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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049539 ID=TCONS_00049539|Name=TCONS_00049539|organism=Clytia hemisphaerica|type=transcript|length=5251bpRun BLAST on NCBI protein sequence of TCONS_00049539-protein >TCONS_00049539-protein ID=TCONS_00049539-protein|Name=TCONS_00049539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1416bp MEILRDNSRKEFKKFPGALSRWFFWYHNETFTVGNQRKLTKNDIYKIPEERun BLAST on NCBI transcript from alignment at scaffold_160:70052..168689- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049539 ID=TCONS_00049539|Name=TCONS_00049539|organism=Clytia hemisphaerica|type=transcript|length=98638bp|location=Sequence derived from alignment at scaffold_160:70052..168689- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_160:70052..168689- >TCONS_00049539 ID=TCONS_00049539|Name=TCONS_00049539|organism=Clytia hemisphaerica|type=CDS|length=131781bp|location=Sequence derived from alignment at scaffold_160:70052..168689- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049539 vs. Swiss-Prot (Human)
Match: MRP4 (Multidrug resistance-associated protein 4 OS=Homo sapiens GN=ABCC4 PE=1 SV=3) HSP 1 Score: 919.457 bits (2375), Expect = 0.000e+0 Identity = 516/1316 (39.21%), Postives = 791/1316 (60.11%), Query Frame = 2
Query: 179 SRWFFWYHNETFTVGNQRKLTKNDIYKIPEEYSSQTMVDVFKRLWSNEIQQKQERNKKPNFLSAVFRFLVPKLLFPLMLMTFSTSLRIASTFFLKFVV------EAILTGSTTEGYYWATALAFGMLGQWLCHHQFFYRSEVVGNNIKTGILGLIYQKALKXXXXXXXXXXXXHVVTLVTTDTRKIQESIKILPFIPLAPXXXXXXXXXXXNQFGVAALTGIALLVIFIPLQIVAGKFFAKMRFKVVKNTDKRVSTMNEIITSMQVTKMYTWEDSYAQLINDVRKKETSSIFTALVVRGINYAFYSSSPYIIGFVIFATFYGLGGQLTLSSVFQTISLLFASRFEICFMFPTGIQCLNEMKVACHRIQNILMYDEMXXXXXXXXXXXXXXDDQKHGSEENIVHFKNVTASWDKNAADPILQSVDLKCDRENCLVMVVGPVGSGKSSLLMAAMNELHVKKGEIKVQGSTAFTTQQPWIFSGTVRQNILFGREYKKDWYQTVIKACGMHTDIRRFKHGDLTLVGEKGVTLSGGQKARVALARAVYSDKDIYYLDDPLSAVDTKVGRYIFENCIQKLLKDKLVILVTHQVQFLKNASDILCLQYGNVCE-GSLNDFQNMGIDLGSIMDTESVVDRSSPSKNIGKDGGGEGFLESNDDDDNVLDEKELL--LEDGVDDSQDQKLNNKLKALPDHLTSNLDVVGNMSAMSLYSNNEIEDVLKEQDNQDETMASGSLSFKVVRNYFYKGLGCFLTFLLPVFLVSGQVVLTFTDYYMAQWARSEQERNTNQTITSPFYYQQNADYNIIIFGSIVLFAVLLDIVRIIYFFYAMVRCNRHLHDAMFTSILKAPIYFFNTHPVGQILNRFSRDTHLVDEELPWXXXXXXXXXXXXXXXVTINCFSXXXXXXXXXXXXXXXXKLRTYYMNIGREVKRLDAVARSPLYTHLSATLSGISTIRAFGLQDRVTNDFHDCTNYQAESWLMFISSVRWFGMRLDFISLVYSMVAIFSPIILLDLSGEMDPNIASVSITYALTLSGLFQFCVRQSAEAENLMVSVERLMEYADIENE-PDNGDLKADKNWPEKGRITASHTSFRYHQSLDNVLKKISFVINGREKIGVVGRTGAGKSTLLNLLFRMGVTDGRVIIDDVDIXXXXXXXXXXXXXIIPQDPVLFNGTLRKNLDPFSKYTDDQIWQALTEVQLSETVGDLPNKLETEVAESGSNFSVGERQLLCLARALLKRNKILVIDEATANVDFETDSLIQETIRMKFQDCTVLTIAHRLNTIIDSDRVMVMDEGEIVEFDLPYSLLQTSDGHLRKLVDQTGE 4096
