TCONS_00054650 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054650
Unique NameTCONS_00054650
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2172

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054650 ID=TCONS_00054650|Name=TCONS_00054650|organism=Clytia hemisphaerica|type=transcript|length=2172bp
TGAATGACtattaattagatttttttatcaaaatatcttATATTTGAATT
ATTTCCCAGgcttaaaaagtaaaaataagcaaacaacACATCAATCACAT
AATTCAACATGTACGACGGTGATGGTGACTCAACAATGGAACCAACAACA
GAAAATACAACAACTCTGGAAAAATACCCATGTTTTGTCAAAATTGCCGA
AGATGAAACActagaaaatttcattgaattacCAACTGAAAAATGTGGTA
GTATGCTGTTATCTACTATTCAAGGACAATACCCAAATGCTATTGGTTTG
AAGTATAAAAGTCCTTCAGGATCATGGAGAGGAGTACGATTATCAGAAAG
CATGCTTGATCCACCTTTTGAAGGTTGGGGAGAAGCCGTCTATTCCATCA
CACTACCAAAATCAGAGAAAGACACCGGGAAACGTAAAATGGTGGAGGAG
TCGCCCAGTAGAGAGCCAGAGGCTAAATTAGTCAAGACTggatctgaaaa
tgaatatctCTCAGATTTGATTGTTTTGGGTTTACCTTACAAAGCACGAG
AAGACAACGTGAAAGATTATTTTCAGCAGTTTGGTGAATTGGCTATGCAC
GagatcAAGTATGACCCAGTAACAAAGCAATCACGTGGGTTTGCTTTCAT
TCGTTTCAAGACAGTAGCTGCAGCACagaaaactctcaaaacaactCACA
CCATCCTTGGTCGTAGGTGTGAAGTCAGATTACCGAAGAAAAAGGAAGAA
GTTCCCTTACGTAAATTGTTCATTGGACGATTACCAGATGACACCAAGCA
AGAAGACCTTGATAGTTATTTCGGACAGTTCGGAGAGTTGACGGACGTCT
ATATACCGACGCCATACCGAAGTTTTGGATTTGTGACGTTCGCTTCTTCA
GATGTTGCCAGGACGGTGCTTTTACAAAGTCAACACACGTTAAAAGGTCA
ACGTATAAACGTGACAAATGCCGAACCAAAAGACGAAAAGGGTGGAAAAT
CCTCACGTAGCGGACGTGGTAATTCGCGCTCGTCTTCGCGGCGCCATCAC
GAGCATTCGTTTGATTTCAAAGACATGCGAGAACTGATGTACAACTCTAG
ATCTGGCCTACAATATCAACATGGGTCATCGAGGCGTTCTCCGCCACGTG
AGGTTCTTGATCAAAGACCAAGTATCCCATACACTACTCACCCAGCAGCA
ACCAATCCTTACCAACCGAATGACTATAGGACGCTTCAAGCAGGTGGATA
CGGAGCACCACCAGATATGAGACCGGCATACCCACCTACTGGACAGCAGC
AACAATTTGACTCTCGCGAGATGCAATATGGTGCTTACTGGAGTACTAGC
AAGTAATTTGAGaatttttggctGTTTTATTAACAAAAGGACAACACAAG
GAAAGGATCTACTTGCTTATCCGACAAAAATTGGTATGCTGGTATAGATG
TCAACATCATAGTCAACATTCGTCTTAAGATATGTCATTGAACCAAGAAT
TACTTGTCAGATGAAATCTTATTTTGGAATCAAGCAAGCATAAGGTGCCA
GGCAAAAAGAGGAACGAGTATGTACTGCTTGTCAAGCAACCCTTTTTCTA
TCTACACGTCTCCTATcTACTACAATatgacaaaaataatttaaaagaaa
gttaaaaCTATGAAACCATGGTGTTTTAAATCTGTGTAAAAATGGCATTC
GTATTGAAAAAGCTGGAACGTAAAAAAGAAATCGACGACGTCATAAAAAC
AACAATAGACAAAGTGTTGTGTTTACGTTTTGGGCGTGACTCGGACCCAG
GCTGTTTACATTGTGACGACATTTTGGCGAAAACATGTCATTCTTTATCC
AACATGGCGGACATTTATCTGGTGGATGTTGATCAAGTCGAAGTTTACAC
TCAATATTTTGATATATCTTTAATTCCGGCCacagttttcttttttaacG
GACAGCACATGAAAGTAGATTACGGAACACAAGATAATACGAAATTTATC
GGTCCTTTCCATTCTAAGCAAGACTTTATTGATCTGATTGAAATAATATA
CAGAGGTGCAATGAAAGGAAAATTGATTGTCAACTCTCCAATCGATCCTA
AACATATTCCAAGATATAATTTATTGTATAATGATATTTGAAGTCATGaa
gaatatttgtttttatcacGTG
Run BLAST on NCBI

protein sequence of TCONS_00054650-protein

>TCONS_00054650-protein ID=TCONS_00054650-protein|Name=TCONS_00054650-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp
MYDGDGDSTMEPTTENTTTLEKYPCFVKIAEDETLENFIELPTEKCGSML
LSTIQGQYPNAIGLKYKSPSGSWRGVRLSESMLDPPFEGWGEAVYSITLP
KSEKDTGKRKMVEESPSREPEAKLVKTGSENEYLSDLIVLGLPYKAREDN
VKDYFQQFGELAMHEIKYDPVTKQSRGFAFIRFKTVAAAQKTLKTTHTIL
GRRCEVRLPKKKEEVPLRKLFIGRLPDDTKQEDLDSYFGQFGELTDVYIP
TPYRSFGFVTFASSDVARTVLLQSQHTLKGQRINVTNAEPKDEKGGKSSR
SGRGNSRSSSRRHHEHSFDFKDMRELMYNSRSGLQYQHGSSRRSPPREVL
DQRPSIPYTTHPAATNPYQPNDYRTLQAGGYGAPPDMRPAYPPTGQQQQF
DSREMQYGAYWSTSK
Run BLAST on NCBI

transcript from alignment at scaffold_243:508705..514869-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054650 ID=TCONS_00054650|Name=TCONS_00054650|organism=Clytia hemisphaerica|type=transcript|length=6165bp|location=Sequence derived from alignment at scaffold_243:508705..514869- (Clytia hemisphaerica)
TGAATGACTATTAATTAGATTTTTTTATCAAAATATCTTATATTTGAATT
ATTTCCCAGGCTTAAAAAGTAAAAATAAGCAAACAACACATCAATCACAT
AATTCAACATGTACGACGGTGATGGTGACTCAACAATGGAACCAACAACA
GAAAATACAACAACTCTGGAAAAATACCCATGTTTTGTCAAAATTGCCGA
AGATGAAACACTAGAAAATTTCATTGAATTACCAACTGAAAAATGTGGTA
GTATGCTGTTATCTACTATTCAAGGACAATACCCAAATGCTATTGGTTTG
AAGTATAAAAGTCCTTCAGGATCATGGAGAGGAGTACGATTATCAGAAAG
CATGCTTGATCCACCTTTTGAAGGTTGGGGAGAAGCCGTCTATTCCATCA
CACTACCAAAATCAGAGAAAGGTTAGATGTTTATTCATGTAGTTCTTTGT
TCCTTTTTTTCAGGAATATTTCTAATCCCTACCCTTTTTTTCAAAAATAC
AGAAACATATTCGATGATACGATGTAGAGGTTGTTGATTTGAAACAGACT
TAGTTGTAATTTAAATTGATATCATTATCGTATCAATGTGAAACATGAAA
TCTTAGTGTGATTTTTAGAGTAGTGGGTAGTCAAAGANCTTATTTATGCA
CTTCTTTGTTCTTTTTTTCAGGAATATTTCTTGTCCCCTGCCCTTTTTTT
CAAAAATACAGAAACATATTCGATGATACGATGTAGAGGTTGTTGATTTG
AAACAGACTTAGTTGTAATTCAAATTGATATCATTATCGTATCAATGTGA
AACATGAAATCTTAGTGTAATTTTTAGAGTAGTGGGTAGTCAAAGAAAAG
ATCTCTACCCAAATTTTAACAGGCTACAAACCATGGGATGAAGCATTTGT
AGGAAAAGGGGTCCCAACCAAGAAGACTACTTATACTTTCATACTCTCTT
GAAGGACAAGACGAAAGAGCTTATCTTTAAAACCTCGTATTGCGTCCGTC
GTTATTTTTAGGCTTTTATTGAAACTCACAATTTCTTCTGTTTTAGACAC
CGGGAAACGTAAAATGGTGGAGGAGTCGCCCAGTAGAGAGCCAGAGGCTA
AATTAGTCAAGACTGGATCTGAAAATGAATATCTCTCAGATTTGATTGTT
TTGGGTTTACCTTACAAAGCACGAGAAGACAACGTGAAAGATTATTTTCA
GCAGTTTGGTGAATTGGCTATGCACGAGGTAAATAAATAAATTCATAATA
CCAAAATTACAAAAAACATTTACTTTACAATCTATTAAATCGTTGTTTTT
CGAATTATCACATTGTTAATGTCAACAACCACTTTATTTTTAAGGTAACT
TGAATCTTTACTAAACTGAATACTAAAGGAATGGTACCTGAATCTAAAAC
ATTAAAACCAAACGGTTCTGATATCAAAGTCCAGTTTCATCGTTCTGATT
GTTTTCTTTTCTTTTTTAAGATCAAGTATGACCCAGTAACAAAGCAATCA
CGTGGGTTTGCTTTCATTCGTTTCAAGACAGTAGCTGCAGCACAGAAAAC
TCTCAAAACAACTCACACCATCCTTGGTCGTAGGTGTGAAGTCAGATTAC
CGAAGAAAAAGGTATTGTAGTTTGAACTAATTTACAATGAATTTTTAAAC
TTTTTTTTTTTTTCTGCAAGCATGTTGGAAATGTATCAAATATTAAGCAG
ATTTTCAATAGGTAAAAGTTGGCTATTGAAAATTTATTAACCTGAGGCGA
TGTATTCAACGACGCGAAGTGGAGTATTGACTAATAAGCAGTATCACGAA
