TCONS_00048495 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048495
Unique NameTCONS_00048495
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2003

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048495 ID=TCONS_00048495|Name=TCONS_00048495|organism=Clytia hemisphaerica|type=transcript|length=2003bp
GCGGAACAGAAAAACTATTCCGGGTAAAATGGAATGTCAAGCAGTAGGGC
AGCCATGCACGGAATAAACAAAAAACCAATATTGCGGCAAAATCTGAGTT
GTGAGTTTGGAGAAAAGACCAACATTTTGGAGGTTTGTAAATCTTACCTT
TTATCTGCTTCAAAGACAAGATTTACTGTGGTAAAATTGTACATTTTTCC
TTtggaattgttatttactgttCACTGTTCTATATACTATTTGAGCAATC
TGGCTGGATTCATTATTCATCAGAGGAGACTAAGTAACTACTGAAGTAAC
ACTTTGAAAATGCCACCACTTCAAACATATGGCGAAAAGCCAAAATCTTT
TCAACTGAGTGAGGGTAGCGATGAACTTTTCATGATTGGAAGTGAAGTTG
GAACCTATCTACGGATGATGAGGGGTTCTATTTACAAAAGATATCCCTAT
TTATGGAAACGAATGGCCAGTGGAGAAGAACGTAAAAAGATGCACAAATA
TGCAAACCACCCACTACAAGCACATGTAATGATTGTAAGAGCTAAAGAAA
TTGATGATTTAATTGAAGGGAAAGATGCCCAATTTAAGACCGAAAGTCAA
CAAGCTGCTGCTGCAAGAGATTCACCCTCTACCAGTAGTCGCAAAACAAG
ACAGACTGCTGGAAAACAAGAATCTTTTCTACCAACTCTTGGTCCTAATC
ATTTGGACGCTGTTCCAGCTGGTACACCTATCAGTAGGCATCGTGTTGGC
CAAAAAAGAGTTAAAACATTTCCAACATGTTACGATGACCATGACATGGC
AGCTATACACGAAGCAGCTAAACAAAATGAAGAACTCATCCCAATACGAC
TCGATATTGAAGTTGATGGGCAGAAACTTCGTGACACATTTACATGgaac
aaaaatgAGAAACTGATCACATTGGAATCATTTGCAGAAGTATTATGTGA
CGATCTTGATTTACCAACGCAGAGTTTTGTTCCTCTGATCGTCACCAATA
TGCAGCAGCAAATCAAACAACATGGTGTAGAATCGGAAATCACGCTCTCT
GAAATGACTGACCAAAGAGTGGTTATCAAGTTGAATCTTCACGTCGGTAA
TGTTTCGTTACAAGATCAATTCGAATGGGACATGTCAGATCCTCTAAACA
ACCCAGAACAATTCGCTCTATCTTTGTGTACAGAACTCGGTCTAGGTGGT
GAATTCGTTACAGCTGTTGCTTACAGTATACGCGGCCAACTAAACTGGAA
CAAGAAAACATACGTGTTTAGTGAACATCCTTTACCTACAGTTGAAGTTG
CCCTTCGCACTGGAATGGATATTGATAAATGGTGTCCGTATCTCGAAACA
CTGACAGACGCAGAAATGGAAAAGAAACTGAGAGACCAAGACAGGAACAC
AAGgcgtATGAGACGTTTAGCGAATACTGCACCCTATTCCTtgcaaatat
aaacaaacatgAGTCATCCATCATCGAACCTCTTACATAGAATTGAAGTC
AATACTTGTTGGTGATCATAATTTCATCTACAGGACACTATTTTGTCATT
CCGTATATAACAAGCAAATgcaaacaaattaaaaacatgGAACTTATAGA
TATTACATCGGGTTGTTCGGGAGAGTATCGCTTTACAACCTTAAACCTgt
atttccttattttttgaaatggagatttttcatttTACGTATTTACAAAG
GAAAATGTTGTGGACGTCCTACTCAAATTGAACAGATATTGACGACAAGA
TGTCAAGATTagcaagaacaaaagaaaaattgttcCCTAAAAACTGCATT
ATGCAAAAGAATAAACCCGTTTTTGGAggattttttaaaagactttCTCA
GATTTAGAGAAATACGTATAGTTTCAATGTATATATCGATTTTTAAAACA
TAAGTTAAAGAATATCCATTAAAATGTATTCAAAAAGTGTAAACTGGAAA
TTTACTTTGAagaccattttgatttttcagtttTACAGCCGAAAGTACCA
AAA
Run BLAST on NCBI

protein sequence of SWI/SNEF class chromatin regulator protein

>TCONS_00048495-protein ID=TCONS_00048495-protein|Name=SWI/SNEF class chromatin regulator protein|organism=Clytia hemisphaerica|type=polypeptide|length=380bp
MPPLQTYGEKPKSFQLSEGSDELFMIGSEVGTYLRMMRGSIYKRYPYLWK
RMASGEERKKMHKYANHPLQAHVMIVRAKEIDDLIEGKDAQFKTESQQAA
AARDSPSTSSRKTRQTAGKQESFLPTLGPNHLDAVPAGTPISRHRVGQKR
VKTFPTCYDDHDMAAIHEAAKQNEELIPIRLDIEVDGQKLRDTFTWNKNE
KLITLESFAEVLCDDLDLPTQSFVPLIVTNMQQQIKQHGVESEITLSEMT
DQRVVIKLNLHVGNVSLQDQFEWDMSDPLNNPEQFALSLCTELGLGGEFV
TAVAYSIRGQLNWNKKTYVFSEHPLPTVEVALRTGMDIDKWCPYLETLTD
AEMEKKLRDQDRNTRRMRRLANTAPYSLQI
Run BLAST on NCBI

transcript from alignment at scaffold_143:156607..164303+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048495 ID=TCONS_00048495|Name=TCONS_00048495|organism=Clytia hemisphaerica|type=transcript|length=7697bp|location=Sequence derived from alignment at scaffold_143:156607..164303+ (Clytia hemisphaerica)
GCGGAACAGAAAAACTATTCCGGGTAAAATGGAATGTCAAGCAGTAGGGC
AGCCATGCACGGAATAAACAAAAAACCAATATTGCGGCAAAATCTGAGTT
GTGAGTTTGGAGAAAAGACCAACATTTTGGAGGTTTGTAAATCTTACCTT
TTATCTGCTTCAAAGACAAGATTTACTGTGGTAAAATTGTACATTTTTCC
TTtggaattgttatttactgttCACTGTTCTATATACTATTTGAGCAATC
TGGCTGGATTCATTATTCATCAGAGGAGACTAAGTAACTACTGAAGTAAC
ACTTTGAAAATGCCACCACTTCAAACATATGGCGAAAAGCCAAAATCTTT
TCAACTGAGTGAGGGTAGCGATGAACTTTTCATGATTGGAAGTGAAGTTG
GAACCTATCTACGGATGATGAGGGGTTCTATTTACAAAAGATATCCCTAT
TTATGGAAACGAATGGCCAGTGGAGAAGAACGTAAAAAGATGCACAAATA
TGCAAACCACCCACTACAAGCACATGTAATGATTGTAAGAGCTAAAGAAA
TTGATGATTTAATTGAAGGGAAAGATGCCCAATTTAAGACCGAAAGTCAA
CAAGCTGCTGCTGCAAGAGATTCACCCTCTACCAGTAGTCGCAAAACAAG
ACAGACTGCTGGAAAACAAGAATCTