TCONS_00056959 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056959
Unique NameTCONS_00056959
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1177

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056959 ID=TCONS_00056959|Name=TCONS_00056959|organism=Clytia hemisphaerica|type=transcript|length=1177bp
CCTCGCTTTCAAAAGCAATTTCccataaattatttttcaatacgaGGCCA
ATCAAGAAGGCTACCTTTTGAACGTGTatctttcaaaaagtcaaaacaaa
acgTAAACACAAGACGAAAGACTGGAAGACCGAGTGAGAAATCTTAGAAA
CTTTATAATCATGatgttttacgttttgttttcattatttGTGGCAACCG
CCTTCTCAGCTGATCTTGACTCACAAGCCAAATTACTAGCATCAAAGACA
GTAGAAAATAAATTCATCGTTGAAAATAGAGAACTCACAATCAAATACAG
TATCTACAATGTTGGAACTAGTGCTGCATCTCAAGTCAACTTAGCCGACG
AGACTTTCCCAATCCAAGACTTTGAAGTTGTCCGTGGACAATTACCAGCT
GCCTGGAAAAGCATTGCACCAAACGGAAACGTCACTCACATTGTCGTTTA
CAAACCATTGAAAGCTGGATATTTTAACTTTACCTCTGCTCAAATCACAT
ACGTCCCAAGTGAGGGAGCTGAACTCCAAAGGGCATTCACATCATTCCCA
GGTGAAGGAGGTATCATGACCGAAGTTGACTTCGCCAGAAAACATTCCCC
TCATCTTctcGAGTGGACCATCTTCATTTTGATGTGCTTACCATCTCTTG
TCATCCCATTCTCATTATGGTATAAGTCACACTCAAAATACACTAATGCA
CAAAAACCCAAAAAGCAATAGATGATGATGCGACAATACTTCAAAATCAT
CACAACCTTAGGCTTTATAAATTATTTAGGGACTTTTGAACTTTTTCTAT
CAATCAGGAAAGATCTTTAAGTTAAATTTTCTAATGCATTTTTCTTTGTC
TCTTTTGATTGCGTTTTTTTGTAGGATTTGAATCCTCGCCAGTCCAATTC
TTGTCAGTTCTCATCCTTTATACTCTATACTTCTTACTTGTTATGATGTT
CTAATAACTTCATTATGATATATTTTCAAGTCAATGTTATTATTTTAGAA
TAacacttttgttttaaaaactaGTAATTTTTTATATGATACGTCGAAAG
ATAAATAAAATGgtgttcaaaaaatcaaataccTCACTGTTGTCGTTTTC
tttggatgaaattttgactttcTTCTTTGTTCaaagaaaagtagaaattt
CCTAGTTTTCTAGATTTTATAAATGCC
Run BLAST on NCBI

protein sequence of TCONS_00056959-protein

>TCONS_00056959-protein ID=TCONS_00056959-protein|Name=TCONS_00056959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
MMFYVLFSLFVATAFSADLDSQAKLLASKTVENKFIVENRELTIKYSIYN
VGTSAASQVNLADETFPIQDFEVVRGQLPAAWKSIAPNGNVTHIVVYKPL
KAGYFNFTSAQITYVPSEGAELQRAFTSFPGEGGIMTEVDFARKHSPHLL
EWTIFILMCLPSLVIPFSLWYKSHSKYTNAQKPKKQ
Run BLAST on NCBI

transcript from alignment at scaffold_284:911538..919548-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056959 ID=TCONS_00056959|Name=TCONS_00056959|organism=Clytia hemisphaerica|type=transcript|length=8011bp|location=Sequence derived from alignment at scaffold_284:911538..919548- (Clytia hemisphaerica)
