TCONS_00049187 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049187
Unique NameTCONS_00049187
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1767

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049187 ID=TCONS_00049187|Name=TCONS_00049187|organism=Clytia hemisphaerica|type=transcript|length=1767bp
tagataaaaataaaatggctACTAGTGATTATAAATATACAAAGATCTCC
GAGTTGAAAGAAGGTGATCGAGATGTCAACATTTATGGTATTGTCAAATA
TTACAGAGAACCCATCCGCACCAGTACTGGTCAATATAACTCCATGCTTA
CATTGGTCGATGAATCTGTGCAAGACGATCTGGAGAAAGGCATCAGATGT
AATTTGTTTGGTAACAGTGTTGATGAACTACCACAAATCAACAAGATTGG
AGACATTGTACGAATTCACAGAGCCTTCATCAAATTCTTTAATGGAAGGT
TACAATTGCAAGCTAATAAACGAGCTTATGCATGGATCGTGGTGTCAATG
GATGATGTGGAGAATGTCAAATCATCTCATGAGAATTTCACTTTCACCAT
TATAGACAGAAGAACAGTAGAAGCCCTCTGTGAATTCTACAAAACAAATG
TTACATCAGTCGACGAAGATGCAACTAACCTGACAATGTTCAAAGATTTT
ACTATGAACAGCTACGTTAATTGCATGGCAAAAGTGATTGGGATTTACAG
ATTCGAAACAAATTATTGTCTATTGAAAGTATCGGATGGAAGTAAAGTCA
GTTTTTCATCGTTTAGACAAAGTGGCAAAATCGATAATACATGTCTTATG
CACTGGGTTGACCAAGACGCTGCAGAAGCCACCAGAAACCATTCCTTTGA
TATTTCAGTTTTTGACGACCATGTAAAGATTCTGGACGATTTAAAAGTGG
GTgattatgttttattttgtaatctacacatcaAAAGAGTGACCTACAGC
ACCTATACTTCTGGAATGATACACACATTCAATCTGAAAGAGgTGCAAGA
CAGTAAAGGTTGGGCGGAAGTTATTCTTCATTCTGGGCGCTCCTACGGGC
GTGGAATTTCCATTGTTGAGGCAGATCGTACTGGTGTTGCAGACATCAAG
GGGCGGGTACAAGCTTTAATGGACAATTATCAAGCCAATAAAGCAAGAGA
ACACGTACCGAGACCTTTACAAGACTCTTTAACAACCACTGACTACCCAG
CACAACCCTTTCGTGCAATACAGACAATTCAAAATACAGCCGTACCAAAT
AAATTTCGTTTACGAGGGAAATTAATCGGTATAAAACCACGCTCGATCGA
AGACTTTGTTATGAAAATGTGTAATGGGTGTGATACAATATATTCACGTA
GTACCTCCAATAAGTGTTGTCCGAGCTGCCCGGAAAAAGAACTAGAGCAT
AAGATATATTTTCAATTACTGGTCGAAGATCACACAGGACTTTTAAAAGC
TGACGTCTACGATAAAGAGGCAGAATATTTCTTGAACTCGATGACCCCAC
ACATTTTATTGACTGACTCAGCGAGACGTGAAAACGTAGagttgaaaatg
aagactttgTTAGACGACTCGATCAATCCAAGAgtgaaaatgaatttgaa
acACTTCCCTTGGATCGAGTTGTGTTTGTATTCGTTCAAAGATGCGTTTA
ATGGAACTGTTTATCGTGTTTTTGGAACAAGTCTAATTTGACCTACTTGT
TCTAACTGTACTTTTTATGAACTTCTTGATAACATTCCGCAAACTTCTGA
AAGAACCATTCTTCTGCAATACATTCGTGCAAGTCTTCTCAGGAAATTAA
AACAATTGAGTGTAAAGCACCAAagggggacaagctggagtttttacaag
ctctcgtttgatttggttggtcgttaacctgtaataaaacaattttgtta
ctttttctaaagaacgc
Run BLAST on NCBI

protein sequence of TCONS_00049187-protein

