TCONS_00054748 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054748
Unique NameTCONS_00054748
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length750

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054748 ID=TCONS_00054748|Name=TCONS_00054748|organism=Clytia hemisphaerica|type=transcript|length=750bp
aatgtcattttttatgtaTCTTGATATTTTTTAGTAAATATTTAAATTAA
AATGTCATTATTTGGATCGTCAAATGCAAACAAGGGTTTTTCATTTGGAG
GTTCTACAACCACCACCACAACTGCAACCAATCCAAATAAAGATATCGAA
GTATCGCAACCTCCTTCTGATACTGTCAGTTGTTTAAAATTCAGTCCAAA
TGCAAATTTCCTCATTGCAAGTTCATGGGATAATAATGTGAGGTGCTGGG
AAGTACAAGGTAATGGTCAAACAGTACCGAAAGCTCAACAGTCTCACACA
AAACCAATTCTGTCTTGTTGTTGGCATGCTGATGGCAGTAAGGTTTTCAC
AGCCGGTTCAGACAACCAAGCCAAAGTGTGGGATCTAGCTTCAAATCAAT
CAGTAGTTTGTGCTCAGCATGATGCTCCAATTAAGACAATTCATTGGATC
CAAGGACAAAATTATCAGTGCTTAATGACAGGGAGTTGGGACAAGACGTT
GAAATTTTGGGATACTCGTTCTGCTTCACCCATGGCTACCATGCAAACTG
GTGAAAAAGTTTATTGTGCTGATGTCATGTATCCCATGGCAATAGTGTCC
ACGGCACAAAGGGGAATTCTAGTCTATCAATTGAATAACCAACCACAGGA
GTATAagAAAATCGAGTCACCTCTAAAGTATCAGGTAAAATGGATTAATT
TTTAGTTATTTTATTCGATTAATGAAACTTGTTTGATAACTATATCATTA
Run BLAST on NCBI

protein sequence of TCONS_00054748-protein

>TCONS_00054748-protein ID=TCONS_00054748-protein|Name=TCONS_00054748-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MSLFGSSNANKGFSFGGSTTTTTTATNPNKDIEVSQPPSDTVSCLKFSPN
ANFLIASSWDNNVRCWEVQGNGQTVPKAQQSHTKPILSCCWHADGSKVFT
AGSDNQAKVWDLASNQSVVCAQHDAPIKTIHWIQGQNYQCLMTGSWDKTL
KFWDTRSASPMATMQTGEKVYCADVMYPMAIVSTAQRGILVYQLNNQPQE
YKKIESPLKYQVKWINF
Run BLAST on NCBI

transcript from alignment at scaffold_245:40262..42716+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054748 ID=TCONS_00054748|Name=TCONS_00054748|organism=Clytia hemisphaerica|type=transcript|length=2455bp|location=Sequence derived from alignment at scaffold_245:40262..42716+ (Clytia hemisphaerica)
aatgtcattttttatgtaTCTTGATATTTTTTAGTAAATATTTAAATTAA
AATGTCATTATTTGGATCGTCAAATGCAAACAAGGGTTTTTCATTTGGAG
GTTCTACAACCACCACCACAACTGCAACCAATCCAAATAAAGATATCGAA
GTATCGCAACCTCCTTCTGATACTGTCAGTTGTTTAAAATTCAGTCCAAA
TGCAAATTTCCTCATTGCAAGTTCATGGGATAATAATGTAAGTCCTTAAA
TGTATTTaataattgattttgaaataaaaaatgcttagaccattttcaga
cattacggttccgtatcgtttcaaaacgaaacggttccgaaacaggtgtg
aacgtcaaaaaagaagacgttacaaagcaaaattGATTGAAACGGTTTCg
ttccactattttcatcggaacgaaACTGCTCTGTTTTCTTGTTCTGAAAC
GCTctgaaaccaatatgaacactcgatccgtaacgaaaaccATACTGGAG
