|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055577 ID=TCONS_00055577|Name=TCONS_00055577|organism=Clytia hemisphaerica|type=transcript|length=2159bp
ttattcattCAGTCAATTTATATTGTACGTTCGCACATTTTTTCAGTTGG
TTCATTGTATGTAATGTAAGTCAAAAGTAGGCGTTGGTTTACTCCTCTTA
TGGATCTCAAATTGAAGGAAGCAAGAAGCAATACaacaaaaatggctgaa
aagaATGCATCAGAAACCAAAATGGATTGGGATAAAAAATACGATGTTGC
ACTAGAACAAGCCGTCTTCAGATGGATCGCTGGTGTGTTAGAAGATGCAA
CCTTATTCGACGGAGTATCTGGTCCAAACCAATTCAAAGATAAACTAAAG
AATGGAGAAATACTTTGTAATTTAATGAACAAGCTACAAGCTggaatcat
caaaaaattcaaaaagaatgCTAAAATGCCTTTTCAGCAGATGGAGAACA
TAGGTTTCGTGAATGAAGCTATGAGAAACTATGGTGTACAAGCAGAATAC
ATCTTTGTAACAGTTGATTTATTCGAGGGACAAAATATACCACAAGTTCT
TCTCTCGCTACGCAATTTGGGAGATGTTGCTACAGGCAAGGGAATCAAGC
CTGCTTTCTCGCTGTAGTGTTTTATATATCATCGAATTAtcatattgtat
ttttttagtttttgtaaCTTTGTATTGCATATTTTTTTATAGTGCCCATG
TGGCATAACTTTTTagatttagaaatattttttttcaaatacccACTTGT
CACGTACATACGCTTTTTAACGAACTTTGTaacacaaaatatttaaaaga
agaaaaaaactgaaagCAAAATGCCAGAAAATGCGTATATGATATGGAAT
TATCAAAGATTTGAAGTGCTTTAACAAGATTACAAGCAGCATTAAGATGT
TTGACTTATGTGCCTAAGGAGACGTATTAAATTGTCATGGTATATAAAAA
GTTTGTTCAAAATGGTCTTAGTATTCACATTAGGGAGTCAAACATTTGAA
TCTTATTATcatgtctgtaaaatacaaacgACAATTAGTTATCGACatta
atataaaaataaaaagttgtgTCTTATACCACCTATGTTGAGGTAACAAC
TTTTTAGGGTTGTGTCAAGATGAGGATGTGTCAGATAATCCATCCTGCAC
ATAATAATCACAGCCACTGAATCCAGGGAATGAATCGAATCAATATCATT
AAATGAGCTGGAATATATACTTGACCATATCAAGTCTATCGATCAATCTG
TTCAGTAATTGTTTTCCAGGAGCACAACAAAACTGTTCGCTCTAATTAAT
ACTCAGTCTGTTCTGTCTTTTGATCCTTATTTATAACCATTATGTGATTC
TGTGTTTGGTACAAACCACCCAAATATCGGAAGTGGCGATTACTTTATTC
CAATTTTAGTATTTCTCCACCAACATAAGtgtctttgaaaaaacaatgaG
GTAAGGcgaatataaaaaaatgtagtgtttccggaaaccggccggggaaa
aaaaaaagttttctgacccggccgcagacttcgTTAGTAGTNGTAAGGcg
aatataaaaaaatgtagtgtttccggaaaccggccggaaaaaaaaaagtt
ttctgacCCGGTCGCAGACTTCGTCAGTAgctgatacattagtattcagg
gcctACTTCATACTtcgtacataaaagttatctttaaagttctatttcaa
tgatcttaagttataaaaaatagcaaaaatagtTAATTTCAGGCCGGCCG
CATGAAgaacactacattttttattttcgcctaattTCAAgttctttgat
attttaaaacaaatactTCTTCGTAATCCTTTATAATCATCACAGTGCAA
CATATTTTTTTTGAGGGTAAGGACTTTCAAGGTCACCAATATTCATTACG
TTGATCTATAGATTTTATCAATCCTCATCAAAATCAACGCGGAATCCACA
GTGTTAAAGTTATTTCGATAGGAGATAACTTTGTATGACGTCACTAGTCA
CATGACCACCACCACTGTCCGTTATCATCCTCATTTACTTCATTTAGTTA
CCATATTTCACCTTTCAACgaccaaccaatcagattgcaaaGAGCTGCTT
CACGTGATACTGTTCAAATACTGTTGTATGAACCAGAGAACGTACACTTC
GTAGTGTCTTGCAGCGGCTGAGTTGCGTATACCGTGACGTTCAGTAGGAT
AAACCTGGA Run BLAST on NCBI protein sequence of TCONS_00055577-protein >TCONS_00055577-protein ID=TCONS_00055577-protein|Name=TCONS_00055577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MDLKLKEARSNTTKMAEKNASETKMDWDKKYDVALEQAVFRWIAGVLEDA