>TCONS_00049187-protein ID=TCONS_00049187-protein|Name=TCONS_00049187-protein|organism=Clytia hemisphaerica|type=polypeptide|length=512bp
DKNKMATSDYKYTKISELKEGDRDVNIYGIVKYYREPIRTSTGQYNSMLT
LVDESVQDDLEKGIRCNLFGNSVDELPQINKIGDIVRIHRAFIKFFNGRL
QLQANKRAYAWIVVSMDDVENVKSSHENFTFTIIDRRTVEALCEFYKTNV
TSVDEDATNLTMFKDFTMNSYVNCMAKVIGIYRFETNYCLLKVSDGSKVS
FSSFRQSGKIDNTCLMHWVDQDAAEATRNHSFDISVFDDHVKILDDLKVG
DYVLFCNLHIKRVTYSTYTSGMIHTFNLKEVQDSKGWAEVILHSGRSYGR
GISIVEADRTGVADIKGRVQALMDNYQANKAREHVPRPLQDSLTTTDYPA
QPFRAIQTIQNTAVPNKFRLRGKLIGIKPRSIEDFVMKMCNGCDTIYSRS
TSNKCCPSCPEKELEHKIYFQLLVEDHTGLLKADVYDKEAEYFLNSMTPH
ILLTDSARRENVELKMKTLLDDSINPRVKMNLKHFPWIELCLYSFKDAFN
GTVYRVFGTSLI
Run BLAST on NCBI

transcript from alignment at scaffold_153:15837..18664-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049187 ID=TCONS_00049187|Name=TCONS_00049187|organism=Clytia hemisphaerica|type=transcript|length=2828bp|location=Sequence derived from alignment at scaffold_153:15837..18664- (Clytia hemisphaerica)
TAGATAAAAATAAAATGGCTACTAGTGATTATAAATATACAAAGATCTCC
GAGTTGAAAGAAGGTGATCGAGATGTCAACATTTATGGTATTGTCAAATA
TTACAGAGAACCCATCCGCACCAGTACTGGTCAATATAACTCCATGCTTA
CATTGGTCGATGAATCTGTGCAAGACGATCTGGAGAAAGGCATCAGATGT
AATTTGTTTGGTAACAGTGTTGATGAACTACCACAAATCAACAAGATTGG
AGACATTGTACGAATTCACAGAGCCTTCATCAAATTCTTTAATGGAAGGT
TACAATTGCAAGCTAATAAACGAGCTTATGCATGGTAAGATTCTCCTTCA
ATCTCCTTCTTCAAAACTCACTGATCTTCTAGCCAAGAATATTTTTCATT
GTTTTGCTGATAGTAGAACTACGGCCAACATAGTCAGATAGAATATGAAT
TTAGGGATCACCAAAGAGTTTAAGGAAAGTTCCTCATGTGGTATATTTGT
AAGAAAGAAATGATAAATAGGATGATAAACGGGCACTAGATTTTTCATTT
TTTTGAAATTTCTATGCATAGAATATCGAGAAAAATACCCGCAAAAAATG
TCCATTTTTAGCTCCAGTATGCTGCTACCATGGCTCCAGACCTTTTAAAA
GGCTAAAATGAACAACGTGGAAGTGGTGAAACTCTAAACATCCATAACAA
TATCCACCTATTGATTTTAGGATCGTGGTGTCAATGGATGATGTGNTCTA
AACATCCATAACAATATCCACCTTTTGATTTTAGGATCGTGGTGTCAATG
GATGATGTGGAGAATGTCAAATCATCTCATGAGAATTTCACTTTCACCAT
TATAGACAGAAGAACAGTAGAAGCCCTCTGTGAATTCTACAAAACAAATG
TTACATCAGTCGACGAAGATGCAACTAACCTGACAATGTTCAAAGATTTT
ACTATGAACAGCTACGTTAATTGCATGGCAAAAGTGATTGGGATTTACAG
ATTCGAAACAAATTATTGTCTATTGAAAGTATCGGATGGAAGTAAAGTCA
GTTTTTCATCGTTTAGACAAAGTGGCAAAATCGATAATACATGTCTTATG
CACTGGGTTGACCAAGACGCTGCAGAAGCCACCAGAAACCATTCCTTTGA