GGATACGAAactgtaacgtctgaacatggtcttagttTCGTTCTTAATAA
GTTACCCCTAGATTACCCAGATGTATACCCAGTATCTCATGTAGTCCTAA
ATgtgtcattttttgtttttttctacttGTGCTTTATTGTTTTCAGGTGA
GGTGCTGGGAAGTACAAGGTAATGGTCAAACAGTACCGAAAGCTCAACAG
TCTCACACAAAACCAATTCTGTCTTGTTGTTGGCATGCTGTAAGTAACTC
GAtattggaaaattttaacagTCAATTGTTTAATATTTATCATTTCAATA
TTCATTAGAAACACCTAATGATTCTTTCGTCTACGCAAAAAGGATTAAtt
caatttcacaatttttttatttttgatgggCAGAATTCGCTTGAAATTAG
TAATTAAAATGCCTTTGAGTgataattttaatatttaaatctgaTAATTT
GACACAAAATTTATGAAATCATCAAAGTGTCATTTTTTTAGGTATgggga
aaaatggaaaatttgaaatttgataggggataaaaaagaggggggaatgg
agaaaaattggattttaagTAGGGGGAACCAACCtgggaggacactatga
ataAGTCTAATTTATTTTACTGAAATTTCATTCTCTAAAGTATTCTTCAT
ATTTGTATGACCTGTTTCGCATTTCTATCTTCATTTGAAATTGTAGGATG
GCAGTAAGGTTTTCACAGCCGGTTCAGACAACCAAGCCAAAGTGTGGGAT
CTAGCTTCAAATCAATCAGTAGTTTGTGCTCAGGTAAGTAAATCGCACCA
GTCCTGCTACcttaaagaaagaattttttgcaggaacaaattttcgcaga
acaaatttttgtggaatttgATTTCGctgttttttgacaaatccgcgaaa
ttaaattctgcgaaacacgaatattctcaTGATTGGAAAAAAACACCTAT
ACctataaaattggtctttttagggcaaaataggacatattttaaacaaa
aaatcctcTTAACCGCGAAAATagattccgcgaaaatttcttcccgcaaa
aatttcttcccttaaggtactcaTAATTTTGAAGACCCATGTTAAATATA
AAGTGCAATTTTGATTTAATCGTTTCTTTGTGTCAAAGAATCGTGCCAAA
TATATACTGATCCTTCTGAATTACATTTTCAGCATGATGCTCCAATTAAG
ACAATTCATTGGATCCAAGGACAAAATTATCAGTGCTTAATGACAGGGAG
TTGGGACAAGACGTTGAAATTTTGGGATACTCGTTCTGCTTCACCCATGG
CTACCATGCAAACTGGTGAAAAAGTTTATTGNAAAGTGCAATTTTGATTT
AATCCTTTCTTTGTGTCAAAGAATCGTGCCAAATATATACTGATCCTTCT
GAATTACATTTTCAGCATGATGCTCCAATTAAGACAATTCATTGGATCCA
AGGACAAAATTATCAGTGCTTAATGACAGGGAGTTGGGACAAGACGTTGA
AATTTTGGGATACTCGTTCTGCTTCACCCATGGCTACCATGCAAACTGGT
GAAAAAGTTTATTGTGCTGATGTCATGTATCCCATGGCAATAGTGTCCAC
GGCACAAAGGGGAATTCTAGTCTATCAATTGAATAACCAACCACAGGAGT
ATAaggtatcttataaaaactcaaaAGAATCAAAACTCAGTTTGCGAGAA
AAGCTCAACGTTTATAATATGTTTCTGGAGAACATTGTTATCACTGATTG
ATTTATATATGCAGCTTCCAGTGGCTGGGGAAAACTAAAAAATGAGGGTA
GCTTCATTGTATGAGTGTgctcttcttttttaaatcacatttttttattt
cgcTTTTTACAGAAAATCGAGTCACCTCTAAAGTATCAGGTAAAATGGAT
TAATTTTTAGTTATTTTATTCGATTAATGAAACTTGTTTGATAACTATAT
CATTA

Coding sequence (CDS) from alignment at scaffold_245:40262..42716+

>TCONS_00054748 ID=TCONS_00054748|Name=TCONS_00054748|organism=Clytia hemisphaerica|type=CDS|length=3270bp|location=Sequence derived from alignment at scaffold_245:40262..42716+ (Clytia hemisphaerica)
ATGTCATTATTTGGATCGTCAAATGCAAACAAGGGTTTTTCATTTGGAGG
