E3 ubiquitin-protein ligase TRIM9/6/7 (polypeptide) - C. hemisphaerica

Overview
NameE3 ubiquitin-protein ligase TRIM9/6/7
Unique NameTCONS_00054179-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length688

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054179-protein ID=TCONS_00054179-protein|Name=E3 ubiquitin-protein ligase TRIM9/6/7|organism=Clytia hemisphaerica|type=polypeptide|length=688bp
MESELFCNFCEELFCKPLNLPCGHNICQACAYKCVNETKQQPTQALNEIS
AKSMSLPNRRRKISENTNLCPGNLANDRTDCSSDDSGYLSMHEIHACLHQ
QFHGPMVSIKCPSCAVSFVLDDRGIDCLPLNIILESLVELYKCKNSEIDC
QLCEAVPPNKATSMCEQCRVSYCEGCLKIYHPKRGPLASHTLSAPSNNQC
VLKHRGGVLKCSEHAEENISMYCVLCKMPVCYLCFEEGRHCGHEARALGT
MYKEQKVEMTSRGDRLKDKKKNLNDFIQTLDVHVSKVQENGVDFESRVVA
QIDELIGALEEKKTQLIASIGGRVAGKLDILNKQREECSSNHRMMTGLLA
YVDEVTKEEDPAVFLLISSALSSRLLHTLDTWIGRHGLLPEENSEMELGL
ETSDVLTALNRCDFVKVVTPIRIDKPTTPIIDDTKCEVINNTLTLEWSMN
SSTQIDEFVIEVDDGLNGDFQEVHRTPDPYCTLGGLQFNSTYRSRVRAVN
SAGESTPSDVICMSTPEIAVFSLDSTTSHADINLSNNNRTMNTGSFENRV
AIADVGFSRGQHYWEVTIDRYEGNPDPAIGIAQLDCSKDVILGRDSKAWS
VYVDSTRSWFQHNNAHLYRSEGGIEVGSTIGLYLDLDQCLLSFYCNDEKH
GPIEFPSLEDVDVVYPAFSLNRNVTMTLYSGIKPPAEV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034177XLOC_034177Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054179TCONS_00054179Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003961FN3_dom
IPR000315Znf_B-box
IPR003649Bbox_C
IPR003877SPRY_dom
IPR013783Ig-like_fold
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR001870B30.2/SPRY
IPR013320ConA-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005622 intracellular
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 426..505
e-value: 0.0012
score: 28.2
IPR003961Fibronectin type IIIPFAMPF00041fn3coord: 440..508
e-value: 2.4E-7
score: 30.9
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 425..518
score: 15.432
IPR003961Fibronectin type IIICDDcd00063FN3coord: 424..515
e-value: 1.2513E-9
score: 54.8099
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 423..520
IPR000315B-box-type zinc fingerSMARTSM00336bboxneu5coord: 206..248
e-value: 3.7E-5
score: 33.1
coord: 145..195
e-value: 0.46
score: 10.9
IPR000315B-box-type zinc fingerPFAMPF00643zf-B_boxcoord: 209..245
e-value: 1.7E-6
score: 28.0
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 206..248
score: 10.452
IPR003649B-box, C-terminalSMARTSM00502RAD_5coord: 255..381
e-value: 1.8E-12
score: 57.4
IPR003877SPRY domainSMARTSM00449SPRY_3coord: 559..683
e-value: 3.8E-12
score: 56.3
IPR003877SPRY domainPFAMPF00622SPRYcoord: 561..676
e-value: 5.1E-10
score: 39.4
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 422..520
e-value: 1.0E-14
score: 54.1
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 185..257
e-value: 0.035
score: 13.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..184
e-value: 8.7E-9
score: 34.8
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 22..31
IPR001870B30.2/SPRY domainPROSITEPS50188B302_SPRYcoord: 500..686
score: 18.517
NoneNo IPR availableCDDcd00021BBOXcoord: 210..243
e-value: 0.00540108
score: 34.5704
NoneNo IPR availableCDDcd12889SPRY_PRY_TRIM67_9coord: 512..685
e-value: 8.89163E-90
score: 278.765
NoneNo IPR availableSUPERFAMILY57845B-box zinc-binding domaincoord: 205..265
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 2..40
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 488..685

