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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054179 ID=TCONS_00054179|Name=TCONS_00054179|organism=Clytia hemisphaerica|type=transcript|length=2705bpRun BLAST on NCBI protein sequence of E3 ubiquitin-protein ligase TRIM9/6/7 >TCONS_00054179-protein ID=TCONS_00054179-protein|Name=E3 ubiquitin-protein ligase TRIM9/6/7|organism=Clytia hemisphaerica|type=polypeptide|length=688bp MESELFCNFCEELFCKPLNLPCGHNICQACAYKCVNETKQQPTQALNEISRun BLAST on NCBI transcript from alignment at scaffold_242:81574..88071+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054179 ID=TCONS_00054179|Name=TCONS_00054179|organism=Clytia hemisphaerica|type=transcript|length=6498bp|location=Sequence derived from alignment at scaffold_242:81574..88071+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_242:81574..88071+ >TCONS_00054179 ID=TCONS_00054179|Name=TCONS_00054179|organism=Clytia hemisphaerica|type=CDS|length=20670bp|location=Sequence derived from alignment at scaffold_242:81574..88071+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054179 vs. Swiss-Prot (Human)
Match: TRIM9 (E3 ubiquitin-protein ligase TRIM9 OS=Homo sapiens GN=TRIM9 PE=1 SV=1) HSP 1 Score: 503.827 bits (1296), Expect = 1.712e-165 Identity = 282/703 (40.11%), Postives = 408/703 (58.04%), Query Frame = 3
Query: 333 MESELFCNFCEELFCKPLNLPCGHNICQACAYKCVNETKQQPTQALNEISAKSMS----LPNRRRKISENTNLCPGNLAN----DRTDCSSDDSGYLSMHEIHACLHQQFHGPMVS------IKCPSCAVSFVLDDRGIDCLPLNIILESLVELYK-CKNSEIDCQLCEAVPPNKATSMCEQCRVSYCEGCLKIYHPKRGPLASHTLSAPSNNQCVLK-HRGGVLKCSEHAEENISMYCVLCKMPVCYLCFEEGRHCGHEARALGTMYKEQKVEMTSRGDRXXXXXXXXXXFIQTLDVHVSKVQENGVDFESRVVAQIDELIGALEEKKTQLIASIGGRVAGKLDILNKQREECSSNHRMMTGLLAYVDEVTKEEDPAVFXXXXXXXXXXXXHTLDTWIGRHGLLPEENSEMELGLETSDVLTALNRCDFVKVVTPIRIDKPTTPIIDDTKCEVINNTLTLEWSMN--SSTQIDEFVIEVDDGLNGDFQEVHRTPDPYCTLGGLQFNSTYRSRVRAVNSAGESTPSDVICMSTPEIAVFSLDSTTSHADINLSNNNRTMNTGSFENRVAIADVGFSRGQHYWEVTIDRYEGNPDPAIGIAQLDCSKDVILGRDSKAWSVYVDSTRSWFQHNNAHLYRSEGGIEVGSTIGLYLDLDQCLLSFYCNDEKHGPIEFPSLEDVDVVYPAFSLNRNVTMTLYSGIKPP 2387
ME EL C C + +P+ LPC HN+CQACA + +T + + + + +S L + + + G+ T C +G + I CP C S +LDDRG+ P N +LE +++ Y+ K + + CQLCE P +AT MCEQC V YC+ C HP RGPLA H L P+ + + V C++H EN SMYCV CKMPVCY C EEG+H HE +ALG M+K K +++ + L D+ K +F+ L V ++QEN V+FE+ +VAQ D LI AL +K QL+A + KL ++ Q C+ R TGL+ Y EV KE DP+ FL IS AL R+ T D W G+ L P ++ +L L+ S +L ++++ DFV+V + P TPI+ +C NN+ TL W S+ D +++E+DDG G F+EV+ + CT+ GL FNSTY +RV+A N G S S + + T E+A F+ D ++H+DI LSN+N T+ S+++RV + GFS+G HYWE+T+DRY+ +PDPA G+A++D KDV+LG+D KAW++YVD+ RSWF HNN+H R+EGGI G+TIG+ LDL++ L+F+ NDE+ GPI F ++E + +PA SLNRNV +TL++G+ P
Sbjct: 4 MEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDYDYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAP-KEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQW-GKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQVKASSPV--PATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEVAWFAFDPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFSKGIHYWELTVDRYDNHPDPAFGVARMDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDLNRKNLTFFINDEQQGPIAFDNVE--GLFFPAVSLNRNVQVTLHTGLPVP 700 The following BLAST results are available for this feature:
BLAST of TCONS_00054179 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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