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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049704 ID=TCONS_00049704|Name=TCONS_00049704|organism=Clytia hemisphaerica|type=transcript|length=726bp
aaaacaaagacaatcGCTAGTCCCAGTCTCGAATTTTCGTCGCGCATTGG
CCATTCTTAGTTGTTGGCAGATCTTTTCACGGATTCAATCTGGCAGGAGT
GCAGGGAATAAAATAGCTTGAATTTTCCACATATCGTTGTATTCCTTGAG
AGCCACAATGAGTAAATTTGATGGGACCAAGGGACCTCCAGATATCAATG
GAATGGTCAGTCTCAAAGTTGACAATTTAACATACAGGACCAGTATGGCT
GATCTGGAAAAATACTTCAAGAAATATGGAGATGTTGGAGACATTTACAT
CCCCAGAGACCGGAATACACAGGAGTCACGTGGTTTTGCTTTTGTACGCT
TTTATGAAGAACGAGATGCTGAAGATGCAATGGATGGCATGGATGGAAAG
GTCATTGATGGACGTGAAATTCGAGTAGCCATGGCTAGGTACGGTCGACC
AGCAAACCAATATGATCCAAGACGACAAGGACGCAGTGGAGGGCGTGGTA
GTCGTGATCACAGAGATCGAGACAACCGTGACCGAGATCGAGATCGATCA
AGACGATCCCCTCGCAGAAGGTGAGCTTTTAATTCAGGGATACCCCTTCT
ATTCGATCATATTTTAAGTGAAGCCCTctgaagcatttttaaaaaactaa
agCTTCATACGTTTGACAATCATTAATTATTGCTATTTgatgaatgtttg
aaaaaccaCTTGACAGGAATTTTCGC Run BLAST on NCBI protein sequence of TCONS_00049704-protein >TCONS_00049704-protein ID=TCONS_00049704-protein|Name=TCONS_00049704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MSKFDGTKGPPDINGMVSLKVDNLTYRTSMADLEKYFKKYGDVGDIYIPR
DRNTQESRGFAFVRFYEERDAEDAMDGMDGKVIDGREIRVAMARYGRPAN
QYDPRRQGRSGGRGSRDHRDRDNRDRDRDRSRRSPRRR Run BLAST on NCBI transcript from alignment at scaffold_165:179583..185626- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049704 ID=TCONS_00049704|Name=TCONS_00049704|organism=Clytia hemisphaerica|type=transcript|length=6044bp|location=Sequence derived from alignment at scaffold_165:179583..185626- (Clytia hemisphaerica)
AAAACAAAGACAATCGCTAGTCCCAGTCTCGAATTTTCGTCGCGCATTGG
CCATTCTTAGTTGTTGGCAGATCTTTTCACGGATTCAATCTGGCAGGAGT
GCAGGGAATAAAATAGCTTGAATTTTCCACATATCGTTGTATTCCTTGAG
AGCCACAATGAGTAAATTTGATGGGACCAAGGGACCTCCAGATATCAATG
GAATGGTCAGTCTCAAAGTTGACAATTTAACATACAGGACCAGTATGGCT
GATCTGGAAAAGTAAGTCTAAATTTGTCATTCAGTTAAAATTGATCATTT
ATCGTAATCCTCTTTACTTACCCTCTGGCTTTTTAGAATCAGAGACAGTG
GTATAAAAAGAGTCTTTTCTGAGTAAGAATTTATCAATGCTGTACTGTAT
GTATGTATATTGGAAATCTTGGCTGATTTGTTGTGTTGAGTCAATTTTTC
ATCCTCAGATTAAAAACTTTGCTATTAGCGTAGACCTTTTCGCCTTTCCA
TCCGCCATATTGAATTGTATGCAAAAATTATGGTAGCCAAATTGCCGTGG
TGAAATTCCCTTAGAAAGTATGCAAAACATATGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGA
TATCAAGGTGTTTGACGTTTTTGGGTGTGGGTGGGTGGGTCAGCTTTTAA
AACGTCAATTGACGTTCTTCTAACCTAGAATCGATTTGTGACTGACCCCG