TCGAAAATACGAAATAAATTAGATTAAAACAAGAACCTCTTAAGCCACTA
GTTATTGGCTGGTTAAAGTTTTCAAACACAGTAATGGTTTATTTGTGGGT
TTGAATTTGTAGCTTTTGTGTCCTCTATGTATAGGATCAAATAAGTGAAA
CCAACAGTTTTCAACTGGATCAATAGACGGTAAATCAATTCTTTACCAAT
TTGTTTTTCATCTTTTGTTAAGTTACGCAAACGTTCGAATCTGTAAAGGC
GATCCATTACGCATATCGAACGTTTGTTTCCATAATGGCGGAAATTATGT
AACTTAACAAAAACATGAAAAACCTCTTCCAGTTTAAGTAAAAATATTGA
TTTTTTGTTTCTTCAGGAAGAAGTTCCCTTACGTAAATTGTTCATTGGAC
GATTACCAGATGACACCAAGCAAGAAGACCTTGATAGTTATTTCGGACAG
TTCGGAGAGTTGACGGACGTCTATATACCGACGCCATACCGAAGTTTTGG
ATTTGTGACGTTCGCTTCTTCAGATGTTGCCAGGACGGTGCTTTTACAAA
GTCAACACACGTTAAAAGTAAAAGCTTCCTCTTTTGCGCTCGGTTGTCGT
TCTTTTTAGGGTCTTAAAGTGAAGAGGGTGACAATAACGAAGATTTAGAA
TTCTCTCCACCTGGCTGAGTTTTTTTTCCAACCTATGAAGAATTTCCTAT
CCTATTGTAGAAGTTTTAACAGTTTTTTCAAATTATAGCTGTGCATGAAT
AGCTCTAGTTCTGCTCGAAGTATTTTTGAACACTTTTTGTATTAACCCCT
TTTATTTCATCATAATCATATTCACTCCTCACGTTTGTTTCAATCAAGGG
TCAACGTATAAACGTGACAAATGCCGAACCAAAAGACGAAAAGGGTGGAA
AATCCTCACGTAGCGGACGTGGTAATTCGCGCTCGTCTTCGCGGCGCCAT
CACGAGCATTCGTTTGATTTCAAAGACATGCGAGAACTGATGTACAACTC
TAGATCTGGCCTACAATATCAACATGGGTCATCGAGGCGTTCTCCGCCAC
GTGAGGTTCTTGATCAAAGACCAAGTATCCCATACACTACTCACCCAGCA
GCAACCAATCCTTACCAACCGAATGACTATAGGACGCTTCAAGCAGGTGG
ATACGGAGCACCACCAGATATGAGACCGGCATACCCACCTACTGGACAGC
AGCAACAATTTGACTCTCGCGAGATGCAATATGGTGCTTACTGGAGTACT
AGCAAGTAATTTGAGGTATGAATAAGTACCCTTTTGTTAGTAAATTCTAA
AATTACTATTTCTGAGATTTGTGTGTTGTTTGAAATTATAATGAGTACTA
CAAACAATTCTGAATAATTAAGTATTTAATATAATAATGATTTATGTAAA
AATTTTGTGTGCGTGTTTTTGTTTCAGTGACGTGTGCAGACTGTGTCCAG
AGGATGCGAAATTTGTGTGAAATAATGGTGATTGATCGAGTGGTGAACCG
AGTTATTATTTAGCGAGTTGATCCGAGTGGAACGGAGTTGCGAGGGGAAC
ATTTATTTTTTATAAAAGAAAAGCAACTTTTCTCTTTACTTTTTTAATTT
ACAAAGCTTCTACAACCAATTTATGGGTGGTCTGCGAGATTAAATGTATA
TAGACTTTGAAATCTTTTACAAAAAATTGTCTTTCGAAAACTAATTTGAA
TTTTTTTTGATTTATACTTATAGTGATTAGAAATAAGAGAAGGGCATAGC
ATATATCTTAGATTGGGGTTATATTTTAATGGAAAGGATGTGGAATCTCT
CTCCCGAAAATGAAGAATGATACAACTTTGATACAACCCTAGAGTAAAGT
AGTCTGAAAACCGTGAAAAATTATGACTGGGCAAAAATTTATTAGTTCTT
GTAGAAGAGAATTACAACCGTCATTTGATATACACTGAAAAATAATGTTT
TGAGAGACTGAATTTTACTGATTTCAAGAATCTTACAGAAAACGCGAAAT
GAAATGTAATTAAGAAAAGTGCTTTGTTTGTTCGATTATATATGGTGGAT
GGAGCAGAGATGAATGAGGGTGCGTGATAAACTGAATGAGGGTACTCTCA
AAGAGATTATCTGACTGACAGTGAAGAGAATGACGTAAGTGTATGCATTT
AATGAGAAATTTTACTGAAATGATATTTAGTTGGTTTGATACAATTTGAC
ATATATATTTTGCCTGTAGAATCTATGGACAAAAGATCTCAAACCGTTTG
ATTATCCCTTTGAATTTTAATACTCTATGCCTATCCCATTATTTTAGATA
CAGCTTCTTGTTAGATCAATTTTATAAGAACAATGAGGGTCAAAAAGCCG
AAAAAATAAGAACAAATCTTAGCCTGGAAGGACTGTATTTTAAAGCCAAT
AAAGAGTCTAGGCATAAAGCCTATAATACCTAAACAGCGGAGCCTAAACA
AAAATCTAGTGGTTCTCGAGTGTGTAAAAGAGTGTAACAGAAATTTTTTT
TCTAGAAGGTATTTTATGGGAATCTCACCTCAAATAAAGAAAGATTTTAA
ATCAATTCACATTCTTTTTTAGAATTTTTGGCTGTTTTATTAACAAAAGG