TATTTCAGTTTTTGACGACCATGTAAAGATTCTGGACGATTTAAAAGTGG
GTGATTATGTTTTATTTTGTAATCTACACATCAAAAGAGTGACCTACAGC
ACCTATACTTCTGGAATGATACACACATTCAATCTGAAAGAGGTATGAGA
ATTCATTTAACAGAACTCGTGTTTTTACAAATGTTTCTTGGTAGTAAATT
AGTCGTCTAAATGGGCCCCTAAATGAAAAAAAGTAAAGCTCGAAAGAAAA
AAAATCAATCACTCATTTTTGGGAGGTCAGTTTTCTAAATTATAACGACT
ATAAGCTTATCCTTTGAAAAGCCTGGTTTAATTTTCCACCTTTTAAGATT
TTGGAGAAACCATGTAACGTTTTCGACAAGACGATATTTATTAGCGGTTT
TTCGGGGGTTAAAAGTTCTATTTTAGGACCCATTTCGAGTCAATTTGAAA
AGACATTATGAAAAATAGCCGAAAGTTTTCAAAATAGCCTTTCTCGGCAA
AAAAAGTGAAGGGAAGCAAAATAAATGCAACGAGCTGAAGAAAAAAGGCG
CTCGGAATAATTGTCGAGTCCCCCTCCTCTACGGCACGTTCATCTCAATG
TCCATCTATAGCTAAATCTACTTTAATTTTTAGTTGTATATTTAAACAGT
GTTATAACAGACTTGTTTGCAAGTTTGATCCAATCGGTCAATCTTGCCTG
AAATCTTAATACTGCAATCCCGAAAATGTCTTACTTTTTTTTTCATTCTT
TAGGTGCAAGACAGTAAAGGTTGGGCGGAAGTTATTCTTCATTCTGGGCG
CTCCTACGGGCGTGGAATTTCCATTGTTGAGGCAGATCGTACTGGTGTTG
CAGACATCAAGGGGCGGGTACAAGCTTTAATGGACAATTATCAAGCCAAT
AAAGCAAGAGAACACGTACCGAGACCTTTACAAGACTCTTTAACAACCAC
TGACTACCCAGCACAACCCTTTCGTGCAATACAGACAATTCAAAATACAG
CCGTACCAAATAAATTTCGTTTACGAGGGAAATTAATCGGTATAAAACCA
CGCTCGATCGAAGACTTTGTTATGAAAATGTGTAATGGGTGTGATACAAT
ATATTCACGTAGTACCTCCAATAAGTGTTGTCCGAGCTGCCCGGAAAAAG
AACTAGAGCATAAGATATATTTTCAATTACTGGTCGAAGATCACACAGGA
CTTTTAAAAGCTGACGTCTACGATAAAGAGGCAGAATATTTCTTGAACTC
GATGACCCCACACATTTTATTGACTGACTCAGCGAGACGTGAAAACGTAG
AGTTGAAAATGAAGACTTTGTTAGACGACTCGATCAATCCAAGAGTGAAA
ATGAATTTGAAACACTTCCCTTGGATCGAGTTGTGTTTGTATTCGTTCAA
AGATGCGTTTAATGGAACTGTTTATCGTGTTTTTGGAACAAGTCTAATTT
GACCTACTTGTTCTAACTGTACTTTTTATGAACTTCTTGATAACATTCCG
CAAACTTCTGAAAGAACCATTCTTCTGCAATACATTCGTGCAAGTCTTCT
CAGGAAATTAAAACAATTGAGTGTAAAGCACCAAAGGGGGACAAGCTGGA
GTTTTTACAAGCTCTCGTTTGATTTGGTTGGTCGTTAACCTGTAATAAAA
CAATTTTGTTACTTTTTCTAAAGAACGC

Coding sequence (CDS) from alignment at scaffold_153:15837..18664-

>TCONS_00049187 ID=TCONS_00049187|Name=TCONS_00049187|organism=Clytia hemisphaerica|type=CDS|length=6156bp|location=Sequence derived from alignment at scaffold_153:15837..18664- (Clytia hemisphaerica)
GTGCAAGACAGTAAAGGTTGGGCGGAAGTTATTCTTCATTCTGGGCGCTC
CTACGGGCGTGGAATTTCCATTGTTGAGGCAGATCGTACTGGTGTTGCAG
ACATCAAGGGGCGGGTACAAGCTTTAATGGACAATTATCAAGCCAATAAA