CCCTAAGGAGGCGATTCTATCTTTGAAAAGGTGGTTTTTTGTGGTTTGAA
AATGGAATAACTTTGGAACTACTTAACCAATTTTAACAAATGACCCCTCA
TTTTCCTCACAAAGGTAAGGACTTTCAAATAAAATTAGTTTGGTTTTCAA
AATTTGAGGGGAAAATTTTGGCCTGACCACCCTATTTTAGTTGTACGCCG
AAGATCTTCGGCGTTAGTTACACGAAATCCATACTGGGTAATGGGCCATT
CCAGAAAATTTTTGTTACCCCCCATCGGACGACGTGCATTTTTAAATATT
TTCTAGCCTCGGAAATAATTTTTTTTTTCAGTGGTGGTCAGAAAGTTCGA
TAAAAATCCATGTACTTTTGCAAAATGCATTGGAATTCCACTCTTTTTGT
CTGTTTTAATTGAATTGCCTTGGAAATTCATACATTTTCTACTCTTGCCT
TGGAAATTTTGAATTTTGGTGAAAACTTGTGCCCTCCGGAAATCCTGTGT
CGTCCGCCCCCCTGTTACAGACAAATTCTGGAATGCCCCAATCTTGTAGA
AGAAAGATTAAATTTGCTTCTTTTTAAAACTAGAAATAATCAAATTCGCC
CATCTCTTAGAACTAGCAGTAGCACTTCAAAAACCATAACATCACCCACG
AAGGTACAAAAATAATCCTTATTCGGCTGACGGTAAATTATTCTCCTGGG
AATAGAATCGCCAAACAATCAAATCAAAACATCGATCTGAATGCGTGACG
TCGAGTCATAATTACTGCTTTCAGTTTGCGTGTTTTGCGTGTGTACTCCG
TCTTCGTGGAATTTTTAATGGCATGAAAACAGAATATGCTATGTCTTCAA
GAACAAATTTCTAAAAGGCTTTTGTTGTTCGGTAAATACTTCTTTTTGGA
TTAAGAAATTCCATCTTTTATTGTTCTAATGATTATAAAATTTATTTATA
AGATGCTTTGTTGTCTTTTTAATCTTTGTGTAAACTTGCATATGTTTTGC
ATATTTTCCAACTAAATCCAACCACAGCTTTTTCGTTCCTATATTTTTGC
ATACAATTCAAGATGGCAGATGGAAAGGCGAAAAGGTCTATAGTCGTTTG
AAAGAACACGACGATCTTACTAATCACTCCAGAAGAATATTGGTAATTTC
CAAAGCACTTTGAAAAATTGACTGGATTACAGAGTGTTTTTTTTTACCTG
AAAATTCCTGTTGTCCACCCCCTATATAAAATTTTTTTTTGGCTTGAAAT
CTAAAATTAAAGTAAATCAGCCTGACTCTGAATCCAGTTATCTTGATTGA
TATAGGAGTTTTAGTCTATACTGTTTGTTATTCAATAGACTATTGTGTTC
TCCCAAACCACAATTTCAAGGCCAGTAAATATCTCAAAACTATTGAAAAT
CTGTTCAAATTTTGATATTTTTTCATTTGATGTTATCAATAAAAATCTCA
TTGGTTGTAACTTGTATCCATTTTAGCAACAAGCCATTTTAAGCTAATTT
GGTTTGCAAAAAGTGCAAGTCTATAATTTAAACTAATAAACTGTCTGGAA
TCTGTGAGATCTTTGACTTGAGCAAAATAAATCTTCTCAAAAATTTCAAA
ACTGCTTCTTTTTAGCAAGAAAAATAATCAGTAAAATTAAATTTAAAAAA
AGGCAAGCTTTACTTAATGTTTGTAAAGGTTCTTTGACAAAAAACTTTCG
AATTTTTTATCGGCATTGGGCCGATAAGCTTCAGACCCCCTCCCCCTTGC
TCTTATCAGCCAAAATTTTCGAAACCAATTTTTACATCTTCGAAAACACA
ATTTTTTCCAATCATGTCCGCCATTGCGTTGGTCTTGCCTTCCCACCTGT
CTTCGTTGAGTTTTTATCTATTTGCACCAACATTAAGTTTGTTCATACCC
GCATTGATATTGTTAATCAAAACGAAAGTTAAAAAGACCCGATGAAGTTG
CAACATTTTGAAGGAAACGGCAGCACGCTGTCCAATTAAAAAAAAGTTTT
TTATCAAAGCTAATTCAAAACTGTATTTTTAAAGTTGCGAATTTGTGCGC
AAAGGTGAAAGCAAGTGAAATTGTATGCTTTCAGTTGAGTTTGTGGACGA
AATCAGAAAGAAATTGGTAGTTAGACCCCCCCCCACCCCCTTATCAGCCC
AATACCGATAAAAAATTTGAAAGTTTTTTTTGAGGATCCTTAAAACGTTG
ACCCAAATTTTATTGCAGTGATACTTTTCTGGAAATAAAGGAAATGCTAC
