TCONS_00060458 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060458
Unique NameTCONS_00060458
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1975

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060458 ID=TCONS_00060458|Name=TCONS_00060458|organism=Clytia hemisphaerica|type=transcript|length=1975bp
AAAAACACTACTTTCCTTTGGTAATTCATCTGGGATATGTCGAAATAAAA
TGTTACTTTTCCTACTGTCAAAATTGAATAAACACCATATTCTTCACTAC
AATTACAGATATTAATATACTTGAGGTCATAAATAGAcctaatttttcga
aattatacACCTTGATAAAAACAGTCctttccttttgataaaaaacacta
ctttatttttttcaaaattaccctactttgtttttgtcaaaaatatccTA
CTttcctttttgataaaaaacactACTTTCCTTTGCCAGTTCCTGTGGaa
gaaatcaaattaaaattttacttgaaattaaattaattgaGGCCCTCTTA
GGCACTTCTTTTTAGTTCATATCAAATTCTCACTCACGTTGAGCTTTTTA
TAGAAGACAAATTCTCAATGCACCCTCGCATTATCATCTCCTGCTGCACC
CTCACAGTGTAAAATATATGAACTCATACTGCACCCTCTGATccgtaaaa
acaacaaaaaacgaTAAACGATATCCTTTCTCCCTTATATTAAAAAGGGC
AACggaaaaattgagaatatacTAGAGAGTTTGAAAGACGTGTGATGAGT
TTGGAAAtagctagtctgaatcgcagacctctatagatatacttcctata
tttTCTCTAAGAAATCTTTTCGCtggaggatgagcagaagcctaggaGAT
AGCTACCACTTTTATTAACACGCGAAATCTTATCATCAAATTAGTAATTT
ACATAACGACTTTTTCTTGACATATCTTTCGGAACCGCAAATAAATTCAG
TGCTGCACATTCCCAGCtgtcacacaacgttgttttaacgttcatctgac
gttatatggacgttgtgaatattaTATTAACGTTTAAATGAACGTTGATT
GTCAGCTGGGGTGTCCCTTGCTTTACAAACCAGTTTTAGATGTTCTATTA
TTTTGTTCTGTTTGGCTACCAACAAAAGAAGATTCTGGAACAACACTGTT
CGGTGGAATCCGAAAACATGCCAAGAACAATCTCAATAATCCCGTTCGGA
ATTGTTTGTATAAGAAGACGTAGATGATCGGATTATGAATGATGGAACTT
TTCCCTAAATACGCAGAAACGTCTAAAAAGTCTGGCGAAATTTCAATCCT
TAGTGAAACAAGGAATACGCAGAGTGCGTAAGGAGTCCACGCAAGAAGAA
ACGACGTTAACATTACGGCAACCACGACGGTAAACGTACGTTCTTGTTTA
ACGGTAGCCGTTGCGGACTTTGAGTTTTTTCCGGTCGaatctttgacttt
ttgtaaCATGCCGGCTATTTCTCGTTTAATGATGcagaatgacgtcatca
taatgATTATTGGAACGATGTAACAGAACACCAAAAGTGTGTAATTGTAG
CTGACGATATTTGGTGATCGCGACACCAAGTCGATACTACACCGATGGTT
TGTGAGAGACTCGTACGCGTAACGCCCCCATCCGAACCACGGGAAAAGCG
CCCACATGCTACCGTAAACCCAACTGGCCACAATGAACAGAATAGCATAG
AATTTGCTTTGTGATATTTTTATACTTATGAATGGTTTCGATATTGAAAG
ATAACGCTCGATGGCAAGCGCCCCCATATGAGCGATTGAAACAAGCGATA
AAAGAGTGACCAAAAAGCCGGCAGCGATGCATGTGTCTCCTGAGAAGCTA
AACGACTCCAGTGTGAAACCACACAAACCAGTCACGATGTCGGTCACGGC
AAGACTGATCAGAAGCGCATGACGTAATTGGAATTTGTGTTTACGTTCAC
GGGCTAGAACGGAAATGACGAGGGTGTTGAGGATGGTGGACGCAGCCACT
AGTATGACCATGAAGAATAAGATGCCACGACTCATAGCGAGAACGTATTT
ATTGTGATTTCTACTGAAAAGTCAGAGTAAACTATTATTCTCATATTTCA
CATTTATTCAAATGACCCAGGAGAG
Run BLAST on NCBI

protein sequence of TCONS_00060458-protein

>TCONS_00060458-protein ID=TCONS_00060458-protein|Name=TCONS_00060458-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MSRGILFFMVILVAASTILNTLVISVLARERKHKFQLRHALLISLAVTDI
VTGLCGFTLESFSFSGDTCIAAGFLVTLLSLVSIAHMGALAIERYLSISK
PFISIKISQSKFYAILFIVASWVYGSMWALFPWFGWGRYAYESLTNHRCS
IDLVSRSPNIVSYNYTLLVFCYIVPIIIMMTSFCIIKREIAGMLQKVKDS
TGKNSKSATATVKQERTFTVVVAVMLTSFLLAWTPYALCVFLVSLRIEIS
PDFLDVSAYLGKSSIIHNPIIYVFLYKQFRTGLLRLFLACFRIPPNSVVP
ESSFVGSQTEQNNRTSKTGL
Run BLAST on NCBI

