TCONS_00050004-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050004-protein
Unique NameTCONS_00050004-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length232

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050004-protein ID=TCONS_00050004-protein|Name=TCONS_00050004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MARTKQTQQRRRKVASPKSTSTPADRVSSPQSSHASPSSIDSNSATQTLN
MGSSMEGTNGTEQDNTSLIEEILGNNSVQNDTEEASENSNVNEGNSSIAV
KLFEENHSDSDVSKSQKIPVEAPKKNERKLSQRSKILKEIRFFRRTNHKL
VPKLAFCRLVKEIVSRIPGIDETLRIQTLALEALHEAAESFLVRFFEESN
LCAFHSRRVTVMRKDMKFLKVLKYRTGYPKLI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031679XLOC_031679Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050004TCONS_00050004Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000164Histone_H3/CENP-A
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000786 nucleosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000164Histone H3/CENP-ASMARTSM00428h35coord: 122..227
e-value: 7.8E-25
score: 98.5
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 115..217
e-value: 2.6E-22
score: 79.5
NoneNo IPR availableGENE3D1.10.20.10coord: 2..226
e-value: 2.0E-29
score: 101.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..129
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 116..218

Blast
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BLAST of TCONS_00050004-protein vs. Swiss-Prot (Human)
Match: H33 (Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 3.910e-18
Identity = 37/87 (42.53%), Postives = 59/87 (67.82%), Query Frame = 0 
Query:  137 LKEIRFFRRTNHKLVPKLAFCRLVKEIVSRIPGIDETLRIQTLALEALHEAAESFLVRFFEESNLCAFHSRRVTVMRKDMKFLKVLK 223
            L+EIR ++++   L+ KL F RLV+EI          LR Q+ A+ AL EA+E++LV  FE++NLCA H++RVT+M KD++  + ++
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQ---DFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132
The following BLAST results are available for this feature:
BLAST of TCONS_00050004-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
H333.910e-1842.53Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2[more]
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