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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049229 ID=TCONS_00049229|Name=TCONS_00049229|organism=Clytia hemisphaerica|type=transcript|length=3933bpRun BLAST on NCBI protein sequence of TCONS_00049229-protein >TCONS_00049229-protein ID=TCONS_00049229-protein|Name=TCONS_00049229-protein|organism=Clytia hemisphaerica|type=polypeptide|length=642bp MSIEVVKPTEGILLLQAKENLKLNARKICGKLKVYQERRMVRLNTNNLTRRun BLAST on NCBI transcript from alignment at scaffold_154:671250..700610+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049229 ID=TCONS_00049229|Name=TCONS_00049229|organism=Clytia hemisphaerica|type=transcript|length=29361bp|location=Sequence derived from alignment at scaffold_154:671250..700610+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_154:671250..700610+ >TCONS_00049229 ID=TCONS_00049229|Name=TCONS_00049229|organism=Clytia hemisphaerica|type=CDS|length=28935bp|location=Sequence derived from alignment at scaffold_154:671250..700610+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049229 vs. Swiss-Prot (Human)
Match: RFX6 (DNA-binding protein RFX6 OS=Homo sapiens GN=RFX6 PE=1 SV=2) HSP 1 Score: 487.263 bits (1253), Expect = 2.947e-152 Identity = 225/451 (49.89%), Postives = 321/451 (71.18%), Query Frame = 1
Query: 622 ISKPKEEQSVKTLKWLEENFTRCPGVCLPRCIMYAHYLTFCQEFKFRPACAATFGKIIRQKFPELTTRRLGTRGNSKYHYYGVAIKETSNYYHTVYSGRGLTRFSGSKLLSQNDASRKIMSSAKSGTLLPEFPSPSQLILPSHVEISKMDTFMIMYRTHCQCILDTAVAKNYSGIHTYLIHFWQGIPKHMKPLFEVEEIIGLVCICDSITFMVLNDILVPASLEEITDESLKEIRSFVGSLEKFLSDGLKGCHEDLLKKKLNVTRRFIQGVQRQISFLHLAKSFREVLADKTIASNLLNELDTIDIKSIGAQACYTTVDCTQDQFDLHEEY-----LTELKELLRKESPVEKYVEWLENIFKAQVLRHNDLSDFVSFQLRAQEFLLSWSFFGTRIMHMLTLNNSRTYGPFHLIRMMLDEYLLLITETKFTKQDRKELQKLSEKLIKGSSSS 1959
I K K++Q+ TL+WLEEN+ C GVCLPRCI+YAHYL FC++ K PACAATFGK IRQKFP LTTRRLGTRG+SKYHYYG+ IKE+S YYH+VYSG+GLTRFSGSKL ++ +RK S+K+GTLLPEFPS L+ + K+DT ++MY+THCQCILD A+ N+ I +L+HFWQG+P H+ PL E II + C+CDSI + VL D+L+PA+++E+ + L +IR+F + E+++ L+ E L KK+ + RRF+ ++RQ SFLHLA+ R L D+ + ++++++++ +D+ SIG+QA T T + ++ E+ ELK+LL+K + VE ++EWL+ + + +V++ + + S + RAQ+FLL WSFFG R+MH LTLNN+ ++G FHLIRM+LDEY+LL ET+F +ELQ L +K +K S +S
Sbjct: 113 IVKDKKKQTQLTLQWLEENYIVCEGVCLPRCILYAHYLDFCRKEKLEPACAATFGKTIRQKFPLLTTRRLGTRGHSKYHYYGIGIKESSAYYHSVYSGKGLTRFSGSKLKNEGGFTRKYSLSSKTGTLLPEFPSAQHLVYQGCISKDKVDTLIMMYKTHCQCILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVIIDIFCVCDSILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRFVSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIERVDLNSIGSQALLTISGSTDTESGIYTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSK-QNGRSLKKRAQDFLLKWSFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQFNNDKEQELQNLLDKYMKNSDAS 562 The following BLAST results are available for this feature:
BLAST of TCONS_00049229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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