ACAACACAAGGAAAGGATCTACTTGCTTATCCGACAAAAATTGGTATGCT
GGTATAGATGGTATGCCAATCTTACTAGTCCTATGATCGTATAAATTAGA
TCTCACGAGTTGGAAGTGACTTTAACCTTTTCTGCACGCTGTTTTTTTTT
TGAAAAATACCTTTTTTATCATTTCCCAAGCTTGGAATATAAACTTTAAC
AAGTTCCTTCCATTCTCTTGTTTTAGTCAACATCATAGTCAACATTCGTC
TTAAGATATGTCATTGAACCAAGAATTACTTGTCAGATGAAATCTTATTT
TGGAATCAAGCAAGCATAAGGTGCCAGGCAAAAAGAGGAACGAGTATGTA
CTGCTTGTCAAGCAACCCTTTTTCTATCTACACGTCTCCTATGTAAGTAA
GGGTTGTAAAATTTCCAAATAGTTCTTCTTGAGGGTGAGAACAACTGAAA
TGAACGAGCTTATATCATTCAGAGAATATTGCTTGAAGACTGCTTGACTA
TTTTAAAGATCAAGCTTGATATTCTTTTGAGTGAACCCTTGTTGACAGAT
TATCAATATCATGAGACATCAATTAAAGCTTTAGACATTTAGGACAGTGT
CGTTTTTCGTTTGTTCAATCTGTATCTTCTTACTCAGATTTGAATGCATA
CGATCAAGGTTAACCAGAAGAATATCGTAAATAGACTGTGATATAGTTTA
CTATCTGGATATCCAGGCTAATCAAATCCACAGTAAAACCATTGAGTTTC
AAGCCCGAAGGGCTAGAGGCGAAACTTCAACCCTTCTCAGACAAGAGAAA
TTGAAGCCACTTATTTCCCATCCAAAACGCGCATAGAACATAACATACAC
ATAACATATGCGCATAGTGCCGTAATCATAACGACGGATTGTATCTAACA
GTTCCTTTGTTTTTGGAGGGTTACATCTTTAAAAATCTAGCGATAGATTC
TAGTTTCAATCCGGAGTTTGTGTAAAAACTACGCGCGGACGTTCTGGATG
GGAAATGAATGGTTTCATTTCCCATCCAGGAGTCTCGCTTCTAGCCCTTT
GGGCTTGATACTCAATGAGTAAAACGTCTTTGGATACTGTGCTCTAAATA
ATGTTCTATGATTATAAGGCATGTTTATAATATGAAGGGCAAAACCATTT
GTTTAGTAATATAATTACGAATTAGATATCAAATGATTAGATATTATTTT
GTTTTTCAGCTACTACAATATGACAAAAATAATTTAAAAGAAAGTTAAAA
CTATGAAACCATGGTGTTTTAAATCTGTGTAAAAATGGCATTCGTATTGA
AAAAGCTGGAACGTAAAAAAGAAATCGACGACGTCATAAAAACAACAATA
GACAAAGTGTTGTGTTTACGTTTTGGGCGTGACTCGGACCCAGGCTGTTT
ACATTGTGACGACATTTTGGCGAAAACATGTCATTCTTTATCCAACATGG
CGGACATTTATCTGGTGGATGTTGATCAAGTCGAAGTTTACACTCAATAT
TTTGATATATCTTTAATTCCGGCCACAGTTTTCTTTTTTAACGGACAGCA
CATGAAAGTAGATTACGGAACACAAGATAATACGAAATTTATCGGTCCTT
TCCATTCTAAGCAAGACTTTATTGATCTGATTGAAATAATATACAGAGGT
GCAATGAAAGGAAAATTGATTGTCAACTCTCCAATCGATCCTAAACATAT
TCCAAGATATAATTTATTGTATAATGATATTTGAAGTCATGAAGAATATT
TGTTTTTATCACGTG

Coding sequence (CDS) from alignment at scaffold_243:508705..514869-

>TCONS_00054650 ID=TCONS_00054650|Name=TCONS_00054650|organism=Clytia hemisphaerica|type=CDS|length=6240bp|location=Sequence derived from alignment at scaffold_243:508705..514869- (Clytia hemisphaerica)
GGTCAACGTATAAACGTGACAAATGCCGAACCAAAAGACGAAAAGGGTGG
AAAATCCTCACGTAGCGGACGTGGTAATTCGCGCTCGTCTTCGCGGCGCC
ATCACGAGCATTCGTTTGATTTCAAAGACATGCGAGAACTGATGTACAAC
TCTAGATCTGGCCTACAATATCAACATGGGTCATCGAGGCGTTCTCCGCC
ACGTGAGGTTCTTGATCAAAGACCAAGTATCCCATACACTACTCACCCAG
CAGCAACCAATCCTTACCAACCGAATGACTATAGGACGCTTCAAGCAGGT
GGATACGGAGCACCACCAGATATGAGACCGGCATACCCACCTACTGGACA
GCAGCAACAATTTGACTCTCGCGAGATGCAATATGGTGCTTACTGGAGTA
CTAGCAAGTAAGAAGAAGTTCCCTTACGTAAATTGTTCATTGGACGATTA
CCAGATGACACCAAGCAAGAAGACCTTGATAGTTATTTCGGACAGTTCGG
AGAGTTGACGGACGTCTATATACCGACGCCATACCGAAGTTTTGGATTTG
