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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050004 ID=TCONS_00050004|Name=TCONS_00050004|organism=Clytia hemisphaerica|type=transcript|length=1250bp
cattgcagtgtctCTTGGGAGACATTCGATTGTTTATATTTGGAAAAAGA
AGTCGTTCCATTGTGCAACATTCCATAACAAAAATAAACCGAGGAATAAA
AAGCCGTCACGTGTGGAACTGAAAGTTGGTCTCTCGTGGGCGATAGTGTT
GTGAGTTTACACTCGTTTTAATTCTGTTAATTAACCATAAAAGTTTTGCA
ATGTCTCTGGAAATGAAAGAACTCTTTTATCGTGGTTACAATCAAATCGT
GAGTTTCCTGGTCATCATTTCACTTAATCATGGCTCGTACGAAACAAACA
CAACAACGGCGTCGAAAAGTAGCATCACCAAAATCAACTTCAACACCTGC
TGACAGAGTTTCTTCTCCCCAATCATCACACGCATCACCCTCAAGTATCG
ATTCTAACTCGGCCACACAAACACTGAATATGGGATCATCTATGGAAGGT
ACTAATGGTACGGAGCAAGACAACACATCCTTGATTGAAGAAATTCTTGG
AAATAATTCTGTGCAGAATGACACTGAGGAAGCATCAGAGAATTCGAATG
TAAATGAAGGAAACTCAAGCATTGCTGTTAAACTATTCGAAGAAAACCAT
AGTGACTCTGACGTatcaaaaagtcagaaaattccgGTAGAAGCTCCgaa
gaaaaatgaaagAAAATTATCACAAAggtcaaaaattctgaaagagaTAC
GTTTCTTCCGACGTACAAACCACAAATTGGTTCCTAAGTTGGCGTTCTGT
CGGCTGGTCAAAGAAATCGTGTCCAGAATTCCAGGGATTGATGAGACCCT
TCGTATACAAACATTGGCTTTGGAAGCACTCCATGAAGCAGCGGAGAGCT
TTTTGGTTCGATTTTTTGAGGAATCTAATTTATGTGCTTTTCATAGCCGA
CGAGTTACTGTTATGCGGAAAGATATGAAGTTTTTGAAAGTACTCAAATA
TAGGACTGGTTATCCTAAGCTTATTTGAGGGATTGTGTCGGttgttttct
ttgtcttttgatAAAGTTGTTGGAAATATATTTGTAAGTGGATTTGTCGT
GTTTTTATCTTTGCTTAGTTTTTTCCGTGGTTTGTTGAAAGAATTCGATA
TTTGGGAATCAATTAATTTCAAACCTTCTTTAAGGTCAAATTTATTTTGT
ACTTTTCGTTTTTGTATTAAACTTTTACAAAATAGTTTTATATATTtcgc
atttttttcaaaataatattaTCACGATTAAAAACGAAAATTGATCTTCG Run BLAST on NCBI protein sequence of TCONS_00050004-protein >TCONS_00050004-protein ID=TCONS_00050004-protein|Name=TCONS_00050004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MARTKQTQQRRRKVASPKSTSTPADRVSSPQSSHASPSSIDSNSATQTLN
MGSSMEGTNGTEQDNTSLIEEILGNNSVQNDTEEASENSNVNEGNSSIAV
KLFEENHSDSDVSKSQKIPVEAPKKNERKLSQRSKILKEIRFFRRTNHKL
VPKLAFCRLVKEIVSRIPGIDETLRIQTLALEALHEAAESFLVRFFEESN
LCAFHSRRVTVMRKDMKFLKVLKYRTGYPKLI Run BLAST on NCBI transcript from alignment at scaffold_167:1847755..1853731+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050004 ID=TCONS_00050004|Name=TCONS_00050004|organism=Clytia hemisphaerica|type=transcript|length=5977bp|location=Sequence derived from alignment at scaffold_167:1847755..1853731+ (Clytia hemisphaerica)
cattgcagtgtctCTTGGGAGACATTCGATTGTTTATATTTGGAAAAAGA
AGTCGTTCCATTGTGCAACATTCCATAACAAAAATAAACCGAGGAATAAA
AAGCCGTCACGTGTGGAACTGAAAGTTGGTCTCTCGTGGGCGATAGTGTT
GTGAGTTTACACTCGTTTTAATTCTGTTAATTAACCATAAAAGTTTTGCA
ATGTCTCTGGAAATGAAAGAACTCTTTTATCGTGGTTACAATCAAATCGT