GCAAGAGAACACGTACCGAGACCTTTACAAGACTCTTTAACAACCACTGA
CTACCCAGCACAACCCTTTCGTGCAATACAGACAATTCAAAATACAGCCG
TACCAAATAAATTTCGTTTACGAGGGAAATTAATCGGTATAAAACCACGC
TCGATCGAAGACTTTGTTATGAAAATGTGTAATGGGTGTGATACAATATA
TTCACGTAGTACCTCCAATAAGTGTTGTCCGAGCTGCCCGGAAAAAGAAC
TAGAGCATAAGATATATTTTCAATTACTGGTCGAAGATCACACAGGACTT
TTAAAAGCTGACGTCTACGATAAAGAGGCAGAATATTTCTTGAACTCGAT
GACCCCACACATTTTATTGACTGACTCAGCGAGACGTGAAAACGTAGAGT
TGAAAATGAAGACTTTGTTAGACGACTCGATCAATCCAAGAGTGAAAATG
AATTTGAAACACTTCCCTTGGATCGAGTTGTGTTTGTATTCGTTCAAAGA
TGCGTTTAATGGAACTGTTTATCGTGTTTTTGGAACAAGTCTAATTTGAG
TGGAGAATGTCAAATCATCTCATGAGAATTTCACTTTCACCATTATAGAC
AGAAGAACAGTAGAAGCCCTCTGTGAATTCTACAAAACAAATGTTACATC
AGTCGACGAAGATGCAACTAACCTGACAATGTTCAAAGATTTTACTATGA
ACAGCTACGTTAATTGCATGGCAAAAGTGATTGGGATTTACAGATTCGAA
ACAAATTATTGTCTATTGAAAGTATCGGATGGAAGTAAAGTCAGTTTTTC
ATCGTTTAGACAAAGTGGCAAAATCGATAATACATGTCTTATGCACTGGG
TTGACCAAGACGCTGCAGAAGCCACCAGAAACCATTCCTTTGATATTTCA
GTTTTTGACGACCATGTAAAGATTCTGGACGATTTAAAAGTGGGTGATTA
TGTTTTATTTTGTAATCTACACATCAAAAGAGTGACCTACAGCACCTATA
CTTCTGGAATGATACACACATTCAATCTGAAAGAGGATCGTGGTGTCAAT
GGATGATGATAAAAATAAAATGGCTACTAGTGATTATAAATATACAAAGA
TCTCCGAGTTGAAAGAAGGTGATCGAGATGTCAACATTTATGGTATTGTC
AAATATTACAGAGAACCCATCCGCACCAGTACTGGTCAATATAACTCCAT
GCTTACATTGGTCGATGAATCTGTGCAAGACGATCTGGAGAAAGGCATCA
GATGTAATTTGTTTGGTAACAGTGTTGATGAACTACCACAAATCAACAAG
ATTGGAGACATTGTACGAATTCACAGAGCCTTCATCAAATTCTTTAATGG
AAGGTTACAATTGCAAGCTAATAAACGAGCTTATGCATGGTGCAAGACAG
TAAAGGTTGGGCGGAAGTTATTCTTCATTCTGGGCGCTCCTACGGGCGTG
GAATTTCCATTGTTGAGGCAGATCGTACTGGTGTTGCAGACATCAAGGGG
CGGGTACAAGCTTTAATGGACAATTATCAAGCCAATAAAGCAAGAGAACA
CGTACCGAGACCTTTACAAGACTCTTTAACAACCACTGACTACCCAGCAC
AACCCTTTCGTGCAATACAGACAATTCAAAATACAGCCGTACCAAATAAA
TTTCGTTTACGAGGGAAATTAATCGGTATAAAACCACGCTCGATCGAAGA
CTTTGTTATGAAAATGTGTAATGGGTGTGATACAATATATTCACGTAGTA
CCTCCAATAAGTGTTGTCCGAGCTGCCCGGAAAAAGAACTAGAGCATAAG
ATATATTTTCAATTACTGGTCGAAGATCACACAGGACTTTTAAAAGCTGA
CGTCTACGATAAAGAGGCAGAATATTTCTTGAACTCGATGACCCCACACA
TTTTATTGACTGACTCAGCGAGACGTGAAAACGTAGAGTTGAAAATGAAG
ACTTTGTTAGACGACTCGATCAATCCAAGAGTGAAAATGAATTTGAAACA
CTTCCCTTGGATCGAGTTGTGTTTGTATTCGTTCAAAGATGCGTTTAATG
GAACTGTTTATCGTGTTTTTGGAACAAGTCTAATTTGAGTGGAGAATGTC
AAATCATCTCATGAGAATTTCACTTTCACCATTATAGACAGAAGAACAGT
