TCONS_00060108 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060108
Unique NameTCONS_00060108
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length614

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060108 ID=TCONS_00060108|Name=TCONS_00060108|organism=Clytia hemisphaerica|type=transcript|length=614bp
GTGAGAATCAGTCCCTGCATTCGGAGCTGGAATAACAAAAAGGAGTAAAA
AAACGAGTAACTCATCGGAAACACGGTGTAAAAACTCgggttttctttct
tttgaagtCACATGATCTAGCACGTCAACAAAATGGTAGCCCGAGTAGTG
ATCGAGAAAAAGAGGACACGAAGAAGAGTTTCGCCAAAAGTTCAAACACA
AATCTCAAGCGTCGCCTTTCAAAATGAGTTCTATCAGTGAACTCCCTTGC
TATACGCTCATCAACCATCCATCTGAAAGTGAAAGCTCTTCAGAGAACCA
ACTGAAAGCTGATTTGGAGAATGGAGATGTCAAAGTCCGAACTGTTGCTC
TTAAGAAAGTCATGTACCAAATTTTGAATGGTGAAAAAATGCCTTCACTA
CTGATGACAATAATTCGGTTCATTCTACCCATGCAAGACCACCAAATCAA
AAAGTTATTACTCATCTTCTGGGAAATTGTCCCAAAGACTGGAGCTGATG
GTAAATTACTGCATGAAATGATTTTGGTGTGTGATGCCTATCGTCGTGAT
TTGGAACATCCCAATGAGTTCATTCGAGGATCAACACTCAGATTCTTGTG
CAAACTTAAAGTAA
Run BLAST on NCBI

protein sequence of TCONS_00060108-protein

>TCONS_00060108-protein ID=TCONS_00060108-protein|Name=TCONS_00060108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MSSISELPCYTLINHPSESESSSENQLKADLENGDVKVRTVALKKVMYQI
LNGEKMPSLLMTIIRFILPMQDHQIKKLLLIFWEIVPKTGADGKLLHEMI
LVCDAYRRDLEHPNEFIRGSTLRFLCKLKV
Run BLAST on NCBI

transcript from alignment at scaffold_334:371387..381415+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060108 ID=TCONS_00060108|Name=TCONS_00060108|organism=Clytia hemisphaerica|type=transcript|length=10029bp|location=Sequence derived from alignment at scaffold_334:371387..381415+ (Clytia hemisphaerica)
GTGAGAATCAGTCCCTGCATTCGGAGCTGGAATAACAAAAAGGAGTAAAA
AAACGAGTAACTCATCGGAAACACGGTGTAAAAACTCgggttttctttct
tttgaagtCACATGATCTAGCACGTCAACAAAATGGTAGCCCGAGTAGTG
ATCGAGAAAAAGAGGACACGAAGAAGAGTTTCGCCAAAAGTTCAAACACA
AATCTCAAGCGTCGCCTTTCAAAATGAGTTCTATCAGTGAACTCCCTTGC
TATACGCTCATCAACCATCCATCTGAAAGTGAAAGCTCTTCAGAGAACCA
ACTGAAAGCTGATTTGGGTAAGTGCATTTTTATGCATTTGTATTTTTGGC
AAGTAAtatcattgtcttttctcttcaaagtttttacaattttgacaTAC
TTCATACTGGGAACCTGAATacctttgattacctttgatgtgtttcagca
aattctctgctcacttaacccgtggggtccggtgtttgaccatttcaaca
attgaattcgAGTCAGCCATCCTGTAAAAGGGAGATAGGCAAGGAGCAGT
GGCTTGTCGGGAACATCTTGGCCAGTCTGGAAAGGAGGGAAATGTTACGC
TGGAGCTGCGCCAACTTAACTGGGAAAAGTTGAAGGCAGCAGATCTCAAA
CCTCAAATCTATGCCGGAGATATCCGGCAGACTGGCATCTTGGAGAAATT
AAATTgatcaagttgttttttgaaggaatttttggaacatttggtCATGT
CACGTATTTTTCTTGGTAACACATTGAATAGTCTtgggcagttagtcaca
ctagcgtcccgccaaaacagttagtcacactagcgtcccgccaaaatgca
taccaaagattaatgctgcgaaagtgctatatcgtttacttgactctcga
GCAAAAAtatgcaccgcaaaacttctaaagagattcatgaaaaaataaac
cggcactttttaatgaaattaacattttcaaaaactttgagaaattgcct
aaaatttgagccatagatgaaaaagtttgagccaagccaaccttgaaaac
taatttgaagatcaacttcacaagaaaaagatctacgggggaggcagaac
ccacctagatccgcgcaccgccggataggctatttcccagaaattttgcc
ggacctcaaacaatgacccatttacatgttcgaaattatttttactttag
