TCONS_00056959-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056959-protein
Unique NameTCONS_00056959-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length186

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056959-protein ID=TCONS_00056959-protein|Name=TCONS_00056959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
MMFYVLFSLFVATAFSADLDSQAKLLASKTVENKFIVENRELTIKYSIYN
VGTSAASQVNLADETFPIQDFEVVRGQLPAAWKSIAPNGNVTHIVVYKPL
KAGYFNFTSAQITYVPSEGAELQRAFTSFPGEGGIMTEVDFARKHSPHLL
EWTIFILMCLPSLVIPFSLWYKSHSKYTNAQKPKKQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035870XLOC_035870Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056959TCONS_00056959Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR008856TRAP_beta
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF05753TRAP_betacoord: 9..182
e-value: 3.3E-56
score: 189.4
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 30..127
e-value: 2.9E-5
score: 23.9
IPR008856Translocon-associated protein subunit betaPIRSFPIRSF016400TRAP-betacoord: 1..186
e-value: 9.1E-62
score: 205.7

Blast
[Close]
BLAST of TCONS_00056959-protein vs. Swiss-Prot (Human)
Match: SSRB (Translocon-associated protein subunit beta OS=Homo sapiens GN=SSR2 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 8.079e-60
Identity = 88/185 (47.57%), Postives = 122/185 (65.95%), Query Frame = 0 
Query:    1 MMFYVLFSLFVATAFSADLDSQAKLLASKTVENKFIVENRELTIKYSIYNVGTSAASQVNLADETFPIQDFEVVRGQLPAAWKSIAPNGNVTHIVVYKPLKAGYFNFTSAQITYVPSEGAELQRAFTSFPGEGGIMTEVDFARKHSPHLLEWTIFILMCLPSLVIPFSLWYKSHSKYTNAQKPKK 185
            ++ +V+ +LF  T      +  A+LLASK++ N++ VE R+LT++Y+IYNVG+SAA  V L+D++FP +DF +V G L   W  IAP  NV+H VV +PLKAGYFNFTSA ITY+  E   +    TS PG+GGI+ + +F R+ SPH L+W  F +M LPS+ IP  LWY S  KY   +  K 
Sbjct:    3 LLSFVVLALFAVT----QAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGPVVIGSTSAPGQGGILAQREFDRRFSPHFLDWAAFGVMTLPSIGIPLLLWYSSKRKYDTPKTKKN 183
The following BLAST results are available for this feature:
BLAST of TCONS_00056959-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SSRB8.079e-6047.57Translocon-associated protein subunit beta OS=Homo... [more]
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