AAGTTTTGTGTACTGCATTTATACTGAAAACAAGTTCTGACCACtgactt
ataaaaaaacattttaattcgattttttgataaatttttggttttaggca
tggcgttctaaagttaaagggaattctttttatgatattttgagattttt
gccTTCTTGATTAAAGGCATTAGATTTGTTTTGGgagttttttttatgtt
tggGATTTTTGGAGAGCCCTATATTGTACTATATTTTTAATCGATCCTGC
TCGGTTGTTGATTACGCCATCAatccagaagcagccaccgacctaaaatt
tgcaaatatctgttctgatttgccagctggaaggatttccacgaaattaa
gaacagttccttgTTTTCCAggcgagaaatttttacttcagaacagttat
attttttcagctaggaggtaaaaaaactttcagaacagatacgagattac
caggcgattgattttacgcgagttaactgttcttatctaccagggctgac
aaaatcttataagaacagatcgccAAATTCCAGCTTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcagaccacttttt
tccagcagacttttttctttagttctgtaagaacagaccgccatatccag
ctggaacgtgccttcagaacagatattttgaagtcctccttcggtggatg
ctttcgtcaatcgaacgtaattgaacGTGATCGAACACAATCGAGGAATT
GACCAAGCCATGAATTGACtcttcgattgcgattcgattacGTTTCATTA
TTTTCACTAGTCGTAATTTTATTGCTCCATTAAGGTGCAAtttcgatttt
gaaaaacttttgaaatgttTATCCCAATTGATTTAAATTTTGCAAGTGTG
CACCAAATATAAAttggcatctttggtgaaaattttggCATCATGGATGA
AGTCATCACCACATGATGAAAATACCGAAAATCAAGAGAttttttactta
attttttttgctcaatttttgtgacacaaCTCCACATGACATGTATTTTT
GGGgcattttttggcactttgactGACACTTTTTGCTTCAACCAGTCCTA
GGATACTGTATCTAGTGACTGAAAAATACTTTTGACAAGTGTTAGTTAGG
TATTGATAATACATTCTTGCAGTTAGAATTTCAGCAACATCAGACGAGTG
GTTATGCTGAAAATGAGCATTTTGTGTCAAATacggaccggtctgtaaaa
tatcaacctcaggtgaatttgaaaaattggcgGGAGAagtaatctcataa
cagatcatctcCATTCTGCGCACACCATACACACTTTGCTCTGCTCTAAA
GTGATACGGCGAATGTGacgatctgacctggttgttcagccaaaacaatc
acaagcgcttttgtttgaaaacgaaagtgaaagcgaTTGGGTTCTTGGCT
TGTTTTCgtgcgattgttttgctttagtcaATCACcgcgctcaaaagctc
atttaatattcaccCTAAATCTGGCCAACCTGAGCAGATTTTCTTACGGA
GCCAtggcctttagagtgaatacgtgcTAGCGCGGAGTAAACATAATTTG
CTGCGGAAGAAGTAGTTTCAGTGAATTGAATTCTGTTTATTCGAATAACA
CACCCCATTGAAACTTTGAATAACTTTGAAAATGCTTTACTTTACTTGTT
ACTTTTCAAGGTGAGTTTCCTGGTCATCATTTCACTTAATCATGGCTCGT
ACGAAACAAACACAACAACGGCGTCGAAAAGTAGCATCACCAAAATCAAC
TTCAACACCTGCTGACAGAGTTTCTTCTCCCCAATCATCACACGCATCAC
CCTCAAGTATCGATTCTAACTCGGCCACACAAACACTGAATATGGGATCA
TCTATGGAAGGTACTAATGGTACGGAGCAAGACAACACATCCTTGATTGA
AGAAATTCTTGGAAATAATTCTGTGCAGAATGACACTGAGGAAGGTTAAT
AATAAAGCTTATTTTGACCTGTTTTGACACCTCGGTTTCTGTGACCCGGT
GAgaattagtctgaatcgcagacctctacaaaacctcaGGTAGTATAGGG
AGAATAAATCCGTTAGTGGATNtgaatcgcagacctctacaaaacctcaG
GTAGTATAGGGAGAATaaatccgttagtggatacTAGCAGGATATTTCAG
CCGATAGACATTGTcgatagtcagaaaattgattttagtccTGTTTTAGA
AATAGGAATATCAAAACGTAGGCAAAACTAATTATACCATCTCAANGCTA
GCAGGATATTTCAGCCAATAGACATTGTcgatagtcagaaaattgatttt
agtccTGTTTTAGAAATAGGAATATCAAAACGTAGGCAAAACTAATTATA
CCATCTCAAACAGTCAATTTAGATAAAATTTTAAAGCAGTTTTTTATTTA