cgtataaacaaggccttaaaaatcgaagcgctgtctcgggaattgaatga
caaaatttggttggttgataatttggctgctgcacgttttattttgtttc
aaactttcaagttttgattaccataattgtcttgcgaacttgattcaggt
aactctcatccttgttgtgcaaatacatcctgtagatgactgatgttgNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCAGCTCTTCCAAATGT
TCTTGTTCGTTGTATTCACTGGTTTGAGGTGGCATTTTCTTCCCAGACGT
TGGTTTGTATATGAATAAATACCGCCTTCCCCTTcacacaagtgttacgc
gtaagccaaatcgcgtattacaaacaacctctaaattgccgagtacagga
gagaaaaaaatcgaaattcaaaatggtggCCAAGCCCACGCTCAATAAtt
ttgcagctcaataaatcaatgaaataatttgaaataaaaagtaaacaaac
cttgaacctttcatgaatccaaataaataaaagtattcatctaaagtgaa
gattacatttaaaaataaaacgatttccaaaccaatcTAAAGTCGGTGTC
TGGGGtgactggcaaggagttacgacttcagactttagattccaattctt
gtataggctgcaactacactacCAAATAATCTGTATTACAAATatttcca
aatgggtccataagttaagaaaatgaaattatcatctagcacgggggttt
tgtttttaaaaacaaacttcaaaataaaattgttaatgaacttatatatt
acttaaaatatcacttacttacataatttatttatgatataacacccctt
tcttaaataaatgggctcttaaagtcttttatgtttgcaaAAAGAAGGGA
GAaacatttaatttgacccccggttttttctctctttttctagctagTTC
CCGCGTGtcagtgtagacacaactttaatccggggaaataaagcgttttc
attggtctaaaatcacggatggtcacgtgaccagaatttttatccaggga
aatgccgtggcggCAATGATTTGCTTTAGTGAGTTTGaccattttattgt
tttgatttgagcgggcgaaatttctgtacaaaccacaatatggcttcgtt
ggaaacACTTGTGTTCaccatagttaaaatttggcacCAGTTGTTCGATT
ATACACCATGTATATATAATTTGGTATCTTTCGCGTCTTCTCTCGAGACT
GTACATATTGAGGTGTTTGAGGTTCTCCCAATAATTCAAATTGGGTGGAA
GTTGGATCCCTTTTATAAAGGATTTTTGCAGATACTCCAGTTCTTGCATT
AGGGATCGCTTTGTAGGAGACCATAGCTGGGAGCAGTATTCCAGATGTTG
AAGTACCAATGTCTTCCAAAGAGTGATCATTACTGATTTATCTCTGGACT
TGAAGGTTCTGTATATCTAGGCACTTATACCCTTGACCCTGTCAGTGATC
GTTTGAATGTGCATTTTATATGACAGGTTGTTTGAGAGTAGGATACCCAG
GTCTTTCACTgcactttttatttcgattggcTGCTGTACATCTGATTTGT
AGACTGAGTGTACTTTCAgttgttcattttttccgtatgcaatgtgttca
aacttttttccattgagCTCCATATTGTTGATAGATGTCCAGTCATAGAC
AATGTCTATAGATCATCTTGAAGCAGACTCACATCTGCAGCACAAGATAT
TGCCTTCATAAGTCTTGTGTCGTCAGTAAAAGATGAGAGGACGGAATGTT
TAATCTTTTCGTTTATGTCACTAATCATTACCAGAAACAAGAGGGGNNNN
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NNNNNNNNNGGTCCACCTTGTCAAAGGCCTTGCTGAAGTCAAGGTAGATt
acatcaacattttcattgttttgtagGTGAGATATCAGTCTTTCTACATG
AGCCAATAGTTGACTCGCCCTGGTCTGAAACCGTGTTGTGTTGGATTGTA
TAGGTTATTTTCTTCAAGGTGGGTTTGCAATTTCTCTCTgactattttct
caaatattttagtGGTAATTGATGTCAGGGCAACAGGTCGATAATTCTCT
GGTAAACCTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNcaaatgacaagatttttcgatcaatgtttt
ctttaaggtgaactctattgcttgatactttcctccaaaattctccagcg
actttttgtctacaaattggatctgaaattgtgtgtgcttatatataaag
aactttttattttctggctggagaaaatatctttttcaaaaaaaaattta
attgatgCAGattgatgacaaaattgaacgcaaaatcatttcgtggagct
aaattttattttattctcgtatattagaaggctagaaatcctcgatgctg
atagtaagaatatTCAGAGCAAatttgagttctactaaaaagtcgtattt
catcgggcgagcctagaatttcttttgatttattacataaNagaatgttc
agagcaaacttgagttctactaaaaagtcgtatttcttcgggcgagccta
gaatttcttttgatttattacataaaagaaatcaaaagaatttaacgacc
