TCONS_00052618-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052618-protein
Unique NameTCONS_00052618-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length319

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052618-protein ID=TCONS_00052618-protein|Name=TCONS_00052618-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
ITDCDRLPLCCDHCSVADIPRNEMETHLTNCMKVPRPCPFQPIGCEEKKQ
KMDTSIGGYDIEFVNDEHDITCVICLDVLCQPMQAVKCGHRFCKKCMFGL
HRVGKRKYKCPIDRSTITLFRDTGKEREILNSVVRCIHNESGCEWTQELR
ELKNHLNECQFEEIECLNGCGETFQRMNLEKHDTEDCLHRMMTCLFCHDD
YPFHQEQDHNKNCQYFPLCCEFCQNGNIPRCQMENHINQDCGKAPRKCEF
AHLGCDEKIKLQDVQNHNELFQEHHMKLAIQELVRKDERLVTLQKENNRL
VKKNNRLRKENKNQKDEIK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033260XLOC_033260Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052618TCONS_00052618Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR018957Znf_C3HC4_RING-type
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0046872metal ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 276..319
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 68..138
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 72..113
e-value: 1.5E-4
score: 31.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 72..114
score: 11.855
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 71..112
e-value: 2.68754E-4
score: 37.04
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 133..183
e-value: 4.3E-13
score: 48.8
coord: 230..267
e-value: 3.5E-6
score: 26.6
coord: 184..229
e-value: 0.067
score: 12.9
coord: 2..55
e-value: 5.3E-6
score: 26.0
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 66..132
e-value: 2.0E-10
score: 39.7
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 209..267
e-value: 2.0E-11
score: 44.3
coord: 3..51
e-value: 4.3E-8
score: 33.6
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 3..48
score: 10.525
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 209..265
score: 11.479
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 155..207
score: 11.199
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 72..111
e-value: 4.9E-8
score: 32.6
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 88..97
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 133..197

Blast
[Close]
BLAST of TCONS_00052618-protein vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.249e-32
Identity = 87/270 (32.22%), Postives = 139/270 (51.48%), Query Frame = 0 
Query:   56 IGGYDIEFVND-EHDITCVICLDVLCQPMQAVKCGHRFCKKCMFGLHRVGKRKYKCPIDRSTIT---LFRDTGKEREILNSVVRCIHNESGCEWTQELRELKNHLNECQFEEIECLNGCGETFQRMNLEKHDTEDCLHRMMTCLFCHDDYPFHQEQDHNKNCQYFPLCCEFCQNGNIPRCQMENHINQDCGKAPRKCEFAHLGCDEKIKLQDVQNHNELFQEHHMKLAIQEL----VRKDERLV--------TLQKENNRLVKKNNRLRK 309
            I GYD+EF    E    C ICL  L + +Q   CGHRFCK C+  +  +    +KCP+D   +    LF D   +REIL+ +V+C +   GC    ELR L++H   C+F  ++C   C   FQ+ ++  H  +DC  R ++C  C     F  ++ H++NC    + CE+C N  + R QM NH + DC  AP  C F+  GC EK++   +  H +   + HM++  Q +    V  D   +        T+ +   RLV++++++R+
Sbjct:   53 IQGYDVEFDPPLESKYECPICLMALREAVQ-TPCGHRFCKACI--IKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFALMDCPQ-CQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYC-NTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRE 315
The following BLAST results are available for this feature:
BLAST of TCONS_00052618-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF61.249e-3232.22TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
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