AGAAGCCCTCTGTGAATTCTACAAAACAAATGTTACATCAGTCGACGAAG
ATGCAACTAACCTGACAATGTTCAAAGATTTTACTATGAACAGCTACGTT
AATTGCATGGCAAAAGTGATTGGGATTTACAGATTCGAAACAAATTATTG
TCTATTGAAAGTATCGGATGGAAGTAAAGTCAGTTTTTCATCGTTTAGAC
AAAGTGGCAAAATCGATAATACATGTCTTATGCACTGGGTTGACCAAGAC
GCTGCAGAAGCCACCAGAAACCATTCCTTTGATATTTCAGTTTTTGACGA
CCATGTAAAGATTCTGGACGATTTAAAAGTGGGTGATTATGTTTTATTTT
GTAATCTACACATCAAAAGAGTGACCTACAGCACCTATACTTCTGGAATG
ATACACACATTCAATCTGAAAGAGGATCGTGGTGTCAATGGATGATGATA
AAAATAAAATGGCTACTAGTGATTATAAATATACAAAGATCTCCGAGTTG
AAAGAAGGTGATCGAGATGTCAACATTTATGGTATTGTCAAATATTACAG
AGAACCCATCCGCACCAGTACTGGTCAATATAACTCCATGCTTACATTGG
TCGATGAATCTGTGCAAGACGATCTGGAGAAAGGCATCAGATGTAATTTG
TTTGGTAACAGTGTTGATGAACTACCACAAATCAACAAGATTGGAGACAT
TGTACGAATTCACAGAGCCTTCATCAAATTCTTTAATGGAAGGTTACAAT
TGCAAGCTAATAAACGAGCTTATGCATGGTGCAAGACAGTAAAGGTTGGG
CGGAAGTTATTCTTCATTCTGGGCGCTCCTACGGGCGTGGAATTTCCATT
GTTGAGGCAGATCGTACTGGTGTTGCAGACATCAAGGGGCGGGTACAAGC
TTTAATGGACAATTATCAAGCCAATAAAGCAAGAGAACACGTACCGAGAC
CTTTACAAGACTCTTTAACAACCACTGACTACCCAGCACAACCCTTTCGT
GCAATACAGACAATTCAAAATACAGCCGTACCAAATAAATTTCGTTTACG
AGGGAAATTAATCGGTATAAAACCACGCTCGATCGAAGACTTTGTTATGA
AAATGTGTAATGGGTGTGATACAATATATTCACGTAGTACCTCCAATAAG
TGTTGTCCGAGCTGCCCGGAAAAAGAACTAGAGCATAAGATATATTTTCA
ATTACTGGTCGAAGATCACACAGGACTTTTAAAAGCTGACGTCTACGATA
AAGAGGCAGAATATTTCTTGAACTCGATGACCCCACACATTTTATTGACT
GACTCAGCGAGACGTGAAAACGTAGAGTTGAAAATGAAGACTTTGTTAGA
CGACTCGATCAATCCAAGAGTGAAAATGAATTTGAAACACTTCCCTTGGA
TCGAGTTGTGTTTGTATTCGTTCAAAGATGCGTTTAATGGAACTGTTTAT
CGTGTTTTTGGAACAAGTCTAATTTGAGTGGAGAATGTCAAATCATCTCA
TGAGAATTTCACTTTCACCATTATAGACAGAAGAACAGTAGAAGCCCTCT
GTGAATTCTACAAAACAAATGTTACATCAGTCGACGAAGATGCAACTAAC
CTGACAATGTTCAAAGATTTTACTATGAACAGCTACGTTAATTGCATGGC
AAAAGTGATTGGGATTTACAGATTCGAAACAAATTATTGTCTATTGAAAG
TATCGGATGGAAGTAAAGTCAGTTTTTCATCGTTTAGACAAAGTGGCAAA
ATCGATAATACATGTCTTATGCACTGGGTTGACCAAGACGCTGCAGAAGC
CACCAGAAACCATTCCTTTGATATTTCAGTTTTTGACGACCATGTAAAGA
TTCTGGACGATTTAAAAGTGGGTGATTATGTTTTATTTTGTAATCTACAC
ATCAAAAGAGTGACCTACAGCACCTATACTTCTGGAATGATACACACATT
CAATCTGAAAGAGGATCGTGGTGTCAATGGATGATGATAAAAATAAAATG
GCTACTAGTGATTATAAATATACAAAGATCTCCGAGTTGAAAGAAGGTGA
TCGAGATGTCAACATTTATGGTATTGTCAAATATTACAGAGAACCCATCC