TACTTATAGCATCAGAGAATTCGAATGTAAATGAAGGAAACTCAAGCATT
GCTGTTAAACTATTCGAAGAAAACCATAGTGACTCTGACGTatcaaaaag
tcagaaaattccgGTAGAAGCTCCgaagaaaaatgaaaggtaatccaatg
tcttattttttttcggTTTATCTGGCCATGGACAGGGTCAAGGCTATAAT
ACCTTGGTAGCGACTGGTGGATTTAAGACAGTAGAGCAactacgtcggaa
acatgcgaaggagtgcaacgctcgtcaaaagaaaatgaaattacatttac
aaatctcttcctctgataagtgcgacatggtctaaaaccgcctatgccTT
GTAGGGGGAATATTGTATAAATATTTCAGGCTTGCCTACGTTCTTATTTT
Nggggggggggggtcggtagtaaaatctcagacatatatgagtagtaaaa
ggatttttacgaatttttacataccacaaCCCAGattcttggaagaggta
ttttacttccctggtagtaaaagcttttgggacaatttgtcatggagacc
acctattttttggttgcttttctgactgattttgcaaaaaaagctaaaaa
atgatgatttctgTGACACAGTTTTcacgtagtgcaaaaattaatgtttt
tcccttagaattaaagtcttttatattgacaaaaaatttcgagaattttt
tgtttgcagcaaacaactttccaacagaaaattttttcaaattataaaaa
ttttcagattttttcagaaNNNNNNNNNNNNNNNNtttgcagcaaacaac
tttccaacagaaaattttttcaaattataaaaattttcagattttttcag
aaaagtcatccagaaaattaaaagaattacaaaaaatacctaaaatttgc
taattttaccagttttaactacccgggtagtaaatttttttcaacacttt
aacacatagataccacccattttagtatttaactaccctgggtagtaaat
tttttttttcgatttttcgtcacaccaccaccgtagtaaacgtcattatg
tctgagattttactaccgaccccccccccccttttttNGCTTATTTTGAC
CTGTTTTGACACCTCGGTTTCTGTGACCCGGTGAgaattagtctgaatcg
cagacctctacaaaacctcaGGTAGTATAGGGAGAATaaatccgttagtg
gatacTAGCAGGATATTTCAGCCAATAGACATTGTcgatagtcagaaaat
tgattttagtccTGTTTTAGAAATAGGAATATCAAAACGTAGGCAAAACT
AATTATACCATCTCAAACAGTCAATTTAGATAAAATTTTAAAGCAGTTTT
TTATTTATACTTATAGCATCAGAGAATTCGAATGTAAATGAAGGAAACTC
AAGCATTGCTGTTAAACTATTCGAAGAAAACCATAGTGACTCTGACGTat
caaaaagtcagaaaattccgGTAGAAGCTCCgaagaaaaatgaaaggtaa
tccaatgtcttattttttttcggTTTATCTGGCCATGGACAGGGTCAAGG
CTATAATACCTTGGTAGCGACTGGTGGATTTAAGACAGTAGAGCAactac
gtcggaaacatgcgaaggagtgcaacgctcgtcaaaagaaaatgaaatta
catttacaaatctcttCCTCTGATAAGTgcgacatggtctaaaaccgcct
atgccTTGTAGGGGGAATATTGTATAAATATTTCAGGCTTGCCTACGTTC
TTATTTTAGTTTGGCATGTTGAGGGTTAAATTATTATAATCTAGTTATTC
TTTCAAGGATAAAGAAGTATTGAAGAGGACCTTGAAAAACTTTGTACCGT
TTATTAAGCCTTTCCAAGCTCAACATTGTTCtagaatgttttttattttc
tggcatTTCTGAATCtgagcctcaatgttcttataaaattgttattataa
aaaaaacgatTGTGTGAAGAAATTACTTAACCGAGACCAGTAGTTTCATC
TCTGATTTCTGGCAgctaattttaaatttgatgccGACTGGCTACTCGTT
CGAACTATTTTCTACCGCTCGTATGTCCTCGTGTTTCAGAAAATTATCAC
AAAggtcaaaaattctgaaagagaTACGTTTCTTCCGACGTACAAACCAC
AAATTGGTTCCTAAGTTGGCGTTCTGTCGGCTGGTCAAAGAAATCGTGTC
CAGAATTCCAGGGATTGATGAGACCCTTCGTATACAAACATTGGCTTTGG
AAGCACTCCATGAAGCAGCGGAGAGCTTTTTGGTTCGATTTTTTGAGGAA
TCTAATTTATGTGCTTTTCATAGCCGACGAGTTACTGTTATGCGGAAAGA
TATGAAGTTTTTGAAAGTACTCAAATATAGGACTGGTTATCCTAAGCTTA
TTTGAGGGATTGTGTCGGttgttttctttgtcttttgatAAAGTTGTTGG