TLFDGVSGPNQFKDKLKNGEILCNLMNKLQAGIIKKFKKNAKMPFQQMEN
IGFVNEAMRNYGVQAEYIFVTVDLFEGQNIPQVLLSLRNLGDVATGKGIK
PAFSL Run BLAST on NCBI transcript from alignment at scaffold_253:1268056..1273158- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055577 ID=TCONS_00055577|Name=TCONS_00055577|organism=Clytia hemisphaerica|type=transcript|length=5103bp|location=Sequence derived from alignment at scaffold_253:1268056..1273158- (Clytia hemisphaerica)
TTATTCATTCAGTCAATTTATATTGTACGTTCGCACATTTTTTCAGTTGG
TTCATTGTATGTAATGTAAGTCAAAAGTAGGCGTTGGTTTACTCCTCTTA
TGGATCTCAAATTGAAGTGGGAATTTTTTTCTTGGTACCTTTTCGTTGTT
TGAGAGAAATATAAGAAAACAAAATTTCGAGATCGGGACAGGATTACTGC
CGGGAAGTGGAGCCGTTACCGCAAATTTTTTTTCCGTAAGCGGCCCAAGC
CCTGATTTTTGCGCCGTTACCAGTTATTTATATTTGCGAAATACCCGCAG
GGTTAAATAAATTTTGAGGGTTAGCCCTTATGGAGCCGTGTACCAAACTG
TTGATGAGGTTATAATCAAGCCAAAAATTACGAAGAAGGACTCAACAACT
CGGTATTTCATAACTAATTAATTAAATATTTCCCGTTTTCCAAAAGGGAA
ATATTTATTAAAACGGGCTTTCTCCATAATTTCCCGTGTCAAAACGCCTT
CCGTACGCCCTGACTGACGCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATTTTTACTTTGTCGTAAT
GTAAATTTATTGTAAAGTTTTAGTTTTTGAGTTTAGTTCATCTGCAGTAG
TATTTTTTCAGTAATCCTTAAATCTTGTGAATAAGGTAACATTTAACCAG
ACTTATTGCCCTCATTATATTCAAATTTATATTTTTTTTAGGACTGATAA
GTACATATTTTTAAACACCAAATCAAAGCAAACAACATGCCAGTTCTTTC
TGGACAAATATATGTATACTTTATTATGTGTGCTTTTTTATATATGTCAA
TAATGACCTTCATTTTTAAGGAAATATTTAGTCGCAATTTTGCGATTCTT
GTTTTCCAATTTTTCGACGGCCGAATTTCCGGCGAATTCTGACATGACCC
CCTGATACATGGCTTTCCATACCACTCTCCCGCGGCAATTTCTATTTTTT
ATAAGAACACTTTATAAGAATTATTCCCGCGTTCCTGTGTCCAAGGAGTG
GCAGATGCTTGCTAGCCTACGTACTGAGTACATAGTTCAGCACATTCGGT
CTAAGGGTCTAAGTAATTTTGAATTTTAGATTTCGAATTAGTGGGGTTAG
TTTAAATGTTACGAAAATATCCGCTTTGCGTGTTTTTTTTACAGCAGAAG
ATCAACTGATTTGATTGAAAACATTTTTCTGTGGTATTTTCGTGACATGA
TTTTGCGATCGACAAGATTTTTATTGAAAATAGTGGCAGTTGGAGATTTA
TGAATAGGTGACTGATACGAGGCTCGCAAAGCTCATGTTTGTGTTTGTCT
GTTGTCATTTATCTATCTATGTTCATCTAACCGCGAGAAAAAATGCACTT
TATCTTCTCTTTCATGTGCGAATTTACATAATTGAAAGAGAAATATACGA
GTTAATCTTTAGTAAAGCCTAGCATTGAAAAAAAGCATAATCTTTCCTGT
GAAAGAGACGAGAACGAACCATTTTGCGCCATTTACTAAACTGGGTTCTG
ATTAAGCAGTGACTTTTTTATAGGGAAGCAAGAAGCAATACAACAAAAAT
GGCTGAAAAGAATGCATCAGAAACCAAAATGGATTGGGATAAAAAATACG
ATGTTGCACTAGAACAAGCCGTCTTCAGATGGATCGCTGGTAAGTTAATA
TAAAGTTTGTTTTCGATGTTATACAAGCGAGAAACTGGAACCTCTATAAC
TCAAATGTCCCCTTAACTCGAACACGTTTTATGTTCCGTTTTATTAACGA
TGCCTTATAAACTTTACTAAACCTAATTTTCTTAACTCGAACAAATTTGT
GTACCCCGTACGTGTTCGAGTTATTGAAAATAACTGGTTTTCTCCTCATG
ACTTAATTCGATTTATTGACTTTCAGGTGTGTTAGAAGATGCAACCTTAT
TCGACGGAGTATCTGGTCCAAACCAATTCAAAGATAAACTAAAGAATGGA