transcript from alignment at scaffold_341:352041..354015

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060458 ID=TCONS_00060458|Name=TCONS_00060458|organism=Clytia hemisphaerica|type=transcript|length=1975bp|location=Sequence derived from alignment at scaffold_341:352041..354015 (Clytia hemisphaerica)
CTCTCCTGGGTCATTTGAATAAATGTGAAATATGAGAATAATAGTTTACT
CTGACTTTTCAGTAGAAATCACAATAAATACGTTCTCGCTATGAGTCGTG
GCATCTTATTCTTCATGGTCATACTAGTGGCTGCGTCCACCATCCTCAAC
ACCCTCGTCATTTCCGTTCTAGCCCGTGAACGTAAACACAAATTCCAATT
ACGTCATGCGCTTCTGATCAGTCTTGCCGTGACCGACATCGTGACTGGTT
TGTGTGGTTTCACACTGGAGTCGTTTAGCTTCTCAGGAGACACATGCATC
GCTGCCGGCTTTTTGGTCACTCTTTTATCGCTTGTTTCAATCGCTCATAT
GGGGGCGCTTGCCATCGAGCGTTATCTTTCAATATCGAAACCATTCATAA
GTATAAAAATATCACAAAGCAAATTCTATGCTATTCTGTTCATTGTGGCC
AGTTGGGTTTACGGTAGCATGTGGGCGCTTTTCCCGTGGTTCGGATGGGG
GCGTTACGCGTACGAGTCTCTCACAAACCATCGGTGTAGTATCGACTTGG
TGTCGCGATCACCAAATATCGTCAGCTACAATTACACACTTTTGGTGTTC
TGTTACATCGTTCCAATAATcattatgatgacgtcattctgCATCATTAA
ACGAGAAATAGCCGGCATGttacaaaaagtcaaagattCGACCGGAAAAA
ACTCAAAGTCCGCAACGGCTACCGTTAAACAAGAACGTACGTTTACCGTC
GTGGTTGCCGTAATGTTAACGTCGTTTCTTCTTGCGTGGACTCCTTACGC
ACTCTGCGTATTCCTTGTTTCACTAAGGATTGAAATTTCGCCAGACTTTT
TAGACGTTTCTGCGTATTTAGGGAAAAGTTCCATCATTCATAATCCGATC
ATCTACGTCTTCTTATACAAACAATTCCGAACGGGATTATTGAGATTGTT
CTTGGCATGTTTTCGGATTCCACCGAACAGTGTTGTTCCAGAATCTTCTT
TTGTTGGTAGCCAAACAGAACAAAATAATAGAACATCTAAAACTGGTTTG
TAAAGCAAGGGACACCCCAGCTGACAATCAACGTTCATTTAAACGTTAAT
Ataatattcacaacgtccatataacgtcagatgaacgttaaaacaacgtt
gtgtgacaGCTGGGAATGTGCAGCACTGAATTTATTTGCGGTTCCGAAAG
ATATGTCAAGAAAAAGTCGTTATGTAAATTACTAATTTGATGATAAGATT
TCGCGTGTTAATAAAAGTGGTAGCTATCtcctaggcttctgctcatcctc
caGCGAAAAGATTTCTTAGAGAaaatataggaagtatatctatagaggtc
tgcgattcagactagctaTTTCCAAACTCATCACACGTCTTTCAAACTCT
CTAgtatattctcaatttttccGTTGCCCTTTTTAATATAAGGGAGAAAG
GATATCGTTTAtcgttttttgttgtttttacggATCAGAGGGTGCAGTAT
GAGTTCATATATTTTACACTGTGAGGGTGCAGCAGGAGATGATAATGCGA
GGGTGCATTGAGAATTTGTCTTCTATAAAAAGCTCAACGTGAGTGAGAAT
TTGATATGAACTAAAAAGAAGTGCCTAAGAGGGCCtcaattaatttaatt
tcaagtaaaattttaatttgatttcttCCACAGGAACTGGCAAAGGAAAG
TagtgttttttatcaaaaaggaaAGTAggatatttttgacaaaaacaaag
tagggtaattttgaaaaaaataaagtagtgttttttatcaaaaggaaagG
ACTGTTTTTATCAAGGTgtataatttcgaaaaattaggTCTATTTATGAC
CTCAAGTATATTAATATCTGTAATTGTAGTGAAGAATATGGTGTTTATTC
AATTTTGACAGTAGGAAAAGTAACATTTTATTTCGACATATCCCAGATGA
ATTACCAAAGGAAAGTAGTGTTTTT