CCTCGCTTTCAAAAGCAATTTCCCATAAATTATTTTTCAATACGAGGCCA
ATCAAGAAGGCTACCTTTTGAACGTGTATCTTTCAAAAAGTCAAAACAAA
ACGTAAACACAAGACGAAAGACTGGAAGACCGAGTGAGAAATCTTAGAAA
CTTTATAATCATGGTAAGTTGTTAGATTTTTAATTCTGGGTCACCTAGAT
TCAGTAAGTCAGGAGAAGCAATGATGCTGTGTTATAAGTGGTTGTTGACC
ATTGTTGCTGCACAGCCGTTAATCGGTCGATAGCGTTCGATCGTCGATTC
CGTTCGATTGAGATCGTCTGGGAATATGTCATATTCTATCATATTATATT
CGAAAGCATCACTGGCCGAATTATTGAAAAAATTAAAAAACATGAGGTTT
CGTGAGGTTTCACTTCCATGAGTCGGCTGATTTTTTAAAAATACGCGCGT
TAGTTTTCAGATGATGAATGATTAGCACAGCGAGCGCTATCGTAATTATA
TCGCGGATATCTTCTCTGGAACATTCCGGTGGAGACCAATCGCCGAAAAT
CTACCTCTGGAACACCGGAAGTGCTCCCGAATCTCCCGAATGTTCCAGAG
CATGTTTCCGGAGCGCCGGGAGGGTCCTAAATTCCGCAGCTTTACTGCTG
CATAATTTTGCAGGTCTGGCCTTTGGACCAAAATCGGCATCGCATGGCCT
GGACCGGTGTCCCAAAATAATGTGCATTTAGAAGAACAACCCATAAGAAA
ACTTTTCACCCTAGCATTTTAATTTCCTACCTAGCGATTTATTCACAATC
ATTCTTGGAAGAAATGCTACTTCGTTAAAAAAAACGCTACTTTGTTCAAG
AAAGCAAGTATTTGCCTGATTTTGCATTAGGCGGATCTCTAAAAATTGTT
TGGTTCCCGTCATCCGACCGACCCTGATTTTTACTCTGAAGTTAGAGTCG
GAGAGTCGGAGACCCCTTTTGCCATTTCTGGATTCCTAATTGTCAACCTC
TGGGTGCTCAGTGTTTACAAGTTTTCAAATCGAAATAGCAAGCGCGGCGC
GCCAGCGGAAAGTGAACCAAAAACCATTTTATCCATGATTTCTCGATTTT
TTAACCCGATTTCATAATTCGGACCTTCGTGGAAGCAGACCGCGCTCGCG
AAGCATCACTTTCTAAAAAACAAGATGTTGCATGATGATTATGGGGCTCA
CAATCAATGAACAAAGATGGTATGTATGTACAAAAAAATATTTTCGACCG
ACCAACCAACCCACTTTGTAAAGTCGAAATGACGGGAACCAAGCAATTTC
TAGAGATCCGCCTTATTTTAGAAGAAAATTGGTAGGCGTTCATAATTTTT
AAAATCACAAGCTTCAATTGGAAGCGTTGTGTAAAATAGCAGCGCAACCC
TGGGGAAACGCTGCGAAAAACTGCAACGTTGCGGAATATTGCAACGTTGC
GGATCTATGCAATTTGCAGAACTGAAAAGGACTAGGAACGACTACAAAGT
TAAGTGTGTTTGTGTTTCTGAATAGCGCGCCTTTTCAGTTTTTGACTTTC
TGGCGCACAACAAGATTCTTGTTGTAGAATTTTCCGTGGAAGGACTATTT
TCCTCAGATGTATAATTTTCAAGCGCCTTCAGAGGTGGACTTTTTGGTTT
GCCATCACCCGACCAACCCTACCTCGAAACCTGCCGACCCAAAAAATTAT
ATTGCCATTTCAAAGAAGATTTTTTTCCTTCAAAAACTTCAAATAATAAA
AAATCAAAACTCGCATCTTGTTTGTCTCAAGTATAAGAATCCTAAATTCC
CTGCTAGCACTTCTGTTTTTTATTCAAAATTACCTAAATATAAACAAACT
GTTAACCCTTCCATGAACGAAAATTTCATACCCACCTCCAAAAATCTAGG
TTCGGTGACCGCAAACCAACAATTTTTTAAGCCCAGCCTCAGGCTACCTA
CAACTCAATTTTGATCGGCCTCAAGCCAAACTTCCAGAGTTTTCCAGAGC
AGCTAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCATTTGGGTAACCTCAATT
TAACCACATCATATTTCTAAGTATTACTCAGGATTGAAGTAACCTCTTAA
ATTCGCGTTTCTTCTAAATCCACGAGAAATTTCTACTTGAGTTCTTCAAA
GTTTTGATATGATAACCTCAAAATTCCACCAGATATGGTATCAGATATGA
