ID=TCONS_00061366|Name=TCONS_00061366|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_357:51225..52498 (Clytia hemisphaerica)
ATGGCCGTAGCCCAAGATGAAGCCGCTGCTGTTGCACAAATTGTAATTCC
AAGACAAATCGAAATATCGTCATTACCAACATTTGGACTCGACCCGGCGG
ATGATATAACCGAATTTTTCGTCAACTATGaaataacaattgaattttAC
GAGCTCACAGACGAGCTAAAAGCTAAGCTCCTCACTCGAGTATTAAAAGA
CAGGGCACTTACATTTTATCGCACCCTTACCGCAGACGTCCGTGCTAACT
ACCATAATTTGAAACAAGTACTTACAGATGAATTCGACGTGCCACAAATC
AAGTATCGAAAACGCCAACTCTTACACCAAATCTCCCAACATGGAGAGCC
AATCAGCACGTACTTGAGCCGACTTGAGAAACTTGCTCAAAATCTTAATG
TTCCCGACCAAACAAAACTTGATATCATGATTGCTGGACTAGATTCTGGA
TACAGGAACTACTTACAAATGAAGCAACCAGAGACGTACCGTGAGGCAAC
CCATGCACTTTTGCTGAAAGAGGCAGTTGATCCACCAATGGAGTATTTAA
TTGAAGATTTAATGAACCAAATAAAGCTTATTAAAACCGATAAAGAACAG
GGCGATTGTGAACAATCGGTAGGTTGTTTCATATGCAAAGAGGAAGGACA
CATTTCCAGATATTGCCCCATTAAATATGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061366-exon-scaffold_357-1491911889:51225..52498 | TCONS_00061366-exon-scaffold_357-1491911889:51225..52498 | Clytia hemisphaerica | exon |
| TCONS_00061366-exon-scaffold_357-1510915933:51225..52498 | TCONS_00061366-exon-scaffold_357-1510915933:51225..52498 | Clytia hemisphaerica | exon |
| TCONS_00061366-exon-scaffold_357-1575043694:51225..52498 | TCONS_00061366-exon-scaffold_357-1575043694:51225..52498 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_357 | supercontig | scaffold_357:51225..52498 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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