TCONS_00049229-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049229-protein
Unique NameTCONS_00049229-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length642

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049229-protein ID=TCONS_00049229-protein|Name=TCONS_00049229-protein|organism=Clytia hemisphaerica|type=polypeptide|length=642bp
MSIEVVKPTEGILLLQAKENLKLNARKICGKLKVYQERRMVRLNTNNLTR
RNNIKGNVRSLATLPKIKEDEKEKGNNEEENGSVTAVISKPKEEQSVKTL
KWLEENFTRCPGVCLPRCIMYAHYLTFCQEFKFRPACAATFGKIIRQKFP
ELTTRRLGTRGNSKYHYYGVAIKETSNYYHTVYSGRGLTRFSGSKLLSQN
DASRKIMSSAKSGTLLPEFPSPSQLILPSHVEISKMDTFMIMYRTHCQCI
LDTAVAKNYSGIHTYLIHFWQGIPKHMKPLFEVEEIIGLVCICDSITFMV
LNDILVPASLEEITDESLKEIRSFVGSLEKFLSDGLKGCHEDLLKKKLNV
TRRFIQGVQRQISFLHLAKSFREVLADKTIASNLLNELDTIDIKSIGAQA
CYTTVDCTQDQFDLHEEYLTELKELLRKESPVEKYVEWLENIFKAQVLRH
NDLSDFVSFQLRAQEFLLSWSFFGTRIMHMLTLNNSRTYGPFHLIRMMLD
EYLLLITETKFTKQDRKELQKLSEKLIKGSSSSLKVSKFVTKSKFGAPST
KRNSNQLNPEKYAVAATKTTSKITTTSGRCLVNPTGAASSVRQNLPSIAT
LKNNGIVVQGKSLPLTITNISLTNKXSGQIATLNNHKYQFNQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031261XLOC_031261Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049229TCONS_00049229Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR003150DNA-bd_RFX
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 99..174
e-value: 2.5E-33
score: 114.0
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 100..173
IPR003150DNA-binding RFX-type winged-helix domainPFAMPF02257RFX_DNA_bindingcoord: 98..173
e-value: 2.4E-31
score: 108.1
IPR003150DNA-binding RFX-type winged-helix domainPROSITEPS51526RFX_DBDcoord: 99..174
score: 24.336

Blast
[Close]
BLAST of TCONS_00049229-protein vs. Swiss-Prot (Human)
Match: RFX6 (DNA-binding protein RFX6 OS=Homo sapiens GN=RFX6 PE=1 SV=2)

HSP 1 Score: 489.96 bits (1260), Expect = 1.184e-162
Identity = 239/515 (46.41%), Postives = 348/515 (67.57%), Query Frame = 0 
Query:   70 DEKEKGNNE--EENGSVTAVISKPKEEQSVKTLKWLEENFTRCPGVCLPRCIMYAHYLTFCQEFKFRPACAATFGKIIRQKFPELTTRRLGTRGNSKYHYYGVAIKETSNYYHTVYSGRGLTRFSGSKLLSQNDASRKIMSSAKSGTLLPEFPSPSQLILPSHVEISKMDTFMIMYRTHCQCILDTAVAKNYSGIHTYLIHFWQGIPKHMKPLFEVEEIIGLVCICDSITFMVLNDILVPASLEEITDESLKEIRSFVGSLEKFLSDGLKGCHEDLLKKKLNVTRRFIQGVQRQISFLHLAKSFREVLADKTIASNLLNELDTIDIKSIGAQACYTTVDCTQDQFDLHEEY-----LTELKELLRKESPVEKYVEWLENIFKAQVLRHNDLSDFVSFQLRAQEFLLSWSFFGTRIMHMLTLNNSRTYGPFHLIRMMLDEYLLLITETKFTKQDRKELQKLSEKLIKGSSSSLKVSKFVTKSKFGA-PSTKRNSNQLNPEKYAVAATKTTSKITTT 576
            D K K  ++   +  ++T ++ K K++Q+  TL+WLEEN+  C GVCLPRCI+YAHYL FC++ K  PACAATFGK IRQKFP LTTRRLGTRG+SKYHYYG+ IKE+S YYH+VYSG+GLTRFSGSKL ++   +RK   S+K+GTLLPEFPS   L+    +   K+DT ++MY+THCQCILD A+  N+  I  +L+HFWQG+P H+ PL E   II + C+CDSI + VL D+L+PA+++E+ +  L +IR+F  + E+++   L+   E L  KK+ + RRF+  ++RQ SFLHLA+  R  L D+ + ++++++++ +D+ SIG+QA  T    T  +  ++ E+       ELK+LL+K + VE ++EWL+ + + +V++ +   +  S + RAQ+FLL WSFFG R+MH LTLNN+ ++G FHLIRM+LDEY+LL  ET+F     +ELQ L +K +K S +S        K+ F A PS+   +N+      +  A K  S + TT
Sbjct:   94 DSKTKAADQYLSQKKTITQIV-KDKKKQTQLTLQWLEENYIVCEGVCLPRCILYAHYLDFCRKEKLEPACAATFGKTIRQKFPLLTTRRLGTRGHSKYHYYGIGIKESSAYYHSVYSGKGLTRFSGSKLKNEGGFTRKYSLSSKTGTLLPEFPSAQHLVYQGCISKDKVDTLIMMYKTHCQCILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVIIDIFCVCDSILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRFVSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIERVDLNSIGSQALLTISGSTDTESGIYTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSK-QNGRSLKKRAQDFLLKWSFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQFNNDKEQELQNLLDKYMKNSDAS--------KAAFTASPSSCFLANRNKGSMVSSDAVKNESHVETT 598
The following BLAST results are available for this feature:
BLAST of TCONS_00049229-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RFX61.184e-16246.41DNA-binding protein RFX6 OS=Homo sapiens GN=RFX6 P... [more]
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