CAGAAGGTAGGAATGTCACAAAACCCCCTTTTATTTCTGACTGTGTTCAT
TGTACAACAGTGATATGTCAAGCTCAAATCCTAGCTTTTAGAATCAAATT
TCAACAAAAAATAACATATGATAAGATTCTCTCTTGCAAATGAATCTTCA
ATTTTCAGGAAATCATAGTTACAAAGACCTTTCAAGACAACTGATTTCAG
TTTACAAGTTTTTGTTCAATTACAGCAAAGTATCAAAAGCCAAATAATAA
TGCAGTTTAATGTTTTTTGCTAAATTTGACAATAAAGTTATGTCCGCAAC
TAGCAAGGTTACATTTTCTAATTTTCTGTTGACTAACTGAAATATAGCAA
ACTTTTGTTTTTTTTTGAAAGTTTATGATGAGTCTTTCAACTCTAGAATG
AAATTACTTGATCATAGCCAGTTTTCTTTTCATAAAGTCAAACTTTATAG
GAATGATTTTTAGCATTTTAGATTTTTTTTTTGAAAAAGCGTCTGGGTTT
TAAAAATAATGCAATACTGGACAGCAAAATTTGATTTTCAATGCAGCCTA
ATATATTAGCCATGGGCTGAAATCTAAGACAAGTATTAGATTATGCATAT
TTGTGACCTTCCAAGCGATTTGAAGTACCTGAAAATCAGACTGGTCTCGG
TCCGCTATTGCAAGCAGTCTAGTAGCGGACAAATTTTTGTTTTAGACCGG
CCTTCAGACCATCGAGAAATGTGATCTCTAACAGTCCTGGCTGCTTCTAG
TGGCCACTTGTTAGACTGGTCCTGAGCGCTCATTAGACCGGTCTGGGCTG
TTGTAAAATGATATCGACCAGGCGATGGCGATCAGGGCCGGTCTGGGACT
CTTAGCAGCCTTTTGGTTATTTATCGACCCTTAAAAGCCCATCTAAAGAC
CGGTCCTATTTTCAGGTACTTTAGGCGTACAAACTTTCGCGAGCAGAAAC
TTTCGCGAGGACGAAAAATCGCAAAATTCACGACATTTACTTTCGCGTAT
TTAACGGAAAAATATATTTCGCGAGCATAAACTTTCGCGAATCAAGACGT
AGAATTGAGAATTTTCACATGAAAAAATGGCTTAGAGGGACAAATACTTC
TTGGATTGGCTTGAAACATTTGTCCTTTGACTTATTAGTCTTATAGCAGG
CTAAAAAGTTCCATAAAATTTACATTTTATTTAAAGTTTGAAGATTTACA
AATTATCTATTTTGTCAAGAATTTTTCGCGAGCATAAACTTTCGCGAATG
GCCCTTCCTAGAATTTTTAAATACATTTACTTTCGCGAAAAGGGCCAAAA
TGCGCGAAAATCGCGAAAGTTTCTGCTCGCGAAAGTTTGTACGCCTAAAG
TACTTTAAATCGCTTGGGGAGTCACATTTTATTTCAAATGGCATCTAAAC
TACAAAGAACTTTTTGCCAGATTTGTCTGATTATAACTACTCTAGGTCAA
ATTTCTGGACTAAGCCAGTTTGATTAAGCTCTGATATTTGTATTTTCTAA
AAATTGAAGTCTTGAATAAAAAAATCATCCAGGAATGAAATTCAACTTCA
AAACTTTGTTTTTCCAAAGATTTTCACATAGGGTGACAATACCAGACTGG
CCCTATTGTTAACAAAATTTAATCTCAACACTAAAGAATTGCTAGAGTTT
GAGTAGCTTGATATTTCAATCAACATTTCTTTTTGGTTAAAATCAATTAC
ATAATTTCATAGTGATTTGAAAAAAACAGGGATTTTTCAAGCCAAAAAAC
TCAATCTAACTCAATCCAAAGTATAAAAGATATTTTCTAGCAAAATTAAA
CTTCTTTGTTGTTTACAAACAAAAATCTCTAATATTATCTACATATTCAA
AACGGAAAAATGAATTTTCTGCTTTCTACATATTCAAAATATGTTTTATA
ATTATGTTCAGTTTTGCCCTCTGAACACCAACCAAACTCCCAGCTTCATC
AATATACAGCTTTGCTGAGAAAATTCCCTTTCAGGCATATTAGAAACTCG
ATCTAAGTTTATTAAAACAGCCTCAGCTCAAAGTGCTTTATAGAAAAATC
CCTGCGAAAAGTTAAAATTGTATCAAATAATGGGTCTGAATTTAATTATA
TTTCATTATTATTTTCTTTTTAGATGTTTTACGTTTTGTTTTCATTATTT