CAGTCATTTTTCAGGCAAAAGCCCAATTATGGACTGAAAAATCAAATATT
TATGTTTTTGATTTACTTTGCCACATTTTCATTAGAAATAGAAAATCTAG
CTAATTTTTTATATTCCTTCTCTAGTTGCAGTTTTCACCAGCAGTCATTT
CAAAGTTTAATAAGAAAGGGGTTATGAAAGCTGATTGCAGAAATGCTGAT
GAGAGAGCAGCTACTCCTGTCTGCAGTTTTCTATGGTTGCAGGTGCAAAG
CAGATTCCGTTCATCTCAACTAAATTTCTTTAATGCTGTTATTACCATTA
TGAAAACCTGTTCAGTGCCTTAAGTTTGCTGATTCCTGTTTTGATAATCC
CTCCACAATAGTTTCCTGGTTTGAATGTGGGTGAACAAGATTGATTGCAG
TAAACTGCTGTCCAGTACTCAAACCACCATGTCTGGTTGAAAGCAGTTTA
CAAGGTCTCTCTTCGACATCAAGCAGAAATAAGTTCAAAATCCAAGCCGC
CTTTTGTGTTGGACTGCTGCTCCTGTCCATTTTTGTATTTCCAAACCAGT
CCAGTTACAAGTGATGCGGTTGCTGCTTTAATTGCACTTTTACTACACTG
GGTAAATACTGCTATCTTTAAACCTAACTGCAAAGGCTGTCATTTTGGAA
TAATCGAATCAAGGTATTCAGGCTCTGCAAATTTTAGGCTGAAAACATTG
GGCACTGTACTAACTTAGGAGTGAGTCTGGCTTGATTGGCTTGGGCCAAT
CGACTGTAGCTCGAATTAAACGAATCAAAACTATTTTGGCTTTCCCCAGG
CCTTGCCTATTTAATTGATACTTAAAAACTACTCCCTAAAAGTTAAAACT
AGACACTTGATATGTATTTTTGAGAAGATAGATTTTACTGCTTTATTTAT
CATTAACATTGAGAAAATTTTATGATTGAACTTTTAGATACTTCAAGAAA
TATGGAGATGTTGGAGACATTTACATCCCCAGAGACCGGAATACACAGGA
GTCACGTGGTTTTGCTTTTGTACGCTTTTATGAAGAACGAGATGCTGAAG
ATGCAATGGATGGCATGGATGGAAAGGTAGTTCATATGACCTTATTTTTG
CTGTCCTATAAAAGTTTCTTTATTNTTGATAATCCCTCCACAATAGTTTC
CTGGTTTGAATGTGGGTGAACAAGATTGATTGCAGTAAACTGCTGTCCAG
TACTCAAACCACCATGTCTGGTTGAAAGCAGTTTACAAGGTCTCTCTTCG
ACATCAAGCAGAAATAAGTTCAAAATCCAAGCCGCCTTTTGTGTTGGACT
GCTGCTCCTGTCCATTTTTGTATTTCCAAACCAGTCCAGTTACAAGTGAT
GCGGTTGCTGCTTTAATTGCACTTTTACTACACTGGGTAAATACTGCTAT
CTTTAAACCTAACTGCAAAGGCTGTCATTTGGGAATAATCGAATCAAGGT
ATTCAGGCTCTGCAAATTTTAGGCTGAAAACATTGGACACTGTACTAACT
TAGGAGTGAGTCTGGCTTGATTGGCTTGGGCCAATCGACTGTAGCTCGAA
TTAAACGAATCAAAACTATTTTGGCTTTCCTCAGGCCTTGCCTATTTAAT
TGATACTTAAAAACTACTCCCTAAAAGTTAAAATTAGACACTTGATATGT
ATTTTTGAGAAGATAGATTTTACTGCTTTATTTATCATTAACATTGAGAA
AATTTTATGATTAAACTTTTAGATACTTCAAGAAATATGGAGATGTTGGA
GACATTTACATCCCCAGAGACCGGAATACACAGGAGTCACGTGGTTTTGC
TTTTGTACGCTTTTATGAAGAACGAGATGCTGAAGATGCAATGGATGGCA
TGGATGGAAAGGTAGTTCATATGACCTTATTTTTGCTGTGCTATAAAAGT
TTCTTTATTAATATTATCGTTAGCGGATGCATTTCCCTCGATTTCTATAA
AACCAATCAGTGGAGAAGTGCGACTCTTCTTGTAATGGTTGATGTACATT
TCTAACTTCTGCTTTAAGGTCATTGATGGACGTGAAATTCGAGTAGCCAT
GGCTAGGTACGGTCGACCAGCAAACCAATATGATCCAAGACGACAAGGAC
GCAGTGGAGGGCGTGGTAGTCGTGATCACAGAGATCGAGACAACCGTGAC
CGAGATCGAGATCGATCAAGACGATCCCCTCGCAGAAGGTGAGCTTTTAA
TTCAGGGATACCCCTTCTATTCGATCATATTTTAAGTGAAGCCCTCTGAA
GCATTTTTAAAAAACTAAAGCTTCATACGTTTGACAATCATTAATTATTG
