SWI/SNEF class chromatin regulator protein (polypeptide) - C. hemisphaerica

Overview
NameSWI/SNEF class chromatin regulator protein
Unique NameTCONS_00048495-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length380

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048495-protein ID=TCONS_00048495-protein|Name=SWI/SNEF class chromatin regulator protein|organism=Clytia hemisphaerica|type=polypeptide|length=380bp
MPPLQTYGEKPKSFQLSEGSDELFMIGSEVGTYLRMMRGSIYKRYPYLWK
RMASGEERKKMHKYANHPLQAHVMIVRAKEIDDLIEGKDAQFKTESQQAA
AARDSPSTSSRKTRQTAGKQESFLPTLGPNHLDAVPAGTPISRHRVGQKR
VKTFPTCYDDHDMAAIHEAAKQNEELIPIRLDIEVDGQKLRDTFTWNKNE
KLITLESFAEVLCDDLDLPTQSFVPLIVTNMQQQIKQHGVESEITLSEMT
DQRVVIKLNLHVGNVSLQDQFEWDMSDPLNNPEQFALSLCTELGLGGEFV
TAVAYSIRGQLNWNKKTYVFSEHPLPTVEVALRTGMDIDKWCPYLETLTD
AEMEKKLRDQDRNTRRMRRLANTAPYSLQI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030845XLOC_030845Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048495TCONS_00048495Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006939SNF5
IPR017393Sfh1/SNF5
Vocabulary: Cellular Component
TermDefinition
GO:0000228nuclear chromosome
Vocabulary: Biological Process
TermDefinition
GO:0006338chromatin remodeling
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006338 chromatin remodeling
cellular_component GO:0000228 nuclear chromosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006939SNF5/SMARCB1/INI1PFAMPF04855SNF5coord: 248..365
e-value: 2.6E-28
score: 99.3
coord: 170..241
e-value: 1.1E-24
score: 87.4
IPR017393Chromatin-remodeling complex component Sfh1/SNF5PIRSFPIRSF038126SWI_SNFcoord: 3..375
e-value: 1.2E-117
score: 391.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..146

Blast
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BLAST of SWI/SNEF class chromatin regulator protein vs. Swiss-Prot (Human)
Match: SNF5 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Homo sapiens GN=SMARCB1 PE=1 SV=2)

HSP 1 Score: 451.44 bits (1160), Expect = 5.564e-159
Identity = 223/387 (57.62%), Postives = 286/387 (73.90%), Query Frame = 0 
Query:    5 QTYGEKPKSFQLSEGSDELFMIGSEVGTYLRMMRGSIYKRYPYLWKRMASGEERKKM----HKYANHP---------LQAHVMIVRAKEIDDLIEGKDAQFKTESQQAAAARDSPSTSSRKTRQTAGKQESFLPTLGPN---HLDAVPAGTPISRHRVGQKRVKTFPTCYDDHDMAAIHEAAKQNEELIPIRLDIEVDGQKLRDTFTWNKNEKLITLESFAEVLCDDLDLPTQSFVPLIVTNMQQQIKQHGVESEITLSEMTDQRVVIKLNLHVGNVSLQDQFEWDMSDPLNNPEQFALSLCTELGLGGEFVTAVAYSIRGQLNWNKKTYVFSEHPLPTVEVALRTGMDIDKWCPYLETLTDAEMEKKLRDQDRNTRRMRRLANTAP 375
            +T+G+KP  FQL E   E +MIGSEVG YLRM RGS+YKRYP LW+R+A+ EERKK+    H     P         L   V +++A E++++++G D ++K     A +    P T  R+  Q A +   ++PTL PN   HLDAVP  T I+R+R+G+ + +TFP C+DDHD A IHE A Q E L+PIRLD+E+DGQKLRD FTWN NEKL+T E F+E+LCDDLDL   +FVP I + ++QQI+ +  +S   L + +DQRV+IKLN+HVGN+SL DQFEWDMS+  N+PE+FAL LC+ELGLGGEFVT +AYSIRGQL+W++KTY FSE+PLPTVE+A+R   D D+WCP LETLTDAEMEKK+RDQDRNTRRMRRLANTAP
Sbjct:    8 KTFGQKPVKFQL-EDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYK-----AVSISTEPPTYLRE--QKAKRNSQWVPTL-PNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQIESYPTDS--ILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAP 383
The following BLAST results are available for this feature:
BLAST of SWI/SNEF class chromatin regulator protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNF55.564e-15957.62SWI/SNF-related matrix-associated actin-dependent ... [more]
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