TCONS_00054748-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054748-protein
Unique NameTCONS_00054748-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length217

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054748-protein ID=TCONS_00054748-protein|Name=TCONS_00054748-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MSLFGSSNANKGFSFGGSTTTTTTATNPNKDIEVSQPPSDTVSCLKFSPN
ANFLIASSWDNNVRCWEVQGNGQTVPKAQQSHTKPILSCCWHADGSKVFT
AGSDNQAKVWDLASNQSVVCAQHDAPIKTIHWIQGQNYQCLMTGSWDKTL
KFWDTRSASPMATMQTGEKVYCADVMYPMAIVSTAQRGILVYQLNNQPQE
YKKIESPLKYQVKWINF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034493XLOC_034493Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054748TCONS_00054748Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 54..68
score: 28.91
coord: 98..112
score: 30.75
coord: 141..155
score: 35.37
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 73..111
e-value: 2.4E-7
score: 40.4
coord: 114..154
e-value: 0.011
score: 25.0
coord: 28..67
e-value: 5.0E-5
score: 32.7
IPR001680WD40 repeatPFAMPF00400WD40coord: 81..111
e-value: 3.1E-4
score: 21.4
coord: 123..154
e-value: 0.0044
score: 17.7
coord: 40..66
e-value: 6.1E-6
score: 26.8
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 35..69
score: 10.676
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 141..163
score: 9.506
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 79..120
score: 12.747
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 17..217
e-value: 1.8E-44
score: 151.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..36
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 98..112
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 141..155
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 35..163
score: 21.015
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 36..215

Blast
[Close]
BLAST of TCONS_00054748-protein vs. Swiss-Prot (Human)
Match: RAE1L (mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 7.230e-98
Identity = 134/221 (60.63%), Postives = 170/221 (76.92%), Query Frame = 0 
Query:    1 MSLFGSSNANKGFSFGGST---TTTTTATNPNKDIEVSQPPSDTVSCLKFSPN---ANFLIASSWDNNVRCWEVQGNGQTVPKAQQSHTKPILSCCWHADGSKVFTAGSDNQAKVWDLASNQSVVCAQHDAPIKTIHWIQGQNYQCLMTGSWDKTLKFWDTRSASPMATMQTGEKVYCADVMYPMAIVSTAQRGILVYQLNNQPQEYKKIESPLKYQVKWI 215
            MSLFG+++   GF   G++   + TT   NP KDIEV+  P D++ CL FSP     NFLIA SW N+VRCWEVQ +GQT+PKAQQ HT P+L  CW  DGSKVFTA  D  AK+WDL+SNQ++  AQHDAP+KTIHWI+  NY C+MTGSWDKTLKFWDTRS++PM  +Q  E+ YCADV+YPMA+V+TA+RG++VYQL NQP E+++IESPLK+Q + +
Sbjct:    1 MSLFGTTS---GFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCV 218
The following BLAST results are available for this feature:
BLAST of TCONS_00054748-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAE1L7.230e-9860.63mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV... [more]
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