TCONS_00060458-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00060458-protein
Unique Name	TCONS_00060458-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	320

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00060458-protein ID=TCONS_00060458-protein|Name=TCONS_00060458-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MSRGILFFMVILVAASTILNTLVISVLARERKHKFQLRHALLISLAVTDI
VTGLCGFTLESFSFSGDTCIAAGFLVTLLSLVSIAHMGALAIERYLSISK
PFISIKISQSKFYAILFIVASWVYGSMWALFPWFGWGRYAYESLTNHRCS
IDLVSRSPNIVSYNYTLLVFCYIVPIIIMMTSFCIIKREIAGMLQKVKDS
TGKNSKSATATVKQERTFTVVVAVMLTSFLLAWTPYALCVFLVSLRIEIS
PDFLDVSAYLGKSSIIHNPIIYVFLYKQFRTGLLRLFLACFRIPPNSVVP
ESSFVGSQTEQNNRTSKTGL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_038024	XLOC_038024	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00060458	TCONS_00060458	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 218..242 score: 25.22 coord: 254..280 score: 33.07 coord: 38..59 score: 23.28 coord: 4..28 score: 21.3 coord: 164..187 score: 16.02 coord: 76..98 score: 28.49
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 20..272 e-value: 3.0E-28 score: 98.7
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 82..98
None	No IPR available	GENE3D	1.20.1070.10		coord: 4..319 e-value: 9.7E-47 score: 158.9
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 6..297
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 19..272 score: 27.954

Blast

[Close]

BLAST of TCONS_00060458-protein vs. Swiss-Prot (Human)
Match: OPSR (Long-wave-sensitive opsin 1 OS=Homo sapiens GN=OPN1LW PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.508e-35
Identity = 89/294 (30.27%), Postives = 146/294 (49.66%), Query Frame = 0

Query:    8 FMVILVAASTILNTLVISVLARERKHKFQLRHAL---LISLAVTDIVTGLCGFTLE-------SFSFSGDTCIAAGFLVTLLSLVSIAHMGALAIERYLSISKPFISIKISQSKFYAILFIVASWVYGSMWALFPWFGWGRYAYESLTNHRCSIDLVSRS--PNIVSYNYTLLVFCYIVPIIIMMTSFCIIKREIAGMLQKVKDSTGKNSKSATATVKQERTFTVVVAVMLTSFLLAWTPYAL--CVFLVSLRIEISPDFLDVSAYLGKSSIIHNPIIYVFLYKQFRTGLLRLF 287
            +M+ +V AS   N LV++   + +K    LRH L   L++LAV D+   +   T+         F      C+  G+ V+L  +  +  +  ++ ER+L + KPF +++       AI+ I  SW++ ++W   P FGW RY    L    C  D+ S S  P + SY   L+V C I+P+ I+M   C ++  +A        +  K  K + +T K E+  T +V VM+ ++ + W PY    C    +      P    + AY  KS+ I+NP+IYVF+ +QFR  +L+LF
Sbjct:   59 WMIFVVTASVFTNGLVLAATMKFKK----LRHPLNWILVNLAVADLAETVIASTISIVNQVSGYFVLGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGNVRFDAK--LAIVGIAFSWIWSAVWTAPPIFGWSRYWPHGLKT-SCGPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIM--LCYLQVWLA------IRAVAKQQKESESTQKAEKEVTRMVVVMIFAYCVCWGPYTFFACFAAANPGYAFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQLF 337

The following BLAST results are available for this feature:

BLAST of TCONS_00060458-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00060458-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
OPSR	3.508e-35	30.27	Long-wave-sensitive opsin 1 OS=Homo sapiens GN=OPN...	[more]

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TCONS_00060458-protein (polypeptide) - C. hemisphaerica