GCACCAGTACTGGTCAATATAACTCCATGCTTACATTGGTCGATGAATCT
GTGCAAGACGATCTGGAGAAAGGCATCAGATGTAATTTGTTTGGTAACAG
TGTTGATGAACTACCACAAATCAACAAGATTGGAGACATTGTACGAATTC
ACAGAGCCTTCATCAAATTCTTTAATGGAAGGTTACAATTGCAAGCTAAT
AAACGAGCTTATGCATGGTGCAAGACAGTAAAGGTTGGGCGGAAGTTATT
CTTCATTCTGGGCGCTCCTACGGGCGTGGAATTTCCATTGTTGAGGCAGA
TCGTACTGGTGTTGCAGACATCAAGGGGCGGGTACAAGCTTTAATGGACA
ATTATCAAGCCAATAAAGCAAGAGAACACGTACCGAGACCTTTACAAGAC
TCTTTAACAACCACTGACTACCCAGCACAACCCTTTCGTGCAATACAGAC
AATTCAAAATACAGCCGTACCAAATAAATTTCGTTTACGAGGGAAATTAA
TCGGTATAAAACCACGCTCGATCGAAGACTTTGTTATGAAAATGTGTAAT
GGGTGTGATACAATATATTCACGTAGTACCTCCAATAAGTGTTGTCCGAG
CTGCCCGGAAAAAGAACTAGAGCATAAGATATATTTTCAATTACTGGTCG
AAGATCACACAGGACTTTTAAAAGCTGACGTCTACGATAAAGAGGCAGAA
TATTTCTTGAACTCGATGACCCCACACATTTTATTGACTGACTCAGCGAG
ACGTGAAAACGTAGAGTTGAAAATGAAGACTTTGTTAGACGACTCGATCA
ATCCAAGAGTGAAAATGAATTTGAAACACTTCCCTTGGATCGAGTTGTGT
TTGTATTCGTTCAAAGATGCGTTTAATGGAACTGTTTATCGTGTTTTTGG
AACAAGTCTAATTTGAGTGGAGAATGTCAAATCATCTCATGAGAATTTCA
CTTTCACCATTATAGACAGAAGAACAGTAGAAGCCCTCTGTGAATTCTAC
AAAACAAATGTTACATCAGTCGACGAAGATGCAACTAACCTGACAATGTT
CAAAGATTTTACTATGAACAGCTACGTTAATTGCATGGCAAAAGTGATTG
GGATTTACAGATTCGAAACAAATTATTGTCTATTGAAAGTATCGGATGGA
AGTAAAGTCAGTTTTTCATCGTTTAGACAAAGTGGCAAAATCGATAATAC
ATGTCTTATGCACTGGGTTGACCAAGACGCTGCAGAAGCCACCAGAAACC
ATTCCTTTGATATTTCAGTTTTTGACGACCATGTAAAGATTCTGGACGAT
TTAAAAGTGGGTGATTATGTTTTATTTTGTAATCTACACATCAAAAGAGT
GACCTACAGCACCTATACTTCTGGAATGATACACACATTCAATCTGAAAG
AGGATCGTGGTGTCAATGGATGATGATAAAAATAAAATGGCTACTAGTGA
TTATAAATATACAAAGATCTCCGAGTTGAAAGAAGGTGATCGAGATGTCA
ACATTTATGGTATTGTCAAATATTACAGAGAACCCATCCGCACCAGTACT
GGTCAATATAACTCCATGCTTACATTGGTCGATGAATCTGTGCAAGACGA
TCTGGAGAAAGGCATCAGATGTAATTTGTTTGGTAACAGTGTTGATGAAC
TACCACAAATCAACAAGATTGGAGACATTGTACGAATTCACAGAGCCTTC
ATCAAATTCTTTAATGGAAGGTTACAATTGCAAGCTAATAAACGAGCTTA
TGCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031234XLOC_031234Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049187-exon-scaffold_153-1575043694:18331..18664TCONS_00049187-exon-scaffold_153-1575043694:18331..18664Clytia hemisphaericaexon
TCONS_00049187-exon-scaffold_153-1575043694:17923..17944TCONS_00049187-exon-scaffold_153-1575043694:17923..17944Clytia hemisphaericaexon