TGACGTTCGCTTCTTCAGATGTTGCCAGGACGGTGCTTTTACAAAGTCAA
CACACGTTAAAAATCAAGTATGACCCAGTAACAAAGCAATCACGTGGGTT
TGCTTTCATTCGTTTCAAGACAGTAGCTGCAGCACAGAAAACTCTCAAAA
CAACTCACACCATCCTTGGTCGTAGGTGTGAAGTCAGATTACCGAAGAAA
AAGACACCGGGAAACGTAAAATGGTGGAGGAGTCGCCCAGTAGAGAGCCA
GAGGCTAAATTAGTCAAGACTGGATCTGAAAATGAATATCTCTCAGATTT
GATTGTTTTGGGTTTACCTTACAAAGCACGAGAAGACAACGTGAAAGATT
ATTTTCAGCAGTTTGGTGAATTGGCTATGCACGAGATGTACGACGGTGAT
GGTGACTCAACAATGGAACCAACAACAGAAAATACAACAACTCTGGAAAA
ATACCCATGTTTTGTCAAAATTGCCGAAGATGAAACACTAGAAAATTTCA
TTGAATTACCAACTGAAAAATGTGGTAGTATGCTGTTATCTACTATTCAA
GGACAATACCCAAATGCTATTGGTTTGAAGTATAAAAGTCCTTCAGGATC
ATGGAGAGGAGTACGATTATCAGAAAGCATGCTTGATCCACCTTTTGAAG
GTTGGGGAGAAGCCGTCTATTCCATCACACTACCAAAATCAGAGAAAGGG
TCAACGTATAAACGTGACAAATGCCGAACCAAAAGACGAAAAGGGTGGAA
AATCCTCACGTAGCGGACGTGGTAATTCGCGCTCGTCTTCGCGGCGCCAT
CACGAGCATTCGTTTGATTTCAAAGACATGCGAGAACTGATGTACAACTC
TAGATCTGGCCTACAATATCAACATGGGTCATCGAGGCGTTCTCCGCCAC
GTGAGGTTCTTGATCAAAGACCAAGTATCCCATACACTACTCACCCAGCA
GCAACCAATCCTTACCAACCGAATGACTATAGGACGCTTCAAGCAGGTGG
ATACGGAGCACCACCAGATATGAGACCGGCATACCCACCTACTGGACAGC
AGCAACAATTTGACTCTCGCGAGATGCAATATGGTGCTTACTGGAGTACT
AGCAAGTAAGAAGAAGTTCCCTTACGTAAATTGTTCATTGGACGATTACC
AGATGACACCAAGCAAGAAGACCTTGATAGTTATTTCGGACAGTTCGGAG
AGTTGACGGACGTCTATATACCGACGCCATACCGAAGTTTTGGATTTGTG
ACGTTCGCTTCTTCAGATGTTGCCAGGACGGTGCTTTTACAAAGTCAACA
CACGTTAAAAATCAAGTATGACCCAGTAACAAAGCAATCACGTGGGTTTG
CTTTCATTCGTTTCAAGACAGTAGCTGCAGCACAGAAAACTCTCAAAACA
ACTCACACCATCCTTGGTCGTAGGTGTGAAGTCAGATTACCGAAGAAAAA
GACACCGGGAAACGTAAAATGGTGGAGGAGTCGCCCAGTAGAGAGCCAGA
GGCTAAATTAGTCAAGACTGGATCTGAAAATGAATATCTCTCAGATTTGA
TTGTTTTGGGTTTACCTTACAAAGCACGAGAAGACAACGTGAAAGATTAT
TTTCAGCAGTTTGGTGAATTGGCTATGCACGAGATGTACGACGGTGATGG
TGACTCAACAATGGAACCAACAACAGAAAATACAACAACTCTGGAAAAAT
ACCCATGTTTTGTCAAAATTGCCGAAGATGAAACACTAGAAAATTTCATT
GAATTACCAACTGAAAAATGTGGTAGTATGCTGTTATCTACTATTCAAGG
ACAATACCCAAATGCTATTGGTTTGAAGTATAAAAGTCCTTCAGGATCAT
GGAGAGGAGTACGATTATCAGAAAGCATGCTTGATCCACCTTTTGAAGGT
TGGGGAGAAGCCGTCTATTCCATCACACTACCAAAATCAGAGAAAGGGTC
AACGTATAAACGTGACAAATGCCGAACCAAAAGACGAAAAGGGTGGAAAA
TCCTCACGTAGCGGACGTGGTAATTCGCGCTCGTCTTCGCGGCGCCATCA
CGAGCATTCGTTTGATTTCAAAGACATGCGAGAACTGATGTACAACTCTA
GATCTGGCCTACAATATCAACATGGGTCATCGAGGCGTTCTCCGCCACGT
GAGGTTCTTGATCAAAGACCAAGTATCCCATACACTACTCACCCAGCAGC
AACCAATCCTTACCAACCGAATGACTATAGGACGCTTCAAGCAGGTGGAT
ACGGAGCACCACCAGATATGAGACCGGCATACCCACCTACTGGACAGCAG
CAACAATTTGACTCTCGCGAGATGCAATATGGTGCTTACTGGAGTACTAG
CAAGTAAGAAGAAGTTCCCTTACGTAAATTGTTCATTGGACGATTACCAG
ATGACACCAAGCAAGAAGACCTTGATAGTTATTTCGGACAGTTCGGAGAG
TTGACGGACGTCTATATACCGACGCCATACCGAAGTTTTGGATTTGTGAC
GTTCGCTTCTTCAGATGTTGCCAGGACGGTGCTTTTACAAAGTCAACACA
CGTTAAAAATCAAGTATGACCCAGTAACAAAGCAATCACGTGGGTTTGCT