aattaccgacaaattcatctcctgtctttctttatacctctatgctgGAA
TAGTGTCAATTTGTTGGATGAAATCATCTTCTGTGAAAGTAATGTTCTCA
AGGGTCGAGGAGTCTTTTGTCTCATTTGAATTCAGAAAACTGTTTTGGAG
TGGTAAATACTGAACAGTAGTGCCTTTGTAAGATGTTTGCCATCTCTTGC
GAGTCAGATGTTAATTGGTtggtggttggatttttcagTGGGCCAACTTT
AGGTTTAGTTTTTGAGAATCTTTTTGNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTG
CTGTAGCATCAGTTCAATGTCAATTAGTTTctgatttgttttattggttt
tgaaattctttttggagAGTCTTTTACGTTTTCTCATAAGAATACGACCA
TCTCttggaatctttgaaaatttttttggaggtTTTCTCTTTGGCAAATG
CTTTTTCACAATCAGAAGACATTTTTCAAGGAAGTTGGGATATTGACGAT
TTGGGTCATATAGATTTGTGTCCAGCTCTTGAGACCAATTAATGTCTGTT
AATTCTTTGTTAATAATTTCCCAGTCAATTTTATCACTTTGGAAGTTGTA
GAGGTCAAATTTGCTTATTAAGTTACGTTCTTCAGTTTCTCCGAATTGAT
TATCGAAATTCAAATGTGTTGTAACATCTACAACAAGATGATCTGAATAG
ATAGTAGGTGAGCATGTGTAGTTAAATATAGTGTCTGTGTTGTTTGTGAa
taaaaagtctaaaatattaCCATCACTGTGTGTTGATTTGTGTATCATTT
GATTAATGTGCAAGTCtgctttaaaaacatttaaaacgtcCAGAAGCtgt
ttatttcaattttgtgtTGGGGTTGAAGTCTCGTCATTAAGAGGTGTGTG
TGGTATGTTAAAATCCCCAAGGATGTATGTGTCAGGTGTACAATCAGTAA
TACTATCAATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNCATCCTCGGGTGGAAGCTTTGGCACTTGGTACCTAGGTTG
CAGCCTCTTGGTTGTTTGTTGCcatatttgagcaattttgtacAGGCTTT
AGGATGGATAAATAAAACCTTATAGAATAATTAGATAGCTTAACCATCTG
ATCATCCCTTTACACTGGCTAAGATTATTGTATAAGAGTAGAGAAGTGGC
TTGATTTGCAGGCtgcaagcaaagcaaaattGTGAGACTATTTTTTGTGT
TGCCTTTTTTAGAAGATTTTAttggtgaaattctacttttattttaattt
tttctttgacCGACCCACCTtctttttttgggtagcttggcNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNTAGGTTGGTTGAGTCTTCAAATTAA
TCTTctctattttcattttatatttgcGTCTATCGATAGCTTTCTTTGGT
CTTCAATTTGTTCATCAATTTTGTCGCTTCGAAGTAGCTGGTTCATGCTG
TTTACGCTTAATTGATCTTTGATTTTAGTTGCTTCACAATTTTGCTCACA
GAcagttgcttgtttttttttctaaacttaaaattttcttacaaTTAAAT
ACAAAACCTCACACATCAACCTTGCTTTATAGAGAATGGAGATGTCAAAG
TCCGAACTGTTGCTCTTAAGAAAGTCATGTACCAAATTTTGAATGGTGAA
AAAATGCCTTCACTACTGATGACAATAATTCGGTTCATTCTACCCATGCA
AGACCACCAAATCAAAAAGTTATTACTCATCTTCTGGGAAATTGTCCCAA
AGACTGGAGCTGATGGTAAATTACTGCATGAAATGATTTTGGTGTGTGAT
GCCTATCGTCGTGATTTGGAACATCCCAATGAGTTCATTCGAGGATCAAC
ACTCAGATTCTTGTGCAAACTTAAAGTAA

Coding sequence (CDS) from alignment at scaffold_334:371387..381415+

>TCONS_00060108 ID=TCONS_00060108|Name=TCONS_00060108|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_334:371387..381415+ (Clytia hemisphaerica)
ATGAGTTCTATCAGTGAACTCCCTTGCTATACGCTCATCAACCATCCATC
TGAAAGTGAAAGCTCTTCAGAGAACCAACTGAAAGCTGATTTGGAGAATG
GAGATGTCAAAGTCCGAACTGTTGCTCTTAAGAAAGTCATGTACCAAATT
TTGAATGGTGAAAAAATGCCTTCACTACTGATGACAATAATTCGGTTCAT
TCTACCCATGCAAGACCACCAAATCAAAAAGTTATTACTCATCTTCTGGG
AAATTGTCCCAAAGACTGGAGCTGATGGTAAATTACTGCATGAAATGATT
TTGGTGTGTGATGCCTATCGTCGTGATTTGGAACATCCCAATGAGTTCAT
TCGAGGATCAACACTCAGATTCTTGTGCAAACTTAAAGTAATGAGTTCTA
TCAGTGAACTCCCTTGCTATACGCTCATCAACCATCCATCTGAAAGTGAA
AGCTCTTCAGAGAACCAACTGAAAGCTGATTTGGAGAATGGAGATGTCAA
AGTCCGAACTGTTGCTCTTAAGAAAGTCATGTACCAAATTTTGAATGGTG