TCONS_00049187-exon-scaffold_153-1575043694:17373..17858TCONS_00049187-exon-scaffold_153-1575043694:17373..17858Clytia hemisphaericaexon
TCONS_00049187-exon-scaffold_153-1575043694:15837..16761TCONS_00049187-exon-scaffold_153-1575043694:15837..16761Clytia hemisphaericaexon
TCONS_00049187-exon-scaffold_153-1510915933:18331..18664TCONS_00049187-exon-scaffold_153-1510915933:18331..18664Clytia hemisphaericaexon
TCONS_00049187-exon-scaffold_153-1510915933:17923..17944TCONS_00049187-exon-scaffold_153-1510915933:17923..17944Clytia hemisphaericaexon
TCONS_00049187-exon-scaffold_153-1510915933:17373..17858TCONS_00049187-exon-scaffold_153-1510915933:17373..17858Clytia hemisphaericaexon
TCONS_00049187-exon-scaffold_153-1510915933:15837..16761TCONS_00049187-exon-scaffold_153-1510915933:15837..16761Clytia hemisphaericaexon
TCONS_00049187-exon-scaffold_153-1491911889:18331..18664TCONS_00049187-exon-scaffold_153-1491911889:18331..18664Clytia hemisphaericaexon
TCONS_00049187-exon-scaffold_153-1491911889:17923..17944TCONS_00049187-exon-scaffold_153-1491911889:17923..17944Clytia hemisphaericaexon
TCONS_00049187-exon-scaffold_153-1491911889:17373..17858TCONS_00049187-exon-scaffold_153-1491911889:17373..17858Clytia hemisphaericaexon
TCONS_00049187-exon-scaffold_153-1491911889:15837..16761TCONS_00049187-exon-scaffold_153-1491911889:15837..16761Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049187-proteinTCONS_00049187-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_153supercontigscaffold_153:15837..18664 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.35344	0.196369	1.75785	6.87449	0.27518	5.44283	6.10988	0.0918169	0.627524	6.30211	4.9961	5.04944	4.07899	3.12665	3.21752	1.29684	2.37904e-08	0.00207353	1.54209	2.76414	4.11252	0.0147043	20.1792	20.3736	2.7869	0.00169639	0.00200635	5.54055	1.32468	25.5782
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011564Telomer_end-bd_POT1/Cdc13
IPR032042POT1PC
IPR012340NA-bd_OB-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000784nuclear chromosome, telomeric region
Vocabulary: Biological Process
TermDefinition
GO:0000723telomere maintenance
