TCONS_00060108-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060108-protein
Unique NameTCONS_00060108-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length130

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060108-protein ID=TCONS_00060108-protein|Name=TCONS_00060108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MSSISELPCYTLINHPSESESSSENQLKADLENGDVKVRTVALKKVMYQI
LNGEKMPSLLMTIIRFILPMQDHQIKKLLLIFWEIVPKTGADGKLLHEMI
LVCDAYRRDLEHPNEFIRGSTLRFLCKLKV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037818XLOC_037818Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060108TCONS_00060108Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002553Clathrin/coatomer_adapt-like_N
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0030117membrane coat
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030117 membrane coat
molecular_function GO:0005488 binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002553Clathrin/coatomer adaptor, adaptin-like, N-terminalPFAMPF01602Adaptin_Ncoord: 22..130
e-value: 1.9E-24
score: 86.1
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 18..130
e-value: 1.1E-22
score: 79.6
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 25..128

Blast
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BLAST of TCONS_00060108-protein vs. Swiss-Prot (Human)
Match: COPB (Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=1 SV=3)

HSP 1 Score: 202.601 bits (514), Expect = 1.048e-61
Identity = 96/127 (75.59%), Postives = 108/127 (85.04%), Query Frame = 0 
Query:    3 SISELPCYTLINHPSESESSSENQLKADLENGDVKVRTVALKKVMYQILNGEKMPSLLMTIIRFILPMQDHQIKKLLLIFWEIVPKTGADGKLLHEMILVCDAYRRDLEHPNEFIRGSTLRFLCKLK 129
            + +E  CYTLIN P +SE  SE  LK DLE GDVK +T ALKKV+  ILNGEK+P LLMTIIRF+LP+QDH IKKLLL+FWEIVPKT  DG+LLHEMILVCDAYR+DL+HPNEFIRGSTLRFLCKLK
Sbjct:    2 TAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLK 128
The following BLAST results are available for this feature:
BLAST of TCONS_00060108-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COPB1.048e-6175.59Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=... [more]
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