AAAAAATGCCTTCACTACTGATGACAATAATTCGGTTCATTCTACCCATG
CAAGACCACCAAATCAAAAAGTTATTACTCATCTTCTGGGAAATTGTCCC
AAAGACTGGAGCTGATGGTAAATTACTGCATGAAATGATTTTGGTGTGTG
ATGCCTATCGTCGTGATTTGGAACATCCCAATGAGTTCATTCGAGGATCA
ACACTCAGATTCTTGTGCAAACTTAAAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037818XLOC_037818Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060108-proteinTCONS_00060108-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060108-exon-scaffold_334-1491911889:371387..371703TCONS_00060108-exon-scaffold_334-1491911889:371387..371703Clytia hemisphaericaexon
TCONS_00060108-exon-scaffold_334-1510915933:371387..371703TCONS_00060108-exon-scaffold_334-1510915933:371387..371703Clytia hemisphaericaexon
TCONS_00060108-exon-scaffold_334-1575043694:371387..371703TCONS_00060108-exon-scaffold_334-1575043694:371387..371703Clytia hemisphaericaexon
TCONS_00060108-exon-scaffold_334-1491911889:381119..381415TCONS_00060108-exon-scaffold_334-1491911889:381119..381415Clytia hemisphaericaexon
TCONS_00060108-exon-scaffold_334-1510915933:381119..381415TCONS_00060108-exon-scaffold_334-1510915933:381119..381415Clytia hemisphaericaexon
TCONS_00060108-exon-scaffold_334-1575043694:381119..381415TCONS_00060108-exon-scaffold_334-1575043694:381119..381415Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_334supercontigscaffold_334:371387..381415 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
75.1603	80.2124	58.7172	65.4997	102.303	81.4012	191.121	208.236	91.83	127.462	94.3411	88.3861	84.0686	80.8322	99.3344	110.444	95.6815	101.778	54.1028	71.2312	50.7329	47.7151	53.7352	62.7329	71.5732	77.5594	43.9625	39.2265	55.323	44.7753
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002553Clathrin/coatomer_adapt-like_N
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0030117membrane coat
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030117 membrane coat
molecular_function GO:0005488 binding
Blast
[Close]
BLAST of TCONS_00060108 vs. Swiss-Prot (Human)
Match: COPB (Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=1 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 7.599e-56
Identity = 96/127 (75.59%), Postives = 108/127 (85.04%), Query Frame = 2 
Query:  230 SISELPCYTLINHPXXXXXXXXNQLKADLENGDVKVRTVALKKVMYQILNGEKMPSLLMTIIRFILPMQDHQIKKLLLIFWEIVPKTGADGKLLHEMILVCDAYRRDLEHPNEFIRGSTLRFLCKLK 610
            + +E  CYTLIN P +SE  SE  LK DLE GDVK +T ALKKV+  ILNGEK+P LLMTIIRF+LP+QDH IKKLLL+FWEIVPKT  DG+LLHEMILVCDAYR+DL+HPNEFIRGSTLRFLCKLK
Sbjct:    2 TAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLK 128
The following BLAST results are available for this feature:
BLAST of TCONS_00060108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COPB7.599e-5675.59Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=... [more]
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