CTATTTGATGAATGTTTGAAAAACCACTTGACAGGAATTTTCGC Coding sequence (CDS) from alignment at scaffold_165:179583..185626- >TCONS_00049704 ID=TCONS_00049704|Name=TCONS_00049704|organism=Clytia hemisphaerica|type=CDS|length=1668bp|location=Sequence derived from alignment at scaffold_165:179583..185626- (Clytia hemisphaerica)
GTCATTGATGGACGTGAAATTCGAGTAGCCATGGCTAGGTACGGTCGACC
AGCAAACCAATATGATCCAAGACGACAAGGACGCAGTGGAGGGCGTGGTA
GTCGTGATCACAGAGATCGAGACAACCGTGACCGAGATCGAGATCGATCA
AGACGATCCCCTCGCAGAAGGTGAATCCCCAGAGACCGGAATACACAGGA
GTCACGTGGTTTTGCTTTTGTACGCTTTTATGAAGAACGAGATGCTGAAG
ATGCAATGGATGGCATGGATGGAAAGATACTTCAAGAAATATGGAGATGT
TGGAGACATTTACATGAGTAAATTTGATGGGACCAAGGGACCTCCAGATA
TCAATGGAATGGTCAGTCTCAAAGTTGACAATTTAACATACAGGACCAGT
ATGGCTGATCTGGAAAAGTCATTGATGGACGTGAAATTCGAGTAGCCATG
GCTAGGTACGGTCGACCAGCAAACCAATATGATCCAAGACGACAAGGACG
CAGTGGAGGGCGTGGTAGTCGTGATCACAGAGATCGAGACAACCGTGACC
GAGATCGAGATCGATCAAGACGATCCCCTCGCAGAAGGTGAATCCCCAGA
GACCGGAATACACAGGAGTCACGTGGTTTTGCTTTTGTACGCTTTTATGA
AGAACGAGATGCTGAAGATGCAATGGATGGCATGGATGGAAAGATACTTC
AAGAAATATGGAGATGTTGGAGACATTTACATGAGTAAATTTGATGGGAC
CAAGGGACCTCCAGATATCAATGGAATGGTCAGTCTCAAAGTTGACAATT
TAACATACAGGACCAGTATGGCTGATCTGGAAAAGTCATTGATGGACGTG
AAATTCGAGTAGCCATGGCTAGGTACGGTCGACCAGCAAACCAATATGAT
CCAAGACGACAAGGACGCAGTGGAGGGCGTGGTAGTCGTGATCACAGAGA
TCGAGACAACCGTGACCGAGATCGAGATCGATCAAGACGATCCCCTCGCA
GAAGGTGAATCCCCAGAGACCGGAATACACAGGAGTCACGTGGTTTTGCT
TTTGTACGCTTTTATGAAGAACGAGATGCTGAAGATGCAATGGATGGCAT
GGATGGAAAGATACTTCAAGAAATATGGAGATGTTGGAGACATTTACATG
AGTAAATTTGATGGGACCAAGGGACCTCCAGATATCAATGGAATGGTCAG
TCTCAAAGTTGACAATTTAACATACAGGACCAGTATGGCTGATCTGGAAA
AGTCATTGATGGACGTGAAATTCGAGTAGCCATGGCTAGGTACGGTCGAC
CAGCAAACCAATATGATCCAAGACGACAAGGACGCAGTGGAGGGCGTGGT
AGTCGTGATCACAGAGATCGAGACAACCGTGACCGAGATCGAGATCGATC
AAGACGATCCCCTCGCAGAAGGTGAATCCCCAGAGACCGGAATACACAGG
AGTCACGTGGTTTTGCTTTTGTACGCTTTTATGAAGAACGAGATGCTGAA
GATGCAATGGATGGCATGGATGGAAAGATACTTCAAGAAATATGGAGATG
TTGGAGACATTTACATGAGTAAATTTGATGGGACCAAGGGACCTCCAGAT
ATCAATGGAATGGTCAGTCTCAAAGTTGACAATTTAACATACAGGACCAG
TATGGCTGATCTGGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049704-exon-scaffold_165-1575043694:185366..185626 | TCONS_00049704-exon-scaffold_165-1575043694:185366..185626 | Clytia hemisphaerica | exon |
| TCONS_00049704-exon-scaffold_165-1575043694:180953..180989 | TCONS_00049704-exon-scaffold_165-1575043694:180953..180989 | Clytia hemisphaerica | exon |
