TCONS_00049187-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049187-protein
Unique NameTCONS_00049187-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length512

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049187-protein ID=TCONS_00049187-protein|Name=TCONS_00049187-protein|organism=Clytia hemisphaerica|type=polypeptide|length=512bp
DKNKMATSDYKYTKISELKEGDRDVNIYGIVKYYREPIRTSTGQYNSMLT
LVDESVQDDLEKGIRCNLFGNSVDELPQINKIGDIVRIHRAFIKFFNGRL
QLQANKRAYAWIVVSMDDVENVKSSHENFTFTIIDRRTVEALCEFYKTNV
TSVDEDATNLTMFKDFTMNSYVNCMAKVIGIYRFETNYCLLKVSDGSKVS
FSSFRQSGKIDNTCLMHWVDQDAAEATRNHSFDISVFDDHVKILDDLKVG
DYVLFCNLHIKRVTYSTYTSGMIHTFNLKEVQDSKGWAEVILHSGRSYGR
GISIVEADRTGVADIKGRVQALMDNYQANKAREHVPRPLQDSLTTTDYPA
QPFRAIQTIQNTAVPNKFRLRGKLIGIKPRSIEDFVMKMCNGCDTIYSRS
TSNKCCPSCPEKELEHKIYFQLLVEDHTGLLKADVYDKEAEYFLNSMTPH
ILLTDSARRENVELKMKTLLDDSINPRVKMNLKHFPWIELCLYSFKDAFN
GTVYRVFGTSLI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031234XLOC_031234Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049187TCONS_00049187Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011564Telomer_end-bd_POT1/Cdc13
IPR032042POT1PC
IPR012340NA-bd_OB-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000784nuclear chromosome, telomeric region
Vocabulary: Biological Process
TermDefinition
GO:0000723telomere maintenance
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043047single-stranded telomeric DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000723 telomere maintenance
cellular_component GO:0000784 nuclear chromosome, telomeric region
molecular_function GO:0003677 DNA binding
molecular_function GO:0043047 single-stranded telomeric DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011564Telomeric single stranded DNA binding POT1/Cdc13SMARTSM00976Telo_bind_a_2coord: 12..147
e-value: 3.3E-13
score: 59.9
IPR011564Telomeric single stranded DNA binding POT1/Cdc13PFAMPF02765POT1coord: 12..142
e-value: 2.1E-19
score: 69.7
NoneNo IPR availableGENE3D2.40.50.140coord: 11..159
e-value: 5.3E-32
score: 110.1
NoneNo IPR availableGENE3D2.40.50.140coord: 161..325
e-value: 2.2E-22
score: 78.8
NoneNo IPR availableGENE3D2.40.50.140coord: 340..511
e-value: 2.8E-26
score: 91.5
IPR032042Protection of telomeres protein 1, ssDNA-binding domainPFAMPF16686POT1PCcoord: 164..320
e-value: 1.9E-16
score: 60.3
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 164..322
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 8..146

Blast
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BLAST of TCONS_00049187-protein vs. Swiss-Prot (Human)
Match: POTE1 (Protection of telomeres protein 1 OS=Homo sapiens GN=POT1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.681e-29
Identity = 110/411 (26.76%), Postives = 182/411 (44.28%), Query Frame = 0 
Query:    5 MATSDYKYTKISELKEGDRDVNIYGIVKYYREPIRTSTGQYNSMLTLVDESVQDDLEKGIRCNLFGNSVDELPQINKIGDIVRIHRAFIKFFNGRLQ-LQANKRAYAWIVVSMDDVENVKSSHENFTFTIIDRRTVEALCEFYKTNVTSVDEDATNLTMFKDFTMNSYVNCMAKVIGIYRFETNYCLLKVSDGSKVSFSSFRQSGKIDNTCLMHWVDQDAAEATRNHSFDISVFDDHVKILDDLKVGDYVLFCNLHIKRVTYSTYTSGMIHTFNLKEVQDSKGWAEVILHSGRSYGRGISIVEADRTGVADIKGRVQALMDNYQANKARE--------------------HVPRPLQDSLTT-TDYPAQPFRAIQTIQNTAVPNKFRLRGKLIGIKPRSIEDFVMKMCNGC 393
            +  ++Y YT +++LK G   VN+YG+VK+++ P  +    Y S++T+VD++        + C LF  + + LP I K GDIVR HR  I+ +    Q + ++  A      ++      ++S + F FT  D + VEAL  +  T+++     +  L    D     Y +   +++G    +    LLKV DG++  F S+R    I +  L    D       +N + DI V+D+HV +   LKVG ++   +LH K  + ++    M+               E  LH G SYGRGI ++    + V  +K  +++   N  AN+  +                     V R  Q S T  TD+       +  I     P ++R+R KL   KPR +   V   C  C
Sbjct:    4 VPATNYIYTPLNQLK-GGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQT-----NVKLTCLLFSGNYEALPIIYKNGDIVRFHRLKIQVYKKETQGITSSGFASLTFEGTLGAPIIPRTSSKYFNFTTEDHKMVEALRVWASTHMSP----SWTLLKLCDVQPMQYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRV--LIQDLVLEG--DLSHIHRLQNLTIDILVYDNHVHVARSLKVGSFLRIYSLHTKLQSMNSENQTMLS-------------LEFHLHGGTSYGRGIRVLPESNSDVDQLKKDLES--ANLTANQHSDVICQSEPDDSFPSSGSVSLYEVERCQQLSATILTDHQYLERTPLCAILKQKAPQQYRIRAKLRSYKPRRLFQSVKLHCPKC 385
The following BLAST results are available for this feature:
BLAST of TCONS_00049187-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
POTE15.681e-2926.76Protection of telomeres protein 1 OS=Homo sapiens ... [more]
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