Coding sequence (CDS) from alignment at scaffold_341:352041..354015

>TCONS_00060458 ID=TCONS_00060458|Name=TCONS_00060458|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at scaffold_341:352041..354015 (Clytia hemisphaerica)
ATGAGTCGTGGCATCTTATTCTTCATGGTCATACTAGTGGCTGCGTCCAC
CATCCTCAACACCCTCGTCATTTCCGTTCTAGCCCGTGAACGTAAACACA
AATTCCAATTACGTCATGCGCTTCTGATCAGTCTTGCCGTGACCGACATC
GTGACTGGTTTGTGTGGTTTCACACTGGAGTCGTTTAGCTTCTCAGGAGA
CACATGCATCGCTGCCGGCTTTTTGGTCACTCTTTTATCGCTTGTTTCAA
TCGCTCATATGGGGGCGCTTGCCATCGAGCGTTATCTTTCAATATCGAAA
CCATTCATAAGTATAAAAATATCACAAAGCAAATTCTATGCTATTCTGTT
CATTGTGGCCAGTTGGGTTTACGGTAGCATGTGGGCGCTTTTCCCGTGGT
TCGGATGGGGGCGTTACGCGTACGAGTCTCTCACAAACCATCGGTGTAGT
ATCGACTTGGTGTCGCGATCACCAAATATCGTCAGCTACAATTACACACT
TTTGGTGTTCTGTTACATCGTTCCAATAATcattatgatgacgtcattct
gCATCATTAAACGAGAAATAGCCGGCATGttacaaaaagtcaaagattCG
ACCGGAAAAAACTCAAAGTCCGCAACGGCTACCGTTAAACAAGAACGTAC
GTTTACCGTCGTGGTTGCCGTAATGTTAACGTCGTTTCTTCTTGCGTGGA
CTCCTTACGCACTCTGCGTATTCCTTGTTTCACTAAGGATTGAAATTTCG
CCAGACTTTTTAGACGTTTCTGCGTATTTAGGGAAAAGTTCCATCATTCA
TAATCCGATCATCTACGTCTTCTTATACAAACAATTCCGAACGGGATTAT
TGAGATTGTTCTTGGCATGTTTTCGGATTCCACCGAACAGTGTTGTTCCA
GAATCTTCTTTTGTTGGTAGCCAAACAGAACAAAATAATAGAACATCTAA
AACTGGTTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038024XLOC_038024Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060458-proteinTCONS_00060458-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060458-exon-scaffold_341-1491911889:352041..354015TCONS_00060458-exon-scaffold_341-1491911889:352041..354015Clytia hemisphaericaexon
TCONS_00060458-exon-scaffold_341-1510915933:352041..354015TCONS_00060458-exon-scaffold_341-1510915933:352041..354015Clytia hemisphaericaexon
TCONS_00060458-exon-scaffold_341-1575043694:352041..354015TCONS_00060458-exon-scaffold_341-1575043694:352041..354015Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_341supercontigscaffold_341:352041..354015 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0816029	0.0397041	0.112388	0.038574	0.0325835	0.0444918	3.42609	3.91035	3.8833	4.07426	5.35651	3.22394	0.305673	0.135111	0.10576	0.0868693	0.13995	0.126462	0.182238	0.232661	0.393563	0.230762	0.187567	0.106318	0.24086	0.177684	0.0284386	0.0312301	0.0230958	0.024429
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00060458 vs. Swiss-Prot (Human)
Match: OPSR (Long-wave-sensitive opsin 1 OS=Homo sapiens GN=OPN1LW PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.470e-27
Identity = 89/294 (30.27%), Postives = 146/294 (49.66%), Query Frame = -1 
Query: 1025 FMVILVAASTILNTLVISVLARERKHKFQLRHAL---LISLAVTDIVTGLCGFTLE-------SFSFSGDTCIAAGFLVTLLSLVSIAHMGALAIERYLXXXXXXXXXXXXXXKFYAILFIVASWVYGSMWALFPWFGWGRYAYESLTNHRCSIDLVSRS--PNIVSYNYTLLVFCYIVPIIIMMTSFCIIKREIAGMLQKVKDSTGKNSKSATATVKQERTFTVVVAVMLTSFLLAWTPYAL--CVFLVSLRIEISPDFLDVSAYLGKSSIIHNPIIYVFLYKQFRTGLLRLF 1864
            +M+ +V AS   N LV++   + +K    LRH L   L++LAV D+   +   T+         F      C+  G+ V+L  +  +  +  ++ ER+L + KPF +++       AI+ I  SW++ ++W   P FGW RY    L    C  D+ S S  P + SY   L+V C I+P+ I+M   C ++  +A        +  K  K + +T K E+  T +V VM+ ++ + W PY    C    +      P    + AY  KS+ I+NP+IYVF+ +QFR  +L+LF
Sbjct:   59 WMIFVVTASVFTNGLVLAATMKFKK----LRHPLNWILVNLAVADLAETVIASTISIVNQVSGYFVLGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGNVRFDAKL--AIVGIAFSWIWSAVWTAPPIFGWSRYWPHGLKT-SCGPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIM--LCYLQVWLA------IRAVAKQQKESESTQKAEKEVTRMVVVMIFAYCVCWGPYTFFACFAAANPGYAFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQLF 337
The following BLAST results are available for this feature:
BLAST of TCONS_00060458 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OPSR1.470e-2730.27Long-wave-sensitive opsin 1 OS=Homo sapiens GN=OPN... [more]
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