GTGGCAACCGCCTTCTCAGCTGATCTTGACTCACAAGCCAAATTACTAGC
ATCAAAGACAGTAGAAAATAAATTCATCGTTGAAAATAGAGAACTCACAA
TCAAATACAGTATCTACAATGTTGGAACTAGGTAAATAAAACATTCATTT
TACCATCACTTATTCATTGATGATTTGATCAGGGATATTTGGCCTGATTT
GGCAGAGTCATCTAGAAAGTGACTATGGCTAAAAAGATCTATTTACATTG
TCTTTATACAAAAAATGGACTTTCTTTTTTATCTCAGGAGATTTCCTTTG
TCTACTGTGCTATAGACTGGTGAATGACAAATTAACTCAAGGGAACTATA
GATTTTTGGCAAGCAAATGCTTAGCAAATCCATTGTTTCGATAACCATGT
CCTTGGGCCAGTGTTTCAATTGTTTAGTTACCAAGCCCGTGTCATTTTAA
AATTCACTCTATTAATCGGTATTGTAAATTCATTAAATTGATGAAAAAGC
TGTTTTAAAGGATGGTTGTTTTATTAAAATACTCATGCTCATCACATTAT
TGATATTTTGTTTTTCGTGTACAGTGCTGCATCTCAAGTCAACTTAGCCG
ACGAGACTTTCCCAATCCAAGACTTTGAAGTTGTCCGTGGACAATTACCA
GCTGCCTGGAAAAGCATTGCACCAAACGGAAACGTCACTCACATTGTCGT
TTACAAACCATTGAAAGCTGGATATTTTAACTTTACCTCTGCTCAAATCA
CATACGTCCCAAGTGAGGGAGCTGAACTCCAAGTAAGAATAAAAAATTTG
AATATTATTCACAGTTACTTCTACATTTATAAGTCGACTAATTTTATTGG
AACTTGAATTTATGTGGCTACAGGCCACAGTTTAGAGTCAAATTTTGCAA
AATTGTCCTGCGTGAATGCTATGTTCTCTAGGTATTTCAAAAACAATTAA
AATCCTGTTTCTGTATTTTCAAATATTGCCAGGGTCTCTATTTTCTGTTC
ATTTTGTTGCAGTATGATTAAATTCTTCTGATTTTCCCTTTCTTTCAGAG
GGCATTCACATCATTCCCAGGTGAAGGAGGTATCATGACCGAAGTTGACT
TCGCCAGAAAACATTCCCCTCATCTTGTAAGTAAATGATGCACTTATTAT
AAAATTGTATTGGCTAACTTTTCCTTTTTTGGATATTGGTCACAGTTGCA
ACATTTCTCAAATTATTATTATTGTTATTGGAAAACTTATTCATCTTCAA
TTACTAAATGGAACTTATTTTCAATCTCTTTTCTTTTTCAGCTCGAGTGG
ACCATCTTCATTTTGATGTGCTTACCATCTCTTGTCATCCCATTCTCATT
ATGGTATAAGTCACACTCAAAATACACTAATGCACAAAAACCCAAAAAGC
AATAGATGATGATGCGACAATACTTCAAAATCATCACAACCTTAGGCTTT
ATAAATTATTTAGGGACTTTTGAACTTTTTCTATCAATCAGGAAAGATCT
TTAAGTTAAATTTTCTAATGCATTTTTCTTTGTCTCTTTTGATTGCGTTT
TTTTGTAGGATTTGAATCCTCGCCAGTCCAATTCTTGTCAGTTCTCATCC
TTTATACTCTATACTTCTTACTTGTTATGATGTTCTAATAACTTCATTAT
GATATATTTTCAAGTCAATGTTATTATTTTAGAATAACACTTTTGTTTTA
AAAACTAGTAATTTTTTATATGATACGTCGAAAGATAAATAAAATGGTGT
TCAAAAAATCAAATACCTCACTGTTGTCGTTTTCTTTGGATGAAATTTTG
ACTTTCTTCTTTGTTCAAAGAAAAGTAGAAATTTCCTAGTTTTCTAGATT
TTATAAATGCC

Coding sequence (CDS) from alignment at scaffold_284:911538..919548-

>TCONS_00056959 ID=TCONS_00056959|Name=TCONS_00056959|organism=Clytia hemisphaerica|type=CDS|length=2805bp|location=Sequence derived from alignment at scaffold_284:911538..919548- (Clytia hemisphaerica)
CTCGAGTGGACCATCTTCATTTTGATGTGCTTACCATCTCTTGTCATCCC
ATTCTCATTATGGTATAAGTCACACTCAAAATACACTAATGCACAAAAAC