TTCTACAACCACCACCACAACTGCAACCAATCCAAATAAAGATATCGAAG
TATCGCAACCTCCTTCTGATACTGTCAGTTGTTTAAAATTCAGTCCAAAT
GCAAATTTCCTCATTGCAAGTTCATGGGATAATAATGTGAGGTGCTGGGA
AGTACAAGGTAATGGTCAAACAGTACCGAAAGCTCAACAGTCTCACACAA
AACCAATTCTGTCTTGTTGTTGGCATGCTGATGGCAGTAAGGTTTTCACA
GCCGGTTCAGACAACCAAGCCAAAGTGTGGGATCTAGCTTCAAATCAATC
AGTAGTTTGTGCTCAGCATGATGCTCCAATTAAGACAATTCATTGGATCC
AAGGACAAAATTATCAGTGCTTAATGACAGGGAGTTGGGACAAGACGTTG
AAATTTTGGGATACTCGTTCTGCTTCACCCATGGCTACCATGCAAACTGG
TGAAAAAGTTTATTGTGCTGATGTCATGTATCCCATGGCAATAGTGTCCA
CGGCACAAAGGGGAATTCTAGTCTATCAATTGAATAACCAACCACAGGAG
TATAagAAAATCGAGTCACCTCTAAAGTATCAGGTAAAATGGATTAATTT
TTAGATGTCATTATTTGGATCGTCAAATGCAAACAAGGGTTTTTCATTTG
GAGGTTCTACAACCACCACCACAACTGCAACCAATCCAAATAAAGATATC
GAAGTATCGCAACCTCCTTCTGATACTGTCAGTTGTTTAAAATTCAGTCC
AAATGCAAATTTCCTCATTGCAAGTTCATGGGATAATAATGTGAGGTGCT
GGGAAGTACAAGGTAATGGTCAAACAGTACCGAAAGCTCAACAGTCTCAC
ACAAAACCAATTCTGTCTTGTTGTTGGCATGCTGATGGCAGTAAGGTTTT
CACAGCCGGTTCAGACAACCAAGCCAAAGTGTGGGATCTAGCTTCAAATC
AATCAGTAGTTTGTGCTCAGCATGATGCTCCAATTAAGACAATTCATTGG
ATCCAAGGACAAAATTATCAGTGCTTAATGACAGGGAGTTGGGACAAGAC
GTTGAAATTTTGGGATACTCGTTCTGCTTCACCCATGGCTACCATGCAAA
CTGGTGAAAAAGTTTATTGTGCTGATGTCATGTATCCCATGGCAATAGTG
TCCACGGCACAAAGGGGAATTCTAGTCTATCAATTGAATAACCAACCACA
GGAGTATAagAAAATCGAGTCACCTCTAAAGTATCAGGTAAAATGGATTA
ATTTTTAGATGTCATTATTTGGATCGTCAAATGCAAACAAGGGTTTTTCA
TTTGGAGGTTCTACAACCACCACCACAACTGCAACCAATCCAAATAAAGA
TATCGAAGTATCGCAACCTCCTTCTGATACTGTCAGTTGTTTAAAATTCA
GTCCAAATGCAAATTTCCTCATTGCAAGTTCATGGGATAATAATGTGAGG
TGCTGGGAAGTACAAGGTAATGGTCAAACAGTACCGAAAGCTCAACAGTC
TCACACAAAACCAATTCTGTCTTGTTGTTGGCATGCTGATGGCAGTAAGG
TTTTCACAGCCGGTTCAGACAACCAAGCCAAAGTGTGGGATCTAGCTTCA
AATCAATCAGTAGTTTGTGCTCAGCATGATGCTCCAATTAAGACAATTCA
TTGGATCCAAGGACAAAATTATCAGTGCTTAATGACAGGGAGTTGGGACA
AGACGTTGAAATTTTGGGATACTCGTTCTGCTTCACCCATGGCTACCATG
CAAACTGGTGAAAAAGTTTATTGTGCTGATGTCATGTATCCCATGGCAAT
AGTGTCCACGGCACAAAGGGGAATTCTAGTCTATCAATTGAATAACCAAC
CACAGGAGTATAagAAAATCGAGTCACCTCTAAAGTATCAGGTAAAATGG
ATTAATTTTTAGATGTCATTATTTGGATCGTCAAATGCAAACAAGGGTTT
TTCATTTGGAGGTTCTACAACCACCACCACAACTGCAACCAATCCAAATA
AAGATATCGAAGTATCGCAACCTCCTTCTGATACTGTCAGTTGTTTAAAA
TTCAGTCCAAATGCAAATTTCCTCATTGCAAGTTCATGGGATAATAATGT
GAGGTGCTGGGAAGTACAAGGTAATGGTCAAACAGTACCGAAAGCTCAAC
AGTCTCACACAAAACCAATTCTGTCTTGTTGTTGGCATGCTGATGGCAGT
AAGGTTTTCACAGCCGGTTCAGACAACCAAGCCAAAGTGTGGGATCTAGC
