TCONS_00054650-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054650-protein
Unique NameTCONS_00054650-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054650-protein ID=TCONS_00054650-protein|Name=TCONS_00054650-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp
MYDGDGDSTMEPTTENTTTLEKYPCFVKIAEDETLENFIELPTEKCGSML
LSTIQGQYPNAIGLKYKSPSGSWRGVRLSESMLDPPFEGWGEAVYSITLP
KSEKDTGKRKMVEESPSREPEAKLVKTGSENEYLSDLIVLGLPYKAREDN
VKDYFQQFGELAMHEIKYDPVTKQSRGFAFIRFKTVAAAQKTLKTTHTIL
GRRCEVRLPKKKEEVPLRKLFIGRLPDDTKQEDLDSYFGQFGELTDVYIP
TPYRSFGFVTFASSDVARTVLLQSQHTLKGQRINVTNAEPKDEKGGKSSR
SGRGNSRSSSRRHHEHSFDFKDMRELMYNSRSGLQYQHGSSRRSPPREVL
DQRPSIPYTTHPAATNPYQPNDYRTLQAGGYGAPPDMRPAYPPTGQQQQF
DSREMQYGAYWSTSK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034424XLOC_034424Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054650TCONS_00054650Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 136..207
e-value: 9.5E-14
score: 61.7
coord: 219..286
e-value: 2.4E-15
score: 67.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 137..198
e-value: 5.1E-12
score: 45.4
coord: 220..273
e-value: 9.5E-10
score: 38.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 135..211
score: 14.181
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 218..290
score: 15.119
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 213..315
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 127..214
NoneNo IPR availableGENE3D3.30.70.330coord: 98..212
e-value: 6.2E-17
score: 61.3
NoneNo IPR availableGENE3D3.30.70.330coord: 213..317
e-value: 8.5E-20
score: 70.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 334..403
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 281..322
NoneNo IPR availableCDDcd12322RRM2_TDP43coord: 218..289
e-value: 5.25877E-29
score: 106.968

Blast
[Close]
BLAST of TCONS_00054650-protein vs. Swiss-Prot (Human)
Match: TADBP (TAR DNA-binding protein 43 OS=Homo sapiens GN=TARDBP PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 4.366e-65
Identity = 115/281 (40.93%), Postives = 168/281 (59.79%), Query Frame = 0 
Query:   26 FVKIAEDETLENFIELPTEKCGSMLLSTIQGQYPNAIGLKYKSP-SGSWRGVRLSESMLDPPFEGWGEAVYSITLPKSEKDTGKRKMVEESPSREPEAKLVKTGSENEYLSDLIVLGLPYKAREDNVKDYFQQFGELAMHEIKYDPVTKQSRGFAFIRFKTVAAAQKTLKTTHTILGRRCEVRLP--KKKEEVPL--RKLFIGRLPDDTKQEDLDSYFGQFGELTDVYIPTPYRSFGFVTFASSDVARTVLLQSQHTLKGQRINVTNAEPKDEKGGKSSRS 301
            ++++ EDE  E  IE+P+E  G++LLST+  Q+P A GL+Y++P S   RGVRL E +L  P  GWG  VY +  PK  K    RKM E   S       VK     +  SDLIVLGLP+K  E ++K+YF  FGE+ M ++K D  T  S+GF F+RF       K +   H I GR C+ +LP  K+ ++ PL  RK+F+GR  +D  +++L  +F Q+G++ DV+IP P+R+F FVTFA   +A++ L      +KG  ++++NAEPK     +  RS
Sbjct:    4 YIRVTEDENDEP-IEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNK----RKMDETDAS-----SAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQS-LCGEDLIIKGISVHISNAEPKHNSNRQLERS 273
The following BLAST results are available for this feature:
BLAST of TCONS_00054650-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TADBP4.366e-6540.93TAR DNA-binding protein 43 OS=Homo sapiens GN=TARD... [more]
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