TCONS_00049704-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049704-protein
Unique NameTCONS_00049704-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length138

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049704-protein ID=TCONS_00049704-protein|Name=TCONS_00049704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MSKFDGTKGPPDINGMVSLKVDNLTYRTSMADLEKYFKKYGDVGDIYIPR
DRNTQESRGFAFVRFYEERDAEDAMDGMDGKVIDGREIRVAMARYGRPAN
QYDPRRQGRSGGRGSRDHRDRDNRDRDRDRSRRSPRRR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031517XLOC_031517Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049704TCONS_00049704Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 18..91
e-value: 8.6E-25
score: 98.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 20..89
e-value: 1.3E-21
score: 76.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 17..95
score: 18.973
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 13..124
NoneNo IPR availableGENE3D3.30.70.330coord: 7..137
e-value: 4.8E-27
score: 94.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..138
NoneNo IPR availableCDDcd12311RRM_SRSF2_SRSF8coord: 19..91
e-value: 2.44448E-38
score: 125.486

Blast
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BLAST of TCONS_00049704-protein vs. Swiss-Prot (Human)
Match: SRSF2 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 141.739 bits (356), Expect = 2.750e-43
Identity = 67/93 (72.04%), Postives = 79/93 (84.95%), Query Frame = 0 
Query:   10 PPDINGMVSLKVDNLTYRTSMADLEKYFKKYGDVGDIYIPRDRNTQESRGFAFVRFYEERDAEDAMDGMDGKVIDGREIRVAMARYGRPANQY 102
            PPD+ GM SLKVDNLTYRTS   L + F+KYG VGD+YIPRDR T+ESRGFAFVRF+++RDAEDAMD MDG V+DGRE+RV MARYGRP + +
Sbjct:    7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSH 99
The following BLAST results are available for this feature:
BLAST of TCONS_00049704-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRSF22.750e-4372.04Serine/arginine-rich splicing factor 2 OS=Homo sap... [more]
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