TTCATTCGTTTCAAGACAGTAGCTGCAGCACAGAAAACTCTCAAAACAAC
TCACACCATCCTTGGTCGTAGGTGTGAAGTCAGATTACCGAAGAAAAAGA
CACCGGGAAACGTAAAATGGTGGAGGAGTCGCCCAGTAGAGAGCCAGAGG
CTAAATTAGTCAAGACTGGATCTGAAAATGAATATCTCTCAGATTTGATT
GTTTTGGGTTTACCTTACAAAGCACGAGAAGACAACGTGAAAGATTATTT
TCAGCAGTTTGGTGAATTGGCTATGCACGAGATGTACGACGGTGATGGTG
ACTCAACAATGGAACCAACAACAGAAAATACAACAACTCTGGAAAAATAC
CCATGTTTTGTCAAAATTGCCGAAGATGAAACACTAGAAAATTTCATTGA
ATTACCAACTGAAAAATGTGGTAGTATGCTGTTATCTACTATTCAAGGAC
AATACCCAAATGCTATTGGTTTGAAGTATAAAAGTCCTTCAGGATCATGG
AGAGGAGTACGATTATCAGAAAGCATGCTTGATCCACCTTTTGAAGGTTG
GGGAGAAGCCGTCTATTCCATCACACTACCAAAATCAGAGAAAGGGTCAA
CGTATAAACGTGACAAATGCCGAACCAAAAGACGAAAAGGGTGGAAAATC
CTCACGTAGCGGACGTGGTAATTCGCGCTCGTCTTCGCGGCGCCATCACG
AGCATTCGTTTGATTTCAAAGACATGCGAGAACTGATGTACAACTCTAGA
TCTGGCCTACAATATCAACATGGGTCATCGAGGCGTTCTCCGCCACGTGA
GGTTCTTGATCAAAGACCAAGTATCCCATACACTACTCACCCAGCAGCAA
CCAATCCTTACCAACCGAATGACTATAGGACGCTTCAAGCAGGTGGATAC
GGAGCACCACCAGATATGAGACCGGCATACCCACCTACTGGACAGCAGCA
ACAATTTGACTCTCGCGAGATGCAATATGGTGCTTACTGGAGTACTAGCA
AGTAAGAAGAAGTTCCCTTACGTAAATTGTTCATTGGACGATTACCAGAT
GACACCAAGCAAGAAGACCTTGATAGTTATTTCGGACAGTTCGGAGAGTT
GACGGACGTCTATATACCGACGCCATACCGAAGTTTTGGATTTGTGACGT
TCGCTTCTTCAGATGTTGCCAGGACGGTGCTTTTACAAAGTCAACACACG
TTAAAAATCAAGTATGACCCAGTAACAAAGCAATCACGTGGGTTTGCTTT
CATTCGTTTCAAGACAGTAGCTGCAGCACAGAAAACTCTCAAAACAACTC
ACACCATCCTTGGTCGTAGGTGTGAAGTCAGATTACCGAAGAAAAAGACA
CCGGGAAACGTAAAATGGTGGAGGAGTCGCCCAGTAGAGAGCCAGAGGCT
AAATTAGTCAAGACTGGATCTGAAAATGAATATCTCTCAGATTTGATTGT
TTTGGGTTTACCTTACAAAGCACGAGAAGACAACGTGAAAGATTATTTTC
AGCAGTTTGGTGAATTGGCTATGCACGAGATGTACGACGGTGATGGTGAC
TCAACAATGGAACCAACAACAGAAAATACAACAACTCTGGAAAAATACCC
ATGTTTTGTCAAAATTGCCGAAGATGAAACACTAGAAAATTTCATTGAAT
TACCAACTGAAAAATGTGGTAGTATGCTGTTATCTACTATTCAAGGACAA
TACCCAAATGCTATTGGTTTGAAGTATAAAAGTCCTTCAGGATCATGGAG
AGGAGTACGATTATCAGAAAGCATGCTTGATCCACCTTTTGAAGGTTGGG
GAGAAGCCGTCTATTCCATCACACTACCAAAATCAGAGAAAGGGTCAACG
TATAAACGTGACAAATGCCGAACCAAAAGACGAAAAGGGTGGAAAATCCT
CACGTAGCGGACGTGGTAATTCGCGCTCGTCTTCGCGGCGCCATCACGAG
CATTCGTTTGATTTCAAAGACATGCGAGAACTGATGTACAACTCTAGATC
TGGCCTACAATATCAACATGGGTCATCGAGGCGTTCTCCGCCACGTGAGG
TTCTTGATCAAAGACCAAGTATCCCATACACTACTCACCCAGCAGCAACC
AATCCTTACCAACCGAATGACTATAGGACGCTTCAAGCAGGTGGATACGG
AGCACCACCAGATATGAGACCGGCATACCCACCTACTGGACAGCAGCAAC
AATTTGACTCTCGCGAGATGCAATATGGTGCTTACTGGAGTACTAGCAAG
TAAGAAGAAGTTCCCTTACGTAAATTGTTCATTGGACGATTACCAGATGA
CACCAAGCAAGAAGACCTTGATAGTTATTTCGGACAGTTCGGAGAGTTGA
CGGACGTCTATATACCGACGCCATACCGAAGTTTTGGATTTGTGACGTTC
GCTTCTTCAGATGTTGCCAGGACGGTGCTTTTACAAAGTCAACACACGTT
AAAAATCAAGTATGACCCAGTAACAAAGCAATCACGTGGGTTTGCTTTCA
TTCGTTTCAAGACAGTAGCTGCAGCACAGAAAACTCTCAAAACAACTCAC
ACCATCCTTGGTCGTAGGTGTGAAGTCAGATTACCGAAGAAAAAGACACC