Blast
[Close]
BLAST of E3 ubiquitin-protein ligase TRIM9/6/7 vs. Swiss-Prot (Human)
Match: TRIM9 (E3 ubiquitin-protein ligase TRIM9 OS=Homo sapiens GN=TRIM9 PE=1 SV=1)

HSP 1 Score: 525.783 bits (1353), Expect = 1.154e-178
Identity = 282/703 (40.11%), Postives = 408/703 (58.04%), Query Frame = 0 
Query:    1 MESELFCNFCEELFCKPLNLPCGHNICQACAYKCVNETKQQPTQALNEISAKSMS----LPNRRRKISENTNLCPGNLAN----DRTDCSSDDSGYLSMHEIHACLHQQFHGPMVS------IKCPSCAVSFVLDDRGIDCLPLNIILESLVELYK-CKNSEIDCQLCEAVPPNKATSMCEQCRVSYCEGCLKIYHPKRGPLASHTLSAPSNNQCVLK-HRGGVLKCSEHAEENISMYCVLCKMPVCYLCFEEGRHCGHEARALGTMYKEQKVEMTSRGDRLKDKKKNLNDFIQTLDVHVSKVQENGVDFESRVVAQIDELIGALEEKKTQLIASIGGRVAGKLDILNKQREECSSNHRMMTGLLAYVDEVTKEEDPAVFLLISSALSSRLLHTLDTWIGRHGLLPEENSEMELGLETSDVLTALNRCDFVKVVTPIRIDKPTTPIIDDTKCEVINNTLTLEWSMN--SSTQIDEFVIEVDDGLNGDFQEVHRTPDPYCTLGGLQFNSTYRSRVRAVNSAGESTPSDVICMSTPEIAVFSLDSTTSHADINLSNNNRTMNTGSFENRVAIADVGFSRGQHYWEVTIDRYEGNPDPAIGIAQLDCSKDVILGRDSKAWSVYVDSTRSWFQHNNAHLYRSEGGIEVGSTIGLYLDLDQCLLSFYCNDEKHGPIEFPSLEDVDVVYPAFSLNRNVTMTLYSGIKPP 685
            ME EL C  C   + +P+ LPC HN+CQACA   + +T +  +   +  +   +S    L   +  +    +   G+         T C    +G                  +        I CP C  S +LDDRG+   P N +LE +++ Y+  K + + CQLCE  P  +AT MCEQC V YC+ C    HP RGPLA H L  P+  +   +     V  C++H  EN SMYCV CKMPVCY C EEG+H  HE +ALG M+K  K +++   + L D+ K   +F+  L   V ++QEN V+FE+ +VAQ D LI AL  +K QL+A +      KL ++  Q   C+   R  TGL+ Y  EV KE DP+ FL IS AL  R+  T D W G+  L P   ++ +L L+ S +L ++++ DFV+V     +  P TPI+   +C   NN+ TL W     S+   D +++E+DDG  G F+EV+   +  CT+ GL FNSTY +RV+A N  G S  S  + + T E+A F+ D  ++H+DI LSN+N T+   S+++RV +   GFS+G HYWE+T+DRY+ +PDPA G+A++D  KDV+LG+D KAW++YVD+ RSWF HNN+H  R+EGGI  G+TIG+ LDL++  L+F+ NDE+ GPI F ++E   + +PA SLNRNV +TL++G+  P
Sbjct:    4 MEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDYDYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAP-KEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQW-GKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQVKASSPV--PATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEVAWFAFDPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFSKGIHYWELTVDRYDNHPDPAFGVARMDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDLNRKNLTFFINDEQQGPIAFDNVE--GLFFPAVSLNRNVQVTLHTGLPVP 700
The following BLAST results are available for this feature:
BLAST of E3 ubiquitin-protein ligase TRIM9/6/7 vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRIM91.154e-17840.11E3 ubiquitin-protein ligase TRIM9 OS=Homo sapiens ... [more]
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