TTCAAATCAATCAGTAGTTTGTGCTCAGCATGATGCTCCAATTAAGACAA
TTCATTGGATCCAAGGACAAAATTATCAGTGCTTAATGACAGGGAGTTGG
GACAAGACGTTGAAATTTTGGGATACTCGTTCTGCTTCACCCATGGCTAC
CATGCAAACTGGTGAAAAAGTTTATTGTGCTGATGTCATGTATCCCATGG
CAATAGTGTCCACGGCACAAAGGGGAATTCTAGTCTATCAATTGAATAAC
CAACCACAGGAGTATAagAAAATCGAGTCACCTCTAAAGTATCAGGTAAA
ATGGATTAATTTTTAGATGTCATTATTTGGATCGTCAAATGCAAACAAGG
GTTTTTCATTTGGAGGTTCTACAACCACCACCACAACTGCAACCAATCCA
AATAAAGATATCGAAGTATCGCAACCTCCTTCTGATACTGTCAGTTGTTT
AAAATTCAGTCCAAATGCAAATTTCCTCATTGCAAGTTCATGGGATAATA
ATGTGAGGTGCTGGGAAGTACAAGGTAATGGTCAAACAGTACCGAAAGCT
CAACAGTCTCACACAAAACCAATTCTGTCTTGTTGTTGGCATGCTGATGG
CAGTAAGGTTTTCACAGCCGGTTCAGACAACCAAGCCAAAGTGTGGGATC
TAGCTTCAAATCAATCAGTAGTTTGTGCTCAGCATGATGCTCCAATTAAG
ACAATTCATTGGATCCAAGGACAAAATTATCAGTGCTTAATGACAGGGAG
TTGGGACAAGACGTTGAAATTTTGGGATACTCGTTCTGCTTCACCCATGG
CTACCATGCAAACTGGTGAAAAAGTTTATTGTGCTGATGTCATGTATCCC
ATGGCAATAGTGTCCACGGCACAAAGGGGAATTCTAGTCTATCAATTGAA
TAACCAACCACAGGAGTATAagAAAATCGAGTCACCTCTAAAGTATCAGG
TAAAATGGATTAATTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034493XLOC_034493Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054748-exon-scaffold_245-1491911889:40262..40498TCONS_00054748-exon-scaffold_245-1491911889:40262..40498Clytia hemisphaericaexon
TCONS_00054748-exon-scaffold_245-1510915933:40262..40498TCONS_00054748-exon-scaffold_245-1510915933:40262..40498Clytia hemisphaericaexon
TCONS_00054748-exon-scaffold_245-1575043694:40262..40498TCONS_00054748-exon-scaffold_245-1575043694:40262..40498Clytia hemisphaericaexon
TCONS_00054748-exon-scaffold_245-1491911889:40908..41000TCONS_00054748-exon-scaffold_245-1491911889:40908..41000Clytia hemisphaericaexon
TCONS_00054748-exon-scaffold_245-1510915933:40908..41000TCONS_00054748-exon-scaffold_245-1510915933:40908..41000Clytia hemisphaericaexon
TCONS_00054748-exon-scaffold_245-1575043694:40908..41000TCONS_00054748-exon-scaffold_245-1575043694:40908..41000Clytia hemisphaericaexon
TCONS_00054748-exon-scaffold_245-1491911889:41458..41544TCONS_00054748-exon-scaffold_245-1491911889:41458..41544Clytia hemisphaericaexon
TCONS_00054748-exon-scaffold_245-1510915933:41458..41544TCONS_00054748-exon-scaffold_245-1510915933:41458..41544Clytia hemisphaericaexon
TCONS_00054748-exon-scaffold_245-1575043694:41458..41544TCONS_00054748-exon-scaffold_245-1575043694:41458..41544Clytia hemisphaericaexon