AAATATATTTGTAAGTGGATTTGTCGTGTTTTTATCTTTGCTTAGTTTTT
TCCGTGGTTTGTTGAAAGAATTCGATATTTGGGAATCAATTAATTTCAAA
CCTTCTTTAAGGTCAAATTTATTTTGTACTTTTCGTTTTTGTATTAAACT
TTTACAAAATAGTTTTATATATTtcgcatttttttcaaaataatattaTC
ACGATTAAAAACGAAAATTGATCTTCG Coding sequence (CDS) from alignment at scaffold_167:1847755..1853731+ >TCONS_00050004 ID=TCONS_00050004|Name=TCONS_00050004|organism=Clytia hemisphaerica|type=CDS|length=2097bp|location=Sequence derived from alignment at scaffold_167:1847755..1853731+ (Clytia hemisphaerica)
ATGGCTCGTACGAAACAAACACAACAACGGCGTCGAAAAGTAGCATCACC
AAAATCAACTTCAACACCTGCTGACAGAGTTTCTTCTCCCCAATCATCAC
ACGCATCACCCTCAAGTATCGATTCTAACTCGGCCACACAAACACTGAAT
ATGGGATCATCTATGGAAGGTACTAATGGTACGGAGCAAGACAACACATC
CTTGATTGAAGAAATTCTTGGAAATAATTCTGTGCAGAATGACACTGAGG
AAGCATCAGAGAATTCGAATGTAAATGAAGGAAACTCAAGCATTGCTGTT
AAACTATTCGAAGAAAACCATAGTGACTCTGACGTatcaaaaagtcagaa
aattccgGTAGAAGCTCCgaagaaaaatgaaagAAAATTATCACAAAggt
caaaaattctgaaagagaTACGTTTCTTCCGACGTACAAACCACAAATTG
GTTCCTAAGTTGGCGTTCTGTCGGCTGGTCAAAGAAATCGTGTCCAGAAT
TCCAGGGATTGATGAGACCCTTCGTATACAAACATTGGCTTTGGAAGCAC
TCCATGAAGCAGCGGAGAGCTTTTTGGTTCGATTTTTTGAGGAATCTAAT
TTATGTGCTTTTCATAGCCGACGAGTTACTGTTATGCGGAAAGATATGAA
GTTTTTGAAAGTACTCAAATATAGGACTGGTTATCCTAAGCTTATTTGAA
TGGCTCGTACGAAACAAACACAACAACGGCGTCGAAAAGTAGCATCACCA
AAATCAACTTCAACACCTGCTGACAGAGTTTCTTCTCCCCAATCATCACA
CGCATCACCCTCAAGTATCGATTCTAACTCGGCCACACAAACACTGAATA
TGGGATCATCTATGGAAGGTACTAATGGTACGGAGCAAGACAACACATCC
TTGATTGAAGAAATTCTTGGAAATAATTCTGTGCAGAATGACACTGAGGA
AGCATCAGAGAATTCGAATGTAAATGAAGGAAACTCAAGCATTGCTGTTA
AACTATTCGAAGAAAACCATAGTGACTCTGACGTatcaaaaagtcagaaa
attccgGTAGAAGCTCCgaagaaaaatgaaagAAAATTATCACAAAggtc
aaaaattctgaaagagaTACGTTTCTTCCGACGTACAAACCACAAATTGG
TTCCTAAGTTGGCGTTCTGTCGGCTGGTCAAAGAAATCGTGTCCAGAATT
CCAGGGATTGATGAGACCCTTCGTATACAAACATTGGCTTTGGAAGCACT
CCATGAAGCAGCGGAGAGCTTTTTGGTTCGATTTTTTGAGGAATCTAATT
TATGTGCTTTTCATAGCCGACGAGTTACTGTTATGCGGAAAGATATGAAG
TTTTTGAAAGTACTCAAATATAGGACTGGTTATCCTAAGCTTATTTGAAT
GGCTCGTACGAAACAAACACAACAACGGCGTCGAAAAGTAGCATCACCAA
AATCAACTTCAACACCTGCTGACAGAGTTTCTTCTCCCCAATCATCACAC
GCATCACCCTCAAGTATCGATTCTAACTCGGCCACACAAACACTGAATAT
GGGATCATCTATGGAAGGTACTAATGGTACGGAGCAAGACAACACATCCT
TGATTGAAGAAATTCTTGGAAATAATTCTGTGCAGAATGACACTGAGGAA
GCATCAGAGAATTCGAATGTAAATGAAGGAAACTCAAGCATTGCTGTTAA
ACTATTCGAAGAAAACCATAGTGACTCTGACGTatcaaaaagtcagaaaa
ttccgGTAGAAGCTCCgaagaaaaatgaaagAAAATTATCACAAAggtca
aaaattctgaaagagaTACGTTTCTTCCGACGTACAAACCACAAATTGGT
TCCTAAGTTGGCGTTCTGTCGGCTGGTCAAAGAAATCGTGTCCAGAATTC
CAGGGATTGATGAGACCCTTCGTATACAAACATTGGCTTTGGAAGCACTC
