TCONS_00056724-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056724-protein
Unique NameTCONS_00056724-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length513

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056724-protein ID=TCONS_00056724-protein|Name=TCONS_00056724-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp
MITLSWKEFTILVLLSLGHFRTIFADTTCSMKTKCQIAETSSGDKVNVDC
SNKNINDSCLYRILSTYSNISQIEDLNLSKNRLSRFIINNNPIRTVLQSL
LYLNLSKNSFTTTPSWLTEQTPQLLELDLSYNKLHNISSRDFLNTTGFRT
GIPSLMILHLNHNRISTLHDQPFIQGFQNLQRLFLNNNLFDFSDSWQLEG
LSKLIILDLSYNHIARLDTQTLTFSKQLSFLYLHHNQIQDLWSLTFVEFR
QMSYLSLSHNNITRIHNYAISKSLIETLDLSHNRINIIPFESFMDTDIYK
LYLGHNPLKCDCKLRKVLDITVNQYVEGTCTTDNLFNKLNNITDTLLEIK
CDACQIIDCQIHEKCIIVQSDVFPKKPTPKCVCRYGKLPDGGCDPLPRCN
LECQNNASCIVSTAATSKCVCTANFTGKLCESHFNGSLTTSSTTARNTQR
PGVTPLRKHSPLSTGVIVVVSLVSVVIGLIFGVYLYRRITLGVKVPHKQY
KPFFIRGDDLLKG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035741XLOC_035741Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056724TCONS_00056724Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675L_dom-like
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000742EGF-like domainSMARTSM00181egf_5coord: 353..394
e-value: 36.0
score: 9.6
coord: 398..431
e-value: 0.13
score: 21.4
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 395..431
score: 14.933
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 226..248
e-value: 84.0
score: 5.7
coord: 201..224
e-value: 3.8
score: 16.5
coord: 152..175
e-value: 11.0
score: 12.9
coord: 97..120
e-value: 40.0
score: 8.3
coord: 177..200
e-value: 240.0
score: 2.0
coord: 273..295
e-value: 93.0
score: 5.3
coord: 121..144
e-value: 29.0
score: 9.5
coord: 249..272
e-value: 13.0
score: 12.4
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 227..285
e-value: 3.3E-8
score: 33.1
coord: 153..214
e-value: 7.3E-9
score: 35.2
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 123..144
score: 8.074
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 251..272
score: 7.119
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 154..175
score: 7.019
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 179..199
score: 5.748
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 99..120
score: 5.594
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 274..295
score: 7.088
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 227..248
score: 7.804
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 203..223
score: 6.518
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 72..94
score: 4.947
NoneNo IPR availableGENE3D2.10.25.10coord: 401..436
e-value: 2.1E-5
score: 23.9
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 48..316
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 398..437
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 24..142
e-value: 2.8E-8
score: 32.6
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 143..205
e-value: 6.0E-8
score: 31.8
coord: 206..253
e-value: 3.9E-10
score: 38.9
coord: 254..344
e-value: 2.0E-7
score: 30.1
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 419..430

Blast
[Close]
BLAST of TCONS_00056724-protein vs. Swiss-Prot (Human)
Match: ALS (Insulin-like growth factor-binding protein complex acid labile subunit OS=Homo sapiens GN=IGFALS PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.520e-16
Identity = 78/270 (28.89%), Postives = 120/270 (44.44%), Query Frame = 0 
Query:   64 LSTYSNISQIEDLNLSKNRLSRFIINNNPIRTVLQSLLYLNLSKNSFTTTPSWLTEQTPQLLELDLSYNKLHNISSRDFLNTTGFRTGIPSLMILHLNHNRISTLHDQPFIQGFQNLQRLFLNNNLFDFSDSWQLEGLSKLIILDLSYNHIARLDTQTLTFSKQLSFLYLHHNQIQDLWSLTFVEFRQMSYLSLSHNNITRIHNYAISK-SLIETLDLSHNRINIIPFESFMD-TDIYKLYLGHNPLK-CDCKLRKVLDITVNQYVEGTC 330
            L T+++   +  L LS NRLSR     + +   L SL  LNL  NS    P         L EL L+ N+L  +    F       +G+  L  L L+ N +  +    F+Q    LQ+L+L+ NL          GL  L  LDLS+N +A L   T      L  L L HN I  L   TF +   +  L L HN I ++   +      +E L L HN++  +   +F+  T++  + L  N L+    ++ + L    + ++EG+C
Sbjct:  139 LGTFAHTPALASLGLSNNRLSRL---EDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALF-------SGLAELRELDLSRNALRAIKANVFVQ-LPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSC 397
The following BLAST results are available for this feature:
BLAST of TCONS_00056724-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ALS8.520e-1628.89Insulin-like growth factor-binding protein complex... [more]
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