TCONS_00054748-exon-scaffold_245-1491911889:42177..42416TCONS_00054748-exon-scaffold_245-1491911889:42177..42416Clytia hemisphaericaexon
TCONS_00054748-exon-scaffold_245-1510915933:42177..42416TCONS_00054748-exon-scaffold_245-1510915933:42177..42416Clytia hemisphaericaexon
TCONS_00054748-exon-scaffold_245-1575043694:42177..42416TCONS_00054748-exon-scaffold_245-1575043694:42177..42416Clytia hemisphaericaexon
TCONS_00054748-exon-scaffold_245-1491911889:42624..42716TCONS_00054748-exon-scaffold_245-1491911889:42624..42716Clytia hemisphaericaexon
TCONS_00054748-exon-scaffold_245-1510915933:42624..42716TCONS_00054748-exon-scaffold_245-1510915933:42624..42716Clytia hemisphaericaexon
TCONS_00054748-exon-scaffold_245-1575043694:42624..42716TCONS_00054748-exon-scaffold_245-1575043694:42624..42716Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054748-proteinTCONS_00054748-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:40262..42716 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
84.1877	73.681	103.573	96.2314	85.0843	62.1257	60.1137	64.5655	58.1768	50.8433	34.3894	47.1282	47.3178	52.4513	50.5269	58.6638	86.3773	61.6787	35.8789	37.758	58.2205	55.3488	52.5517	51.9751	38.2968	38.7709	33.6593	33.1149	29.7992	27.5415
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00054748 vs. Swiss-Prot (Human)
Match: RAE1L (mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 7.586e-94
Identity = 134/221 (60.63%), Postives = 170/221 (76.92%), Query Frame = 1 
Query:   52 MSLFGSSNANKGFSFGGSX---XXXXXXXNPNKDIEVSQPPSDTVSCLKFSPN---ANFLIASSWDNNVRCWEVQGNGQTVPKAQQSHTKPILSCCWHADGSKVFTAGSDNQAKVWDLASNQSVVCAQHDAPIKTIHWIQGQNYQCLMTGSWDKTLKFWDTRSASPMATMQTGEKVYCADVMYPMAIVSTAQRGILVYQLNNQPQEYKKIESPLKYQVKWI 696
            MSLFG+++   GF   G++   + TT   NP KDIEV+  P D++ CL FSP     NFLIA SW N+VRCWEVQ +GQT+PKAQQ HT P+L  CW  DGSKVFTA  D  AK+WDL+SNQ++  AQHDAP+KTIHWI+  NY C+MTGSWDKTLKFWDTRS++PM  +Q  E+ YCADV+YPMA+V+TA+RG++VYQL NQP E+++IESPLK+Q + +
Sbjct:    1 MSLFGTTS---GFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCV 218
The following BLAST results are available for this feature:
BLAST of TCONS_00054748 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAE1L7.586e-9460.63mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV... [more]
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