GGGAAACGTAAAATGGTGGAGGAGTCGCCCAGTAGAGAGCCAGAGGCTAA
ATTAGTCAAGACTGGATCTGAAAATGAATATCTCTCAGATTTGATTGTTT
TGGGTTTACCTTACAAAGCACGAGAAGACAACGTGAAAGATTATTTTCAG
CAGTTTGGTGAATTGGCTATGCACGAGATGTACGACGGTGATGGTGACTC
AACAATGGAACCAACAACAGAAAATACAACAACTCTGGAAAAATACCCAT
GTTTTGTCAAAATTGCCGAAGATGAAACACTAGAAAATTTCATTGAATTA
CCAACTGAAAAATGTGGTAGTATGCTGTTATCTACTATTCAAGGACAATA
CCCAAATGCTATTGGTTTGAAGTATAAAAGTCCTTCAGGATCATGGAGAG
GAGTACGATTATCAGAAAGCATGCTTGATCCACCTTTTGAAGGTTGGGGA
GAAGCCGTCTATTCCATCACACTACCAAAATCAGAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034424XLOC_034424Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054650-exon-scaffold_243-1575043694:514449..514869TCONS_00054650-exon-scaffold_243-1575043694:514449..514869Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1575043694:513642..513823TCONS_00054650-exon-scaffold_243-1575043694:513642..513823Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1575043694:513259..513399TCONS_00054650-exon-scaffold_243-1575043694:513259..513399Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1575043694:512503..512703TCONS_00054650-exon-scaffold_243-1575043694:512503..512703Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1575043694:511805..512221TCONS_00054650-exon-scaffold_243-1575043694:511805..512221Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1575043694:510410..510497TCONS_00054650-exon-scaffold_243-1575043694:510410..510497Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1575043694:510078..510243TCONS_00054650-exon-scaffold_243-1575043694:510078..510243Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1575043694:508705..509260TCONS_00054650-exon-scaffold_243-1575043694:508705..509260Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1510915933:514449..514869TCONS_00054650-exon-scaffold_243-1510915933:514449..514869Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1510915933:513642..513823TCONS_00054650-exon-scaffold_243-1510915933:513642..513823Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1510915933:513259..513399TCONS_00054650-exon-scaffold_243-1510915933:513259..513399Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1510915933:512503..512703TCONS_00054650-exon-scaffold_243-1510915933:512503..512703Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1510915933:511805..512221TCONS_00054650-exon-scaffold_243-1510915933:511805..512221Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1510915933:510410..510497TCONS_00054650-exon-scaffold_243-1510915933:510410..510497Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1510915933:510078..510243TCONS_00054650-exon-scaffold_243-1510915933:510078..510243Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1510915933:508705..509260TCONS_00054650-exon-scaffold_243-1510915933:508705..509260Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1491911889:514449..514869TCONS_00054650-exon-scaffold_243-1491911889:514449..514869Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1491911889:513642..513823TCONS_00054650-exon-scaffold_243-1491911889:513642..513823Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1491911889:513259..513399TCONS_00054650-exon-scaffold_243-1491911889:513259..513399Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1491911889:512503..512703TCONS_00054650-exon-scaffold_243-1491911889:512503..512703Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1491911889:511805..512221TCONS_00054650-exon-scaffold_243-1491911889:511805..512221Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1491911889:510410..510497TCONS_00054650-exon-scaffold_243-1491911889:510410..510497Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1491911889:510078..510243TCONS_00054650-exon-scaffold_243-1491911889:510078..510243Clytia hemisphaericaexon
TCONS_00054650-exon-scaffold_243-1491911889:508705..509260TCONS_00054650-exon-scaffold_243-1491911889:508705..509260Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054650-proteinTCONS_00054650-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:508705..514869 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.0313	16.2978	10.6395	11.4807	26.6874	22.1237	31.0122	27.6218	17.2346	16.1672	11.9744	11.6436	9.33928	12.0619	9.89568	10.629	16.5917	14.8059	5.83376	6.75964	10.2595	10.4293	15.1554	14.8395	11.8145	15.0578	9.42621	8.45306	9.28753	9.73818
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00054650 vs. Swiss-Prot (Human)
Match: TXN4B (Thioredoxin-like protein 4B OS=Homo sapiens GN=TXNL4B PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.269e-71
Identity = 109/149 (73.15%), Postives = 125/149 (83.89%), Query Frame = 3 
Query: 1692 MAFVLKKLERKKEIDDVIKTTIDKVLCLRFGRDSDPGCLHCDDILAKTCHSLSNMADIYLVDVDQVEVYTQYFDISLIPATVFFFNGQHMKVDYGTQDNTKFIGPFHSKQDFIDLIEIIYRGAMKGKLIVNSPIDPKHIPRYNLLYNDI 2138
            M+F+L KL  KKE+D  IK+T +KVL LRFGRD DP CL  DDIL+KT   LS MA IYLVDVDQ  VYTQYFDIS IP+TVFFFNGQHMKVDYG+ D+TKF+G F +KQDFIDLIE+IYRGAM+GKLIV SPIDPK+IP+Y+LLY DI
Sbjct:    1 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPIDPKNIPKYDLLYQDI 149
The following BLAST results are available for this feature:
BLAST of TCONS_00054650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TXN4B7.269e-7173.15Thioredoxin-like protein 4B OS=Homo sapiens GN=TXN... [more]
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