TCONS_00049539-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00049539-protein
Unique Name	TCONS_00049539-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1416

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00049539-protein ID=TCONS_00049539-protein|Name=TCONS_00049539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1416bp
MEILRDNSRKEFKKFPGALSRWFFWYHNETFTVGNQRKLTKNDIYKIPEE
YSSQTMVDVFKRLWSNEIQQKQERNKKPNFLSAVFRFLVPKLLFPLMLMT
FSTSLRIASTFFLKFVVEAILTGSTTEGYYWATALAFGMLGQWLCHHQFF
YRSEVVGNNIKTGILGLIYQKALKLSTGSLGTLSTGHVVTLVTTDTRKIQ
ESIKILPFIPLAPVSLVVVSVILINQFGVAALTGIALLVIFIPLQIVAGK
FFAKMRFKVVKNTDKRVSTMNEIITSMQVTKMYTWEDSYAQLINDVRKKE
TSSIFTALVVRGINYAFYSSSPYIIGFVIFATFYGLGGQLTLSSVFQTIS
LLFASRFEICFMFPTGIQCLNEMKVACHRIQNILMYDEMSSEETSQQSTS
SSSDDQKHGSEENIVHFKNVTASWDKNAADPILQSVDLKCDRENCLVMVV
GPVGSGKSSLLMAAMNELHVKKGEIKVQGSTAFTTQQPWIFSGTVRQNIL
FGREYKKDWYQTVIKACGMHTDIRRFKHGDLTLVGEKGVTLSGGQKARVA
LARAVYSDKDIYYLDDPLSAVDTKVGRYIFENCIQKLLKDKLVILVTHQV
QFLKNASDILCLQYGNVCEGSLNDFQNMGIDLGSIMDTESVVDRSSPSKN
IGKDGGGEGFLESNDDDDNVLDEKELLLEDGVDDSQDQKLNNKLKALPDH
LTSNLDVVGNMSAMSLYSNNEIEDVLKEQDNQDETMASGSLSFKVVRNYF
YKGLGCFLTFLLPVFLVSGQVVLTFTDYYMAQWARSEQERNTNQTITSPF
YYQQNADYNIIIFGSIVLFAVLLDIVRIIYFFYAMVRCNRHLHDAMFTSI
LKAPIYFFNTHPVGQILNRFSRDTHLVDEELPWILCDALRILLLLLAIVT
INCFSVPYILIIVIPLFVIFVKLRTYYMNIGREVKRLDAVARSPLYTHLS
ATLSGISTIRAFGLQDRVTNDFHDCTNYQAESWLMFISSVRWFGMRLDFI
SLVYSMVAIFSPIILLDLSGEMDPNIASVSITYALTLSGLFQFCVRQSAE
AENLMVSVERLMEYADIENEPDNGDLKADKNWPEKGRITASHTSFRYHQS
LDNVLKKISFVINGREKIGVVGRTGAGKSTLLNLLFRMGVTDGRVIIDDV
DISRLKLKDLRSSLSIIPQDPVLFNGTLRKNLDPFSKYTDDQIWQALTEV
QLSETVGDLPNKLETEVAESGSNFSVGERQLLCLARALLKRNKILVIDEA
TANVDFETDSLIQETIRMKFQDCTVLTIAHRLNTIIDSDRVMVMDEGEIV
EFDLPYSLLQTSDGHLRKLVDQTGESEAKRLESLAREAMSAKLDDSIMAD
NDVEEQKNGPSNDVLKMADEEMTNPLQDGSENEKEVLVKAKSLETPEVVI
TGPDGAKEPLLSDTGV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031424	XLOC_031424	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00049539	TCONS_00049539	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003593	AAA+_ATPase
IPR011527	ABC1_TM_dom
IPR003439	ABC_transporter-like
IPR017871	ABC_transporter_CS
IPR027417	P-loop_NTPase

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0042626	ATPase activity, coupled to transmembrane movement of substances
GO:0016887	ATPase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006810	transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0042626	ATPase activity, coupled to transmembrane movement of substances
molecular_function	GO:0005524	ATP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 1114..1298 e-value: 3.4E-12 score: 56.5 coord: 443..619 e-value: 4.1E-7 score: 39.6
None	No IPR available	GENE3D	3.40.50.300		coord: 398..639 e-value: 4.2E-49 score: 166.7
None	No IPR available	GENE3D	1.20.1560.10		coord: 68..385 e-value: 1.2E-45 score: 155.4
None	No IPR available	GENE3D	3.40.50.300		coord: 1073..1323 e-value: 6.7E-64 score: 215.1
None	No IPR available	GENE3D	1.20.1560.10		coord: 720..1072 e-value: 1.8E-57 score: 194.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 643..666
None	No IPR available	CDD	cd03244	ABCC_MRP_domain2	coord: 1086..1305 e-value: 4.69287E-122 score: 379.915
None	No IPR available	CDD	cd03250	ABCC_MRP_domain1	coord: 415..615 e-value: 5.61335E-97 score: 309.014
IPR011527	ABC transporter type 1, transmembrane domain	PFAM	PF00664	ABC_membrane	coord: 97..352 e-value: 2.9E-24 score: 86.1 coord: 760..1039 e-value: 3.4E-36 score: 125.2
IPR011527	ABC transporter type 1, transmembrane domain	PROSITE	PS50929	ABC_TM1F	coord: 98..353 score: 27.806
IPR011527	ABC transporter type 1, transmembrane domain	PROSITE	PS50929	ABC_TM1F	coord: 760..1053 score: 30.221
IPR011527	ABC transporter type 1, transmembrane domain	SUPERFAMILY	90123	ABC transporter transmembrane region	coord: 762..1071
IPR011527	ABC transporter type 1, transmembrane domain	SUPERFAMILY	90123	ABC transporter transmembrane region	coord: 81..365
IPR003439	ABC transporter-like	PFAM	PF00005	ABC_tran	coord: 435..568 e-value: 2.8E-15 score: 56.9 coord: 1105..1252 e-value: 2.5E-29 score: 102.4
IPR003439	ABC transporter-like	PROSITE	PS50893	ABC_TRANSPORTER_2	coord: 415..638 score: 19.048
IPR003439	ABC transporter-like	PROSITE	PS50893	ABC_TRANSPORTER_2	coord: 1088..1321 score: 15.1
IPR017871	ABC transporter, conserved site	PROSITE	PS00211	ABC_TRANSPORTER_1	coord: 1224..1238
IPR017871	ABC transporter, conserved site	PROSITE	PS00211	ABC_TRANSPORTER_1	coord: 541..555
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 412..619
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1081..1315

Blast

[Close]

BLAST of TCONS_00049539-protein vs. Swiss-Prot (Human)
Match: MRP4 (Multidrug resistance-associated protein 4 OS=Homo sapiens GN=ABCC4 PE=1 SV=3)

HSP 1 Score: 994.571 bits (2570), Expect = 0.000e+0
Identity = 519/1316 (39.44%), Postives = 795/1316 (60.41%), Query Frame = 0