CATGAAGCAGCGGAGAGCTTTTTGGTTCGATTTTTTGAGGAATCTAATTT
ATGTGCTTTTCATAGCCGACGAGTTACTGTTATGCGGAAAGATATGAAGT
TTTTGAAAGTACTCAAATATAGGACTGGTTATCCTAAGCTTATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050004-exon-scaffold_167-1491911889:1847755..1848002 | TCONS_00050004-exon-scaffold_167-1491911889:1847755..1848002 | Clytia hemisphaerica | exon |
| TCONS_00050004-exon-scaffold_167-1510915933:1847755..1848002 | TCONS_00050004-exon-scaffold_167-1510915933:1847755..1848002 | Clytia hemisphaerica | exon |
| TCONS_00050004-exon-scaffold_167-1575043694:1847755..1848002 | TCONS_00050004-exon-scaffold_167-1575043694:1847755..1848002 | Clytia hemisphaerica | exon |
| TCONS_00050004-exon-scaffold_167-1491911889:1850315..1850598 | TCONS_00050004-exon-scaffold_167-1491911889:1850315..1850598 | Clytia hemisphaerica | exon |
| TCONS_00050004-exon-scaffold_167-1510915933:1850315..1850598 | TCONS_00050004-exon-scaffold_167-1510915933:1850315..1850598 | Clytia hemisphaerica | exon |
| TCONS_00050004-exon-scaffold_167-1575043694:1850315..1850598 | TCONS_00050004-exon-scaffold_167-1575043694:1850315..1850598 | Clytia hemisphaerica | exon |
| TCONS_00050004-exon-scaffold_167-1491911889:1852421..1852550 | TCONS_00050004-exon-scaffold_167-1491911889:1852421..1852550 | Clytia hemisphaerica | exon |
| TCONS_00050004-exon-scaffold_167-1510915933:1852421..1852550 | TCONS_00050004-exon-scaffold_167-1510915933:1852421..1852550 | Clytia hemisphaerica | exon |
| TCONS_00050004-exon-scaffold_167-1575043694:1852421..1852550 | TCONS_00050004-exon-scaffold_167-1575043694:1852421..1852550 | Clytia hemisphaerica | exon |
| TCONS_00050004-exon-scaffold_167-1491911889:1853144..1853731 | TCONS_00050004-exon-scaffold_167-1491911889:1853144..1853731 | Clytia hemisphaerica | exon |
| TCONS_00050004-exon-scaffold_167-1510915933:1853144..1853731 | TCONS_00050004-exon-scaffold_167-1510915933:1853144..1853731 | Clytia hemisphaerica | exon |
| TCONS_00050004-exon-scaffold_167-1575043694:1853144..1853731 | TCONS_00050004-exon-scaffold_167-1575043694:1853144..1853731 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1847755..1853731 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0000786 | nucleosome |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0046982 | protein heterodimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0000786 |
nucleosome |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0046982 |
protein heterodimerization activity |
Blast
The following BLAST results are available for this feature:
|
