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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049550 ID=TCONS_00049550|Name=TCONS_00049550|organism=Clytia hemisphaerica|type=transcript|length=2213bpRun BLAST on NCBI protein sequence of TCONS_00049550-protein >TCONS_00049550-protein ID=TCONS_00049550-protein|Name=TCONS_00049550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=630bp MTLAIEDAVDEILRSKSPINSPQAETPPSPALPPPPPPPPPPPPPPMLPGRun BLAST on NCBI transcript from alignment at scaffold_160:216374..224429- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049550 ID=TCONS_00049550|Name=TCONS_00049550|organism=Clytia hemisphaerica|type=transcript|length=8056bp|location=Sequence derived from alignment at scaffold_160:216374..224429- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_160:216374..224429- >TCONS_00049550 ID=TCONS_00049550|Name=TCONS_00049550|organism=Clytia hemisphaerica|type=CDS|length=20823bp|location=Sequence derived from alignment at scaffold_160:216374..224429- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00049550 vs. Swiss-Prot (Human)
Match: FMNL1 (Formin-like protein 1 OS=Homo sapiens GN=FMNL1 PE=1 SV=3) HSP 1 Score: 207.994 bits (528), Expect = 5.649e-56 Identity = 129/395 (32.66%), Postives = 241/395 (61.01%), Query Frame = 3
Query: 306 KADGPTFTKSSAKLPLLHWQTISRPTE--NSIFTQLSTDSMEKKLNFEEIDNLFQIKATPVSTNSSKNKSLHRDAVLQKLTNQVTILNSNKARNLLIARKRINLPENELQTVLDKLDIVQLPPECAELLVKFTPTTDERAALSK----NQDYEQLAEAEKFMVQLMKVERLESKLNTMVFMGNFDEIFRSVVPQIEXXXXXXXXXXTSDKLKKFLELILAVGNYINGSRKGFTKGFKLESLIKLDEVKSNGQKKISLLQYLVTIARSRFPDLHTFHEEID-VAPTLNISMETLRGDVQQLRKGLDITKNEREKQPDNYALHNFYNRSIVKVQQVSERHRKMEDQYKEVCALFCENPKTTEPSEFFNSFHKFIQAYKNAEKELERQLNEEQSVKKA 1469
KA P TK ++PLL+W + +P++ ++FT+L+ + + ++L+ + + F+ K+ S + S KS QK ++ T++ +N+A+NL I ++ NL + ++ D+ L + ELL++F PT ER+ +++ + E+L+E ++FM+ ++ RL ++ T+ F+GNF + + ++PQ+ A+I+AS+SI +SDKL++ LE++LA GNY+N S++G GF+L+SL L E+KS +K+ +LL YLV + ++P L FH ++ + ++S++++ DV+ L++GL++T+ E +Q D L F + + ++ + ++ ++ V F ENPKTT P FF+ F +FI+AYK AE+E+E Q +E + ++A
Sbjct: 631 KAKKPIQTK--FRMPLLNWVAL-KPSQITGTVFTELNDEKVLQELDMSDFEEQFKTKSQGPSLDLSALKS----KAAQKAPSKATLIEANRAKNLAITLRKGNLGAERICQAIEAYDLQALGLDFLELLMRFLPTEYERSLITRFEREQRPMEELSEEDRFMLCFSRIPRLPERMTTLTFLGNFPDTAQLLMPQLNAIIAASMSIKSSDKLRQILEIVLAFGNYMNSSKRGAAYGFRLQSLDALLEMKSTDRKQ-TLLHYLVKVIAEKYPQLTGFHSDLHFLDKAGSVSLDSVLADVRSLQRGLELTQREFVRQDDCMVLKEFLRANSPTMDKLLADSKTAQEAFESVVEYFGENPKTTSPGLFFSLFSRFIKAYKKAEQEVE-QWKKEAAAQEA 1016 The following BLAST results are available for this feature:
BLAST of TCONS_00049550 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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