TCONS_00058425-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058425-protein
Unique NameTCONS_00058425-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length176

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058425-protein ID=TCONS_00058425-protein|Name=TCONS_00058425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MLLXFVSTVGIDFKVQTVFRNDKRIKLQIWDTAGQERYRTITTAYYRGAM
GFILMYDITNEESFKAVTDWASQVKTYSWDNTQVVLVGNKCDMEEERAVT
YEQGRKLGDQLGFPFFEASAKDNVNVRDAFDKLVDVICERMTDAIDGDLI
PGNGTKPGTTDLKSKPNQNGEGGCAC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036813XLOC_036813Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058425TCONS_00058425Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 115..137
score: 40.86
coord: 18..40
score: 53.33
coord: 80..93
score: 49.59
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 1..140
e-value: 9.4E-10
score: 5.9
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 1..140
e-value: 1.0E-63
score: 227.7
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 1..140
e-value: 1.8E-14
score: 64.1
NoneNo IPR availableGENE3D3.30.70.1390coord: 3..40
e-value: 1.6E-14
score: 53.2
NoneNo IPR availableGENE3D3.40.50.300coord: 41..138
e-value: 1.9E-37
score: 126.9
NoneNo IPR availablePROSITEPS51419RABcoord: 1..176
score: 27.44
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 7..133
e-value: 3.8E-20
score: 70.3
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 5..137
e-value: 3.9E-49
score: 166.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 5..143

Blast
[Close]
BLAST of TCONS_00058425-protein vs. Swiss-Prot (Human)
Match: RAB3A (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 2.384e-88
Identity = 120/174 (68.97%), Postives = 145/174 (83.33%), Query Frame = 0 
Query:    5 FVSTVGIDFKVQTVFRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFKAVTDWASQVKTYSWDNTQVVLVGNKCDMEEERAVTYEQGRKLGDQLGFPFFEASAKDNVNVRDAFDKLVDVICERMTDAID--GDLIPGNGTKPGTTDLKSKPNQNGEGGCAC 176
            FVSTVGIDFKV+T++RNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF AV DW++Q+KTYSWDN QV+LVGNKCDME+ER V+ E+GR+L D LGF FFEASAKDN+NV+  F++LVDVICE+M++++D     + G    P  +D +  P+Q+    CAC
Sbjct:   51 FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLSDQQVPPHQD----CAC 220
The following BLAST results are available for this feature:
BLAST of TCONS_00058425-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB3A2.384e-8868.97Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3... [more]
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