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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052618 ID=TCONS_00052618|Name=TCONS_00052618|organism=Clytia hemisphaerica|type=transcript|length=1441bpRun BLAST on NCBI protein sequence of TCONS_00052618-protein >TCONS_00052618-protein ID=TCONS_00052618-protein|Name=TCONS_00052618-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp ITDCDRLPLCCDHCSVADIPRNEMETHLTNCMKVPRPCPFQPIGCEEKKQRun BLAST on NCBI transcript from alignment at scaffold_218:691121..699237+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052618 ID=TCONS_00052618|Name=TCONS_00052618|organism=Clytia hemisphaerica|type=transcript|length=8117bp|location=Sequence derived from alignment at scaffold_218:691121..699237+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_218:691121..699237+ >TCONS_00052618 ID=TCONS_00052618|Name=TCONS_00052618|organism=Clytia hemisphaerica|type=CDS|length=8640bp|location=Sequence derived from alignment at scaffold_218:691121..699237+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052618 vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 3.333e-38 Identity = 136/460 (29.57%), Postives = 206/460 (44.78%), Query Frame = 2
Query: 167 IGGYDIEFVND-EHDITCVICLDVLCQPMQAVKCGHRFCKKCMFGLHRVGKRKYKCPIDRSTIT---LFRDTGKEREILNSVVRCIHNESGCEWTQELRELKNHLNECQFEEIECLNGCGETFQRMNLEKHDTEDCLHRMMTCLFCHDDYPFHQEQDHNKNCQYFPLCCEFCQNGNIPRCQMENHINQDCGKAPRKCEFAHLGCDEKIKLQDVQNHNELFQEHHMKLAIQEL--------------VRK--------DERLVTLQXXXXXXXXXXXXXXXXXXXXXDEIK*MGLSIAELSENSSNE-HKWKIFNFSYEI------SKAMTHFNHFLSKSFYTD-LGYHVQVDLYPNINH----SNVVAIYIKTISGEYDETLRWPIPMTQFYIHLSSCDGCPCIANMHVNSHENMQTH---LALQRP--PHSNTGAGFLNQLSLADL-QKALINDTLILT 1414
I GYD+EF E C ICL L + +Q CGHRFCK C+ + + +KCP+D + LF D +REIL+ +V+C + GC ELR L++H C+F ++C C FQ+ ++ H +DC R ++C C F ++ H++NC + CE+C N + R QM NH + DC AP C F+ GC EK++ + H + + HM++ Q + VR + RLV + L K K I+ + +AE+ N + WKI NF + + H S FYT GY + + L+ + +N +++++ T+ GEYD L WP Q I L+ D A + N E M LA QRP P + G G++ + L L Q+ I D +L
Sbjct: 53 IQGYDVEFDPPLESKYECPICLMALREAVQ-TPCGHRFCKACI--IKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFALMDCPQ-CQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYC-NTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIH-----SPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPF---QGTIRLTILDQSE--APVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLV 495 The following BLAST results are available for this feature:
BLAST of TCONS_00052618 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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