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043047single-stranded telomeric DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000723 telomere maintenance
cellular_component GO:0000784 nuclear chromosome, telomeric region
molecular_function GO:0003677 DNA binding
molecular_function GO:0043047 single-stranded telomeric DNA binding
Blast
[Close]
BLAST of TCONS_00049187 vs. Swiss-Prot (Human)
Match: POTE1 (Protection of telomeres protein 1 OS=Homo sapiens GN=POT1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.584e-28
Identity = 110/411 (26.76%), Postives = 182/411 (44.28%), Query Frame = 3 
Query:   15 MATSDYKYTKISELKEGDRDVNIYGIVKYYREPIRTSTGQYNSMLTLVDESVQDDLEKGIRCNLFGNSVDELPQINKIGDIVRIHRAFIKFFNGRLQ-LQANKRAYAWIVVSMDDVENVKSSHENFTFTIIDRRTVEALCEFYKTNVTSVDEDATNLTMFKDFTMNSYVNCMAKVIGIYRFETNYCLLKVSDGSKVSFSSFRQSGKIDNTCLMHWVDQDAAEATRNHSFDISVFDDHVKILDDLKVGDYVLFCNLHIKRVTYSTYTSGMIHTFNLKEVQDSKGWAEVILHSGRSYGRGISIVEADRTGVADIKGRVQALMDNYQANKARE--------------------HVPRPLQDSLTT-TDYPAQPFRAIQTIQNTAVPNKFRLRGKLIGIKPRSIEDFVMKMCNGC 1181
            +  ++Y YT +++LK G   VN+YG+VK+++ P  +    Y S++T+VD++        + C LF  + + LP I K GDIVR HR  I+ +    Q + ++  A      ++      ++S + F FT  D + VEAL  +  T+++     +  L    D     Y +   +++G    +    LLKV DG++  F S+R    I +  L    D       +N + DI V+D+HV +   LKVG ++   +LH K  + ++    M+               E  LH G SYGRGI ++    + V  +K  +++   N  AN+  +                     V R  Q S T  TD+       +  I     P ++R+R KL   KPR +   V   C  C
Sbjct:    4 VPATNYIYTPLNQLK-GGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQT-----NVKLTCLLFSGNYEALPIIYKNGDIVRFHRLKIQVYKKETQGITSSGFASLTFEGTLGAPIIPRTSSKYFNFTTEDHKMVEALRVWASTHMSP----SWTLLKLCDVQPMQYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRV--LIQDLVLEG--DLSHIHRLQNLTIDILVYDNHVHVARSLKVGSFLRIYSLHTKLQSMNSENQTMLS-------------LEFHLHGGTSYGRGIRVLPESNSDVDQLKKDLES--ANLTANQHSDVICQSEPDDSFPSSGSVSLYEVERCQQLSATILTDHQYLERTPLCAILKQKAPQQYRIRAKLRSYKPRRLFQSVKLHCPKC 385
The following BLAST results are available for this feature:
BLAST of TCONS_00049187 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
POTE11.584e-2826.76Protection of telomeres protein 1 OS=Homo sapiens ... [more]
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