TCONS_00055577-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055577-protein
Unique NameTCONS_00055577-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length155

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055577-protein ID=TCONS_00055577-protein|Name=TCONS_00055577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MDLKLKEARSNTTKMAEKNASETKMDWDKKYDVALEQAVFRWIAGVLEDA
TLFDGVSGPNQFKDKLKNGEILCNLMNKLQAGIIKKFKKNAKMPFQQMEN
IGFVNEAMRNYGVQAEYIFVTVDLFEGQNIPQVLLSLRNLGDVATGKGIK
PAFSL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034950XLOC_034950Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055577TCONS_00055577Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003096SM22_calponin
IPR001715CH-domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003096Smooth muscle protein/calponinPRINTSPR00888SM22CALPONINcoord: 96..112
score: 42.91
coord: 112..127
score: 50.74
coord: 62..77
score: 56.25
coord: 31..44
score: 39.92
coord: 133..147
score: 36.47
IPR001715Calponin homology domainSMARTSM00033ch_5coord: 35..140
e-value: 6.3E-14
score: 62.3
IPR001715Calponin homology domainGENE3D1.10.418.10coord: 23..154
e-value: 4.9E-24
score: 84.2
IPR001715Calponin homology domainPFAMPF00307CHcoord: 36..143
e-value: 6.2E-17
score: 61.7
IPR001715Calponin homology domainPROSITEPS50021CHcoord: 33..144
score: 14.097
IPR001715Calponin homology domainCDDcd00014CHcoord: 36..141
e-value: 8.74012E-14
score: 62.3283
IPR001715Calponin homology domainSUPERFAMILY47576Calponin-homology domain, CH-domaincoord: 27..150
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Blast
[Close]
BLAST of TCONS_00055577-protein vs. Swiss-Prot (Human)
Match: CNN1 (Calponin-1 OS=Homo sapiens GN=CNN1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.844e-18
Identity = 52/131 (39.69%), Postives = 69/131 (52.67%), Query Frame = 0 
Query:   20 ASETKMDWDKKYDVALEQAVFRWIAGVLEDATLFDGVSGPNQFKDKLKNGEILCNLMNKLQAGIIKKFKKNAKMPFQQMENIGFVNEAMRNYGVQAEYIFVTVDLFEGQNIPQVLLSLRNLGDVATGKGIK 150
            ++E K    +KYD   EQ +  WI GV        G    N F D LK+G ILC  +NKLQ G +KK  ++ +  + Q+ENIG   +A+  YGV+   IF   DLFE  N  QV  +L  L  +A  KG K
Sbjct:   15 SAEVKNKLAQKYDHQREQELREWIEGVT-------GRRIGNNFMDGLKDGIILCEFINKLQPGSVKKINESTQN-WHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTLLALASMAKTKGNK 137
The following BLAST results are available for this feature:
BLAST of TCONS_00055577-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNN19.844e-1839.69Calponin-1 OS=Homo sapiens GN=CNN1 PE=1 SV=2[more]
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