SR FFW+ N F +G++R+L ++D+Y + E SQ + + + W E+ + + +KP+ A+ + L + S ++ FL ++ + + + + Y +AT L F L + HH +FY + G ++ + +IY+KAL+LS ++G +TG +V L++ D K + L F+ P+ + V+ +L + G++ L G+A+L+I +PLQ GK F+ +R K TD R+ TMNE+IT +++ KMY WE S++ LI ++RKKE S I + +RG+N A + S+ II FV F T+ LG +T S VF ++L A R + FP+ I+ ++E V+ RIQ L+ DE+S + Q + +VH ++ TA WDK + P LQ + R L+ VVGPVG+GKSSLL A + EL G + V G A+ +QQPW+FSGT+R NILFG++Y+K+ Y+ VIKAC + D++ + GDLT++G++G TLSGGQKARV LARAVY D DIY LDDPLSAVD +V R++FE CI ++L +K+ ILVTHQ+Q+LK AS IL L+ G + + G+ +F GID GS++ ++ P G + +V ++ L+DG +SQD T N+ V + +E + G + F+ +NYF G + L + + QV D++++ WA + N + + ++ + I+ + + VL I R + FY +V ++ LH+ MF SILKAP+ FF+ +P+G+ILNRFS+D +D+ LP D ++ LL ++ +V++ +P+I I ++PL +IF+ LR Y++ R+VKRL++ RSP+++HLS++L G+ TIRA+ ++R F + +E+W +F+++ RWF +RLD I ++ ++ F +IL + +D ++++YALTL G+FQ+CVRQSAE EN+M+SVER++EY D+E E P + WP +G I + +F Y VLK ++ +I +EK+G+VGRTGAGKS+L++ LFR+ +G++ ID + + + L DLR +SIIPQ+PVLF GT+RKNLDPF+++TD+++W AL EVQL ET+ DLP K++TE+AESGSNFSVG+RQL+CLARA+L++N+IL+IDEATANVD TD LIQ+ IR KF CTVLTIAHRLNTIIDSD++MV+D G + E+D PY LLQ + K+V Q G+
Sbjct: 20 SRVFFWWLNPLFKIGHKRRLEEDDMYSVLPEDRSQHLGEELQGFWDKEVLRAENDAQKPSLTRAIIKCYWKSYLVLGIFTLIEESAKVIQPIFLGKIINYFENYDPMDSVALNTAYAYATVLTFCTLILAILHHLYFYHVQCAGMRLRVAMCHMIYRKALRLSNMAMGKTTTGQIVNLLSNDVNKFDQVTVFLHFLWAGPLQAIAVTALLWMEIGISCLAGMAVLIILLPLQSCFGKLFSSLRSKTATFTDARIRTMNEVITGIRIIKMYAWEKSFSNLITNLRKKEISKILRSSCLRGMNLASFFSASKIIVFVTFTTYVLLGSVITASRVFVAVTLYGAVRLTVTLFFPSAIERVSEAIVSIRRIQTFLLLDEISQR-----------NRQLPSDGKKMVHVQDFTAFWDKASETPTLQGLSFTV-RPGELLAVVGPVGAGKSSLLSAVLGELAPSHGLVSVHGRIAYVSQQPWVFSGTLRSNILFGKKYEKERYEKVIKACALKKDLQLLEDGDLTVIGDRGTTLSGGQKARVNLARAVYQDADIYLLDDPLSAVDAEVSRHLFELCICQILHEKITILVTHQLQYLKAASQILILKDGKMVQKGTYTEFLKSGIDFGSLLKKDNEESEQPPVP------GTPTLRNRTFSESSVWSQQSSRPSLKDGALESQD--------------TENVPVTLS----------------------EENRSEGKVGFQAYKNYFRAGAHWIVFIFLILLNTAAQVAYVLQDWWLSYWANKQSMLNVTVNGGGNVTEKLDLNWYLGIYSGLTVATVLFGIARSLLVFYVLVNSSQTLHNKMFESILKAPVLFFDRNPIGRILNRFSKDIGHLDDLLPLTFLDFIQTLLQVVGVVSVAVAVIPWIAIPLVPLGIIFIFLRRYFLETSRDVKRLESTTRSPVFSHLSSSLQGLWTIRAYKAEERCQELFDAHQDLHSEAWFLFLTTSRWFAVRLDAICAMFVIIVAFGSLIL---AKTLDAGQVGLALSYALTLMGMFQWCVRQSAEVENMMISVERVIEYTDLEKEAPWEYQKRPPPAWPHEGVIIFDNVNFMYSPGGPLVLKHLTALIKSQEKVGIVGRTGAGKSSLISALFRLSEPEGKIWIDKILTTEIGLHDLRKKMSIIPQEPVLFTGTMRKNLDPFNEHTDEELWNALQEVQLKETIEDLPGKMDTELAESGSNFSVGQRQLVCLARAILRKNQILIIDEATANVDPRTDELIQKKIREKFAHCTVLTIAHRLNTIIDSDKIMVLDSGRLKEYDEPYVLLQNKESLFYKMVQQLGK 1278 The following BLAST results are available for this feature:
BLAST of TCONS_00049539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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