GAAATACTTTGTAATTTAATGAACAAGCTACAAGCTGGAATCATCAAAAA
ATTCAAAAAGAATGCTAAAATGCCTTTTCAGCAGATGGAGAACATAGGTT
TCGTGAATGAAGCTATGAGAAACTATGGTGTACAAGCAGAATACATCTTT
GTAACAGTTGATTTATTCGAGGGACAAAATATACCACAAGTTCTTCTCTC
GCTACGCAATTTGGGAGATGTTGCTACAGGCAAGGGAATCAAGCCTGCTT
TCTCGCTGTAGTGTTTTATATATCATCGAATTATCATATTGTATTTTTTT
AGTTTTTGTAACTTTGTATTGCATATTTTTTTATAGTGCCCATGTGGCAT
AACTTTTTAGATTTAGAAATATTTTTTTTCAAATACCCACTTGTCACGTA
CATACGCTTTTTAACGAACTTTGTAACACAAAATATTTAAAAGAAGAAAA
AAACTGAAAGCAAAATGCCAGAAAATGCGTATATGATATGGAATTATCAA
AGATTTGAAGTGCTTTAACAAGATTACAAGCAGCATTAAGATGTTTGACT
TATGTGCCTAAGGAGACGTATTAAATTGTCATGGTATATAAAAAGTTTGT
TCAAAATGGTCTTAGTATTCACATTAGGGAGTCAAACATTTGAATCTTAT
TATCATGTCTGTAAAATACAAACGACAATTAGTTATCGACATTAATATAA
AAATAAAAAGTTGTGTCTTATACCACCTATGTTGAGGTAACAACTTTTTA
GGGTTGTGTCAAGATGAGGATGTGTCAGATAATCCATCCTGCACATAATA
ATCACAGCCACTGAATCCAGGGAATGAATCGAATCAATATCATTAAATGA
GCTGGAATATATACTTGACCATATCAAGTCTATCGATCAATCTGTTCAGT
AATTGTTTTCCAGGAGCACAACAAAACTGTTCGCTCTAATTAATACTCAG
TCTGTTCTGTCTTTTGATCCTTATTTATAACCATTATGTGATTCTGTGTT
TGGTACAAACCACCCAAATATCGGAAGTGGCGATTACTTTATTCCAATTT
TAGTATTTCTCCACCAACATAAGTGTCTTTGAAAAAACAATGAGGTAAGG
CGAATATAAAAAAATGTAGTGTTTCCGGAAACCGGCCGGGGAAAAAAAAA
AGTTTTCTGACCCGGCCGCAGACTTCGTTAGTAGTNGTAAGGCGAATATA
AAAAAATGTAGTGTTTCCGGAAACCGGCCGGAAAAAAAAAAGTTTTCTGA
CCCGGTCGCAGACTTCGTCAGTAGCTGATACATTAGTATTCAGGGCCTAC
TTCATACTTCGTACATAAAAGTTATCTTTAAAGTTCTATTTCAATGATCT
TAAGTTATAAAAAATAGCAAAAATAGTTAATTTCAGGCCGGCCGCATGAA
GAACACTACATTTTTTATTTTCGCCTAATTTCAAGTTCTTTGATATTTTA
AAACAAATACTTCTTCGTAATCCTTTATAATCATCACAGTGCAACATATT
TTTTTTGAGGGTAAGGACTTTCAAGGTCACCAATATTCATTACGTTGATC
TATAGATTTTATCAATCCTCATCAAAATCAACGCGGAATCCACAGTGTTA
AAGTTATTTCGATAGGAGATAACTTTGTATGACGTCACTAGTCACATGAC
CACCACCACTGTCCGTTATCATCCTCATTTACTTCATTTAGTTACCATAT
TTCACCTTTCAACGACCAACCAATCAGATTGCAAAGAGCTGCTTCACGTG
ATACTGTTCAAATACTGTTGTATGAACCAGAGAACGTACACTTCGTAGTG
TCTTGCAGCGGCTGAGTTGCGTATACCGTGACGTTCAGTAGGATAAACCT
GGA Coding sequence (CDS) from alignment at scaffold_253:1268056..1273158- >TCONS_00055577 ID=TCONS_00055577|Name=TCONS_00055577|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_253:1268056..1273158- (Clytia hemisphaerica)
GTGTGTTAGAAGATGCAACCTTATTCGACGGAGTATCTGGTCCAAACCAA
TTCAAAGATAAACTAAAGAATGGAGAAATACTTTGTAATTTAATGAACAA
GCTACAAGCTGGAATCATCAAAAAATTCAAAAAGAATGCTAAAATGCCTT
TTCAGCAGATGGAGAACATAGGTTTCGTGAATGAAGCTATGAGAAACTAT
GGTGTACAAGCAGAATACATCTTTGTAACAGTTGATTTATTCGAGGGACA
AAATATACCACAAGTTCTTCTCTCGCTACGCAATTTGGGAGATGTTGCTA
CAGGCAAGGGAATCAAGCCTGCTTTCTCGCTGTAGGGAAGCAAGAAGCAA
TACAACAAAAATGGCTGAAAAGAATGCATCAGAAACCAAAATGGATTGGG
ATAAAAAATACGATGTTGCACTAGAACAAGCCGTCTTCAGATGGATCGCT