Query:   20 SRWFFWYHNETFTVGNQRKLTKNDIYKIPEEYSSQTMVDVFKRLWSNEIQQKQERNKKPNFLSAVFRFLVPKLLFPLMLMTFSTSLRIASTFFLKFVV------EAILTGSTTEGYYWATALAFGMLGQWLCHHQFFYRSEVVGNNIKTGILGLIYQKALKLSTGSLGTLSTGHVVTLVTTDTRKIQESIKILPFIPLAPVSLVVVSVILINQFGVAALTGIALLVIFIPLQIVAGKFFAKMRFKVVKNTDKRVSTMNEIITSMQVTKMYTWEDSYAQLINDVRKKETSSIFTALVVRGINYAFYSSSPYIIGFVIFATFYGLGGQLTLSSVFQTISLLFASRFEICFMFPTGIQCLNEMKVACHRIQNILMYDEMSSEETSQQSTSSSSDDQKHGSEENIVHFKNVTASWDKNAADPILQSVDLKCDRENCLVMVVGPVGSGKSSLLMAAMNELHVKKGEIKVQGSTAFTTQQPWIFSGTVRQNILFGREYKKDWYQTVIKACGMHTDIRRFKHGDLTLVGEKGVTLSGGQKARVALARAVYSDKDIYYLDDPLSAVDTKVGRYIFENCIQKLLKDKLVILVTHQVQFLKNASDILCLQYGNVCE-GSLNDFQNMGIDLGSIMDTESVVDRSSPSKNIGKDGGGEGFLESNDDDDNVLDEKELL--LEDGVDDSQDQKLNNKLKALPDHLTSNLDVVGNMSAMSLYSNNEIEDVLKEQDNQDETMASGSLSFKVVRNYFYKGLGCFLTFLLPVFLVSGQVVLTFTDYYMAQWARSEQERNTNQTITSPFYYQQNADYNIIIFGSIVLFAVLLDIVRIIYFFYAMVRCNRHLHDAMFTSILKAPIYFFNTHPVGQILNRFSRDTHLVDEELPWILCDALRILLLLLAIVTINCFSVPYILIIVIPLFVIFVKLRTYYMNIGREVKRLDAVARSPLYTHLSATLSGISTIRAFGLQDRVTNDFHDCTNYQAESWLMFISSVRWFGMRLDFISLVYSMVAIFSPIILLDLSGEMDPNIASVSITYALTLSGLFQFCVRQSAEAENLMVSVERLMEYADIENE-PDNGDLKADKNWPEKGRITASHTSFRYHQSLDNVLKKISFVINGREKIGVVGRTGAGKSTLLNLLFRMGVTDGRVIIDDVDISRLKLKDLRSSLSIIPQDPVLFNGTLRKNLDPFSKYTDDQIWQALTEVQLSETVGDLPNKLETEVAESGSNFSVGERQLLCLARALLKRNKILVIDEATANVDFETDSLIQETIRMKFQDCTVLTIAHRLNTIIDSDRVMVMDEGEIVEFDLPYSLLQTSDGHLRKLVDQTGE 1325
            SR FFW+ N  F +G++R+L ++D+Y +  E  SQ + +  +  W  E+ + +   +KP+   A+ +      L   +      S ++    FL  ++      + + + +    Y +AT L F  L   + HH +FY  +  G  ++  +  +IY+KAL+LS  ++G  +TG +V L++ D  K  +    L F+   P+  + V+ +L  + G++ L G+A+L+I +PLQ   GK F+ +R K    TD R+ TMNE+IT +++ KMY WE S++ LI ++RKKE S I  +  +RG+N A + S+  II FV F T+  LG  +T S VF  ++L  A R  +   FP+ I+ ++E  V+  RIQ  L+ DE+S     Q++    SD +K      +VH ++ TA WDK +  P LQ +     R   L+ VVGPVG+GKSSLL A + EL    G + V G  A+ +QQPW+FSGT+R NILFG++Y+K+ Y+ VIKAC +  D++  + GDLT++G++G TLSGGQKARV LARAVY D DIY LDDPLSAVD +V R++FE CI ++L +K+ ILVTHQ+Q+LK AS IL L+ G + + G+  +F   GID GS++  ++      P        G          + +V  ++     L+DG  +SQD              T N+ V  +                      +E  + G + F+  +NYF  G    +   L +   + QV     D++++ WA  +   N           + + ++ + I+  + +  VL  I R +  FY +V  ++ LH+ MF SILKAP+ FF+ +P+G+ILNRFS+D   +D+ LP    D ++ LL ++ +V++    +P+I I ++PL +IF+ LR Y++   R+VKRL++  RSP+++HLS++L G+ TIRA+  ++R    F    +  +E+W +F+++ RWF +RLD I  ++ ++  F  +IL   +  +D     ++++YALTL G+FQ+CVRQSAE EN+M+SVER++EY D+E E P     +    WP +G I   + +F Y      VLK ++ +I  +EK+G+VGRTGAGKS+L++ LFR+   +G++ ID +  + + L DLR  +SIIPQ+PVLF GT+RKNLDPF+++TD+++W AL EVQL ET+ DLP K++TE+AESGSNFSVG+RQL+CLARA+L++N+IL+IDEATANVD  TD LIQ+ IR KF  CTVLTIAHRLNTIIDSD++MV+D G + E+D PY LLQ  +    K+V Q G+
Sbjct:   20 SRVFFWWLNPLFKIGHKRRLEEDDMYSVLPEDRSQHLGEELQGFWDKEVLRAENDAQKPSLTRAIIKCYWKSYLVLGIFTLIEESAKVIQPIFLGKIINYFENYDPMDSVALNTAYAYATVLTFCTLILAILHHLYFYHVQCAGMRLRVAMCHMIYRKALRLSNMAMGKTTTGQIVNLLSNDVNKFDQVTVFLHFLWAGPLQAIAVTALLWMEIGISCLAGMAVLIILLPLQSCFGKLFSSLRSKTATFTDARIRTMNEVITGIRIIKMYAWEKSFSNLITNLRKKEISKILRSSCLRGMNLASFFSASKIIVFVTFTTYVLLGSVITASRVFVAVTLYGAVRLTVTLFFPSAIERVSEAIVSIRRIQTFLLLDEIS-----QRNRQLPSDGKK------MVHVQDFTAFWDKASETPTLQGLSFTV-RPGELLAVVGPVGAGKSSLLSAVLGELAPSHGLVSVHGRIAYVSQQPWVFSGTLRSNILFGKKYEKERYEKVIKACALKKDLQLLEDGDLTVIGDRGTTLSGGQKARVNLARAVYQDADIYLLDDPLSAVDAEVSRHLFELCICQILHEKITILVTHQLQYLKAASQILILKDGKMVQKGTYTEFLKSGIDFGSLLKKDNEESEQPPVP------GTPTLRNRTFSESSVWSQQSSRPSLKDGALESQD--------------TENVPVTLS----------------------EENRSEGKVGFQAYKNYFRAGAHWIVFIFLILLNTAAQVAYVLQDWWLSYWANKQSMLNVTVNGGGNVTEKLDLNWYLGIYSGLTVATVLFGIARSLLVFYVLVNSSQTLHNKMFESILKAPVLFFDRNPIGRILNRFSKDIGHLDDLLPLTFLDFIQTLLQVVGVVSVAVAVIPWIAIPLVPLGIIFIFLRRYFLETSRDVKRLESTTRSPVFSHLSSSLQGLWTIRAYKAEERCQELFDAHQDLHSEAWFLFLTTSRWFAVRLDAICAMFVIIVAFGSLIL---AKTLDAGQVGLALSYALTLMGMFQWCVRQSAEVENMMISVERVIEYTDLEKEAPWEYQKRPPPAWPHEGVIIFDNVNFMYSPGGPLVLKHLTALIKSQEKVGIVGRTGAGKSSLISALFRLSEPEGKIWIDKILTTEIGLHDLRKKMSIIPQEPVLFTGTMRKNLDPFNEHTDEELWNALQEVQLKETIEDLPGKMDTELAESGSNFSVGQRQLVCLARAILRKNQILIIDEATANVDPRTDELIQKKIREKFAHCTVLTIAHRLNTIIDSDKIMVLDSGRLKEYDEPYVLLQNKESLFYKMVQQLGK 1278

The following BLAST results are available for this feature:

BLAST of TCONS_00049539-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00049539-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MRP4	0.000e+0	39.44	Multidrug resistance-associated protein 4 OS=Homo ...	[more]

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TCONS_00049539-protein (polypeptide) - C. hemisphaerica