| TCONS_00049704-exon-scaffold_165-1575043694:180066..180167 | TCONS_00049704-exon-scaffold_165-1575043694:180066..180167 | Clytia hemisphaerica | exon |
| TCONS_00049704-exon-scaffold_165-1575043694:179583..179908 | TCONS_00049704-exon-scaffold_165-1575043694:179583..179908 | Clytia hemisphaerica | exon |
| TCONS_00049704-exon-scaffold_165-1510915933:185366..185626 | TCONS_00049704-exon-scaffold_165-1510915933:185366..185626 | Clytia hemisphaerica | exon |
| TCONS_00049704-exon-scaffold_165-1510915933:180953..180989 | TCONS_00049704-exon-scaffold_165-1510915933:180953..180989 | Clytia hemisphaerica | exon |
| TCONS_00049704-exon-scaffold_165-1510915933:180066..180167 | TCONS_00049704-exon-scaffold_165-1510915933:180066..180167 | Clytia hemisphaerica | exon |
| TCONS_00049704-exon-scaffold_165-1510915933:179583..179908 | TCONS_00049704-exon-scaffold_165-1510915933:179583..179908 | Clytia hemisphaerica | exon |
| TCONS_00049704-exon-scaffold_165-1491911889:185366..185626 | TCONS_00049704-exon-scaffold_165-1491911889:185366..185626 | Clytia hemisphaerica | exon |
| TCONS_00049704-exon-scaffold_165-1491911889:180953..180989 | TCONS_00049704-exon-scaffold_165-1491911889:180953..180989 | Clytia hemisphaerica | exon |
| TCONS_00049704-exon-scaffold_165-1491911889:180066..180167 | TCONS_00049704-exon-scaffold_165-1491911889:180066..180167 | Clytia hemisphaerica | exon |
| TCONS_00049704-exon-scaffold_165-1491911889:179583..179908 | TCONS_00049704-exon-scaffold_165-1491911889:179583..179908 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_165 | supercontig | scaffold_165:179583..185626 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000504 | RRM_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00049704 vs. Swiss-Prot (Human)
Match: SRSF2 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4) HSP 1 Score: 143.665 bits (361), Expect = 2.237e-41 Identity = 67/95 (70.53%), Postives = 80/95 (84.21%), Query Frame = 2
Query: 179 KGPPDINGMVSLKVDNLTYRTSMADLEKYFKKYGDVGDIYIPRDRNTQESRGFAFVRFYEERDAEDAMDGMDGKVIDGREIRVAMARYGRPANQY 463
+ PPD+ GM SLKVDNLTYRTS L + F+KYG VGD+YIPRDR T+ESRGFAFVRF+++RDAEDAMD MDG V+DGRE+RV MARYGRP + +
Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSH 99
The following BLAST results are available for this feature:
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