CCAAAAAGCAATAGAGGGCATTCACATCATTCCCAGGTGAAGGAGGTATC
ATGACCGAAGTTGACTTCGCCAGAAAACATTCCCCTCATCTTTGCTGCAT
CTCAAGTCAACTTAGCCGACGAGACTTTCCCAATCCAAGACTTTGAAGTT
GTCCGTGGACAATTACCAGCTGCCTGGAAAAGCATTGCACCAAACGGAAA
CGTCACTCACATTGTCGTTTACAAACCATTGAAAGCTGGATATTTTAACT
TTACCTCTGCTCAAATCACATACGTCCCAAGTGAGGGAGCTGAACTCCAA
ATGTTTTACGTTTTGTTTTCATTATTTGTGGCAACCGCCTTCTCAGCTGA
TCTTGACTCACAAGCCAAATTACTAGCATCAAAGACAGTAGAAAATAAAT
TCATCGTTGAAAATAGAGAACTCACAATCAAATACAGTATCTACAATGTT
GGAACTAGATGCTCGAGTGGACCATCTTCATTTTGATGTGCTTACCATCT
CTTGTCATCCCATTCTCATTATGGTATAAGTCACACTCAAAATACACTAA
TGCACAAAAACCCAAAAAGCAATAGAGGGCATTCACATCATTCCCAGGTG
AAGGAGGTATCATGACCGAAGTTGACTTCGCCAGAAAACATTCCCCTCAT
CTTTGCTGCATCTCAAGTCAACTTAGCCGACGAGACTTTCCCAATCCAAG
ACTTTGAAGTTGTCCGTGGACAATTACCAGCTGCCTGGAAAAGCATTGCA
CCAAACGGAAACGTCACTCACATTGTCGTTTACAAACCATTGAAAGCTGG
ATATTTTAACTTTACCTCTGCTCAAATCACATACGTCCCAAGTGAGGGAG
CTGAACTCCAAATGTTTTACGTTTTGTTTTCATTATTTGTGGCAACCGCC
TTCTCAGCTGATCTTGACTCACAAGCCAAATTACTAGCATCAAAGACAGT
AGAAAATAAATTCATCGTTGAAAATAGAGAACTCACAATCAAATACAGTA
TCTACAATGTTGGAACTAGATGCTCGAGTGGACCATCTTCATTTTGATGT
GCTTACCATCTCTTGTCATCCCATTCTCATTATGGTATAAGTCACACTCA
AAATACACTAATGCACAAAAACCCAAAAAGCAATAGAGGGCATTCACATC
ATTCCCAGGTGAAGGAGGTATCATGACCGAAGTTGACTTCGCCAGAAAAC
ATTCCCCTCATCTTTGCTGCATCTCAAGTCAACTTAGCCGACGAGACTTT
CCCAATCCAAGACTTTGAAGTTGTCCGTGGACAATTACCAGCTGCCTGGA
AAAGCATTGCACCAAACGGAAACGTCACTCACATTGTCGTTTACAAACCA
TTGAAAGCTGGATATTTTAACTTTACCTCTGCTCAAATCACATACGTCCC
AAGTGAGGGAGCTGAACTCCAAATGTTTTACGTTTTGTTTTCATTATTTG
TGGCAACCGCCTTCTCAGCTGATCTTGACTCACAAGCCAAATTACTAGCA
TCAAAGACAGTAGAAAATAAATTCATCGTTGAAAATAGAGAACTCACAAT
CAAATACAGTATCTACAATGTTGGAACTAGATGCTCGAGTGGACCATCTT
CATTTTGATGTGCTTACCATCTCTTGTCATCCCATTCTCATTATGGTATA
AGTCACACTCAAAATACACTAATGCACAAAAACCCAAAAAGCAATAGAGG
GCATTCACATCATTCCCAGGTGAAGGAGGTATCATGACCGAAGTTGACTT
CGCCAGAAAACATTCCCCTCATCTTTGCTGCATCTCAAGTCAACTTAGCC
GACGAGACTTTCCCAATCCAAGACTTTGAAGTTGTCCGTGGACAATTACC
AGCTGCCTGGAAAAGCATTGCACCAAACGGAAACGTCACTCACATTGTCG
TTTACAAACCATTGAAAGCTGGATATTTTAACTTTACCTCTGCTCAAATC
ACATACGTCCCAAGTGAGGGAGCTGAACTCCAAATGTTTTACGTTTTGTT
TTCATTATTTGTGGCAACCGCCTTCTCAGCTGATCTTGACTCACAAGCCA
AATTACTAGCATCAAAGACAGTAGAAAATAAATTCATCGTTGAAAATAGA
GAACTCACAATCAAATACAGTATCTACAATGTTGGAACTAGATGCTCGAG