GATGGATCTCAAATTGAAGTGTGTTAGAAGATGCAACCTTATTCGACGGA
GTATCTGGTCCAAACCAATTCAAAGATAAACTAAAGAATGGAGAAATACT
TTGTAATTTAATGAACAAGCTACAAGCTGGAATCATCAAAAAATTCAAAA
AGAATGCTAAAATGCCTTTTCAGCAGATGGAGAACATAGGTTTCGTGAAT
GAAGCTATGAGAAACTATGGTGTACAAGCAGAATACATCTTTGTAACAGT
TGATTTATTCGAGGGACAAAATATACCACAAGTTCTTCTCTCGCTACGCA
ATTTGGGAGATGTTGCTACAGGCAAGGGAATCAAGCCTGCTTTCTCGCTG
TAGGGAAGCAAGAAGCAATACAACAAAAATGGCTGAAAAGAATGCATCAG
AAACCAAAATGGATTGGGATAAAAAATACGATGTTGCACTAGAACAAGCC
GTCTTCAGATGGATCGCTGATGGATCTCAAATTGAAGTGTGTTAGAAGAT
GCAACCTTATTCGACGGAGTATCTGGTCCAAACCAATTCAAAGATAAACT
AAAGAATGGAGAAATACTTTGTAATTTAATGAACAAGCTACAAGCTGGAA
TCATCAAAAAATTCAAAAAGAATGCTAAAATGCCTTTTCAGCAGATGGAG
AACATAGGTTTCGTGAATGAAGCTATGAGAAACTATGGTGTACAAGCAGA
ATACATCTTTGTAACAGTTGATTTATTCGAGGGACAAAATATACCACAAG
TTCTTCTCTCGCTACGCAATTTGGGAGATGTTGCTACAGGCAAGGGAATC
AAGCCTGCTTTCTCGCTGTAGGGAAGCAAGAAGCAATACAACAAAAATGG
CTGAAAAGAATGCATCAGAAACCAAAATGGATTGGGATAAAAAATACGAT
GTTGCACTAGAACAAGCCGTCTTCAGATGGATCGCTGATGGATCTCAAAT
TGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055577-exon-scaffold_253-1575043694:1273043..1273158 | TCONS_00055577-exon-scaffold_253-1575043694:1273043..1273158 | Clytia hemisphaerica | exon |
| TCONS_00055577-exon-scaffold_253-1575043694:1270220..1270335 | TCONS_00055577-exon-scaffold_253-1575043694:1270220..1270335 | Clytia hemisphaerica | exon |
| TCONS_00055577-exon-scaffold_253-1575043694:1268056..1269982 | TCONS_00055577-exon-scaffold_253-1575043694:1268056..1269982 | Clytia hemisphaerica | exon |
| TCONS_00055577-exon-scaffold_253-1510915933:1273043..1273158 | TCONS_00055577-exon-scaffold_253-1510915933:1273043..1273158 | Clytia hemisphaerica | exon |
| TCONS_00055577-exon-scaffold_253-1510915933:1270220..1270335 | TCONS_00055577-exon-scaffold_253-1510915933:1270220..1270335 | Clytia hemisphaerica | exon |
| TCONS_00055577-exon-scaffold_253-1510915933:1268056..1269982 | TCONS_00055577-exon-scaffold_253-1510915933:1268056..1269982 | Clytia hemisphaerica | exon |
| TCONS_00055577-exon-scaffold_253-1491911889:1273043..1273158 | TCONS_00055577-exon-scaffold_253-1491911889:1273043..1273158 | Clytia hemisphaerica | exon |
| TCONS_00055577-exon-scaffold_253-1491911889:1270220..1270335 | TCONS_00055577-exon-scaffold_253-1491911889:1270220..1270335 | Clytia hemisphaerica | exon |
| TCONS_00055577-exon-scaffold_253-1491911889:1268056..1269982 | TCONS_00055577-exon-scaffold_253-1491911889:1268056..1269982 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:1268056..1273158 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
|
