TCONS_00049550-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049550-protein
Unique NameTCONS_00049550-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length630

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049550-protein ID=TCONS_00049550-protein|Name=TCONS_00049550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=630bp
MTLAIEDAVDEILRSKSPINSPQAETPPSPALPPPPPPPPPPPPPPMLPG
MPGAPPPPPLPNSPRDKADGPTFTKSSAKLPLLHWQTISRPTENSIFTQL
STDSMEKKLNFEEIDNLFQIKATPVSTNSSKNKSLHRDAVLQKLTNQVTI
LNSNKARNLLIARKRINLPENELQTVLDKLDIVQLPPECAELLVKFTPTT
DERAALSKNQDYEQLAEAEKFMVQLMKVERLESKLNTMVFMGNFDEIFRS
VVPQIEAVISASVSIATSDKLKKFLELILAVGNYINGSRKGFTKGFKLES
LIKLDEVKSNGQKKISLLQYLVTIARSRFPDLHTFHEEIDVAPTLNISME
TLRGDVQQLRKGLDITKNEREKQPDNYALHNFYNRSIVKVQQVSERHRKM
EDQYKEVCALFCENPKTTEPSEFFNSFHKFIQAYKNAEKELERQLNEEQS
VKKAKRIKAQDDKIRKSHAANARMAAEVVRRRHSEVVDQNDNFMMMKSRP
MSSALSLQISKHDRLSSSYPRSTSMEQLLDKCDGNELLNNPIFKRTSKLF
SESDPDILDDRKGQKISGNDIDDPDDRERSATLPVRNKQTKEEVFRPRSF
QIESPASPVRPLNGHFXRFKLNRLLRLYAL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031426XLOC_031426Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049550TCONS_00049550Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015425FH2_Formin
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 427..458
NoneNo IPR availableCOILSCoilCoilcoord: 349..369
NoneNo IPR availableSUPERFAMILY101447Formin homology 2 domain (FH2 domain)coord: 83..450
coord: 36..44
IPR015425Formin, FH2 domainSMARTSM00498it6_sourcecoord: 70..527
e-value: 2.6E-67
score: 239.6
IPR015425Formin, FH2 domainPFAMPF02181FH2coord: 75..435
e-value: 1.3E-76
score: 258.1
IPR015425Formin, FH2 domainPROSITEPS51444FH2coord: 70..460
score: 59.061

Blast
[Close]
BLAST of TCONS_00049550-protein vs. Swiss-Prot (Human)
Match: FMNL1 (Formin-like protein 1 OS=Homo sapiens GN=FMNL1 PE=1 SV=3)

HSP 1 Score: 222.631 bits (566), Expect = 5.757e-62
Identity = 130/399 (32.58%), Postives = 242/399 (60.65%), Query Frame = 0 
Query:   63 SPRDKADGPTFTKSSAKLPLLHWQTISRPTE--NSIFTQLSTDSMEKKLNFEEIDNLFQIKATPVSTNSSKNKSLHRDAVLQKLTNQVTILNSNKARNLLIARKRINLPENELQTVLDKLDIVQLPPECAELLVKFTPTTDERAALSK----NQDYEQLAEAEKFMVQLMKVERLESKLNTMVFMGNFDEIFRSVVPQIEAVISASVSIATSDKLKKFLELILAVGNYINGSRKGFTKGFKLESLIKLDEVKSNGQKKISLLQYLVTIARSRFPDLHTFHEEID-VAPTLNISMETLRGDVQQLRKGLDITKNEREKQPDNYALHNFYNRSIVKVQQVSERHRKMEDQYKEVCALFCENPKTTEPSEFFNSFHKFIQAYKNAEKELERQLNEEQSVKKA 454
             P  KA  P  TK   ++PLL+W  + +P++   ++FT+L+ + + ++L+  + +  F+ K+   S + S  KS       QK  ++ T++ +N+A+NL I  ++ NL    +   ++  D+  L  +  ELL++F PT  ER+ +++     +  E+L+E ++FM+   ++ RL  ++ T+ F+GNF +  + ++PQ+ A+I+AS+SI +SDKL++ LE++LA GNY+N S++G   GF+L+SL  L E+KS  +K+ +LL YLV +   ++P L  FH ++  +    ++S++++  DV+ L++GL++T+ E  +Q D   L  F   +   + ++    +  ++ ++ V   F ENPKTT P  FF+ F +FI+AYK AE+E+E Q  +E + ++A
Sbjct:  627 GPGVKAKKPIQTK--FRMPLLNWVAL-KPSQITGTVFTELNDEKVLQELDMSDFEEQFKTKSQGPSLDLSALKS----KAAQKAPSKATLIEANRAKNLAITLRKGNLGAERICQAIEAYDLQALGLDFLELLMRFLPTEYERSLITRFEREQRPMEELSEEDRFMLCFSRIPRLPERMTTLTFLGNFPDTAQLLMPQLNAIIAASMSIKSSDKLRQILEIVLAFGNYMNSSKRGAAYGFRLQSLDALLEMKSTDRKQ-TLLHYLVKVIAEKYPQLTGFHSDLHFLDKAGSVSLDSVLADVRSLQRGLELTQREFVRQDDCMVLKEFLRANSPTMDKLLADSKTAQEAFESVVEYFGENPKTTSPGLFFSLFSRFIKAYKKAEQEVE-QWKKEAAAQEA 1016
The following BLAST results are available for this feature:
BLAST of TCONS_00049550-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FMNL15.757e-6232.58Formin-like protein 1 OS=Homo sapiens GN=FMNL1 PE=... [more]
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