TGGACCATCTTCATTTTGATGTGCTTACCATCTCTTGTCATCCCATTCTC
ATTATGGTATAAGTCACACTCAAAATACACTAATGCACAAAAACCCAAAA
AGCAATAGAGGGCATTCACATCATTCCCAGGTGAAGGAGGTATCATGACC
GAAGTTGACTTCGCCAGAAAACATTCCCCTCATCTTTGCTGCATCTCAAG
TCAACTTAGCCGACGAGACTTTCCCAATCCAAGACTTTGAAGTTGTCCGT
GGACAATTACCAGCTGCCTGGAAAAGCATTGCACCAAACGGAAACGTCAC
TCACATTGTCGTTTACAAACCATTGAAAGCTGGATATTTTAACTTTACCT
CTGCTCAAATCACATACGTCCCAAGTGAGGGAGCTGAACTCCAAATGTTT
TACGTTTTGTTTTCATTATTTGTGGCAACCGCCTTCTCAGCTGATCTTGA
CTCACAAGCCAAATTACTAGCATCAAAGACAGTAGAAAATAAATTCATCG
TTGAAAATAGAGAACTCACAATCAAATACAGTATCTACAATGTTGGAACT
AGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035870XLOC_035870Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056959-exon-scaffold_284-1575043694:919386..919548TCONS_00056959-exon-scaffold_284-1575043694:919386..919548Clytia hemisphaericaexon
TCONS_00056959-exon-scaffold_284-1575043694:913268..913425TCONS_00056959-exon-scaffold_284-1575043694:913268..913425Clytia hemisphaericaexon
TCONS_00056959-exon-scaffold_284-1575043694:912617..912824TCONS_00056959-exon-scaffold_284-1575043694:912617..912824Clytia hemisphaericaexon
TCONS_00056959-exon-scaffold_284-1575043694:912273..912350TCONS_00056959-exon-scaffold_284-1575043694:912273..912350Clytia hemisphaericaexon
TCONS_00056959-exon-scaffold_284-1575043694:911538..912107TCONS_00056959-exon-scaffold_284-1575043694:911538..912107Clytia hemisphaericaexon
TCONS_00056959-exon-scaffold_284-1510915933:919386..919548TCONS_00056959-exon-scaffold_284-1510915933:919386..919548Clytia hemisphaericaexon
TCONS_00056959-exon-scaffold_284-1510915933:913268..913425TCONS_00056959-exon-scaffold_284-1510915933:913268..913425Clytia hemisphaericaexon
TCONS_00056959-exon-scaffold_284-1510915933:912617..912824TCONS_00056959-exon-scaffold_284-1510915933:912617..912824Clytia hemisphaericaexon
TCONS_00056959-exon-scaffold_284-1510915933:912273..912350TCONS_00056959-exon-scaffold_284-1510915933:912273..912350Clytia hemisphaericaexon
TCONS_00056959-exon-scaffold_284-1510915933:911538..912107TCONS_00056959-exon-scaffold_284-1510915933:911538..912107Clytia hemisphaericaexon
TCONS_00056959-exon-scaffold_284-1491911889:919386..919548TCONS_00056959-exon-scaffold_284-1491911889:919386..919548Clytia hemisphaericaexon
TCONS_00056959-exon-scaffold_284-1491911889:913268..913425TCONS_00056959-exon-scaffold_284-1491911889:913268..913425Clytia hemisphaericaexon
TCONS_00056959-exon-scaffold_284-1491911889:912617..912824TCONS_00056959-exon-scaffold_284-1491911889:912617..912824Clytia hemisphaericaexon
TCONS_00056959-exon-scaffold_284-1491911889:912273..912350TCONS_00056959-exon-scaffold_284-1491911889:912273..912350Clytia hemisphaericaexon
TCONS_00056959-exon-scaffold_284-1491911889:911538..912107TCONS_00056959-exon-scaffold_284-1491911889:911538..912107Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056959-proteinTCONS_00056959-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:911538..919548 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
308.744	333.919	294.55	289.552	382.354	306.906	746.523	761.748	407.122	482.366	276.484	376.339	208.749	209.725	243.056	272.718	257.031	232.371	76.9467	115.295	140.539	141.922	186.287	188.923	184.198	191.75	128.251	97.6133	269.744	185.387
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR008856TRAP_beta
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0016021 integral component of membrane
Blast
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BLAST of TCONS_00056959 vs. Swiss-Prot (Human)
Match: SSRB (Translocon-associated protein subunit beta OS=Homo sapiens GN=SSR2 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.937e-55
Identity = 87/177 (49.15%), Postives = 120/177 (67.80%), Query Frame = 2 
Query:  161 MMFYVLFSLFVATAFSADLDSQAKLLASKTVENKFIVENRELTIKYSIYNVGTSAASQVNLADETFPIQDFEVVRGQLPAAWKSIAPNGNVTHIVVYKPLKAGYFNFTSAQITYVPSEGAELQRAFTSFPGEGGIMTEVDFARKHSPHLLEWTIFILMCLPSLVIPFSLWYKSHSKY 691
            ++ +V+ +LF  T      +  A+LLASK++ N++ VE R+LT++Y+IYNVG+SAA  V L+D++FP +DF +V G L   W  IAP  NV+H VV +PLKAGYFNFTSA ITY+  E   +    TS PG+GGI+ + +F R+ SPH L+W  F +M LPS+ IP  LWY S  KY
Sbjct:    3 LLSFVVLALFAVT----QAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGPVVIGSTSAPGQGGILAQREFDRRFSPHFLDWAAFGVMTLPSIGIPLLLWYSSKRKY 175
The following BLAST results are available for this feature:
BLAST of TCONS_00056959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SSRB1.937e-5549.15Translocon-associated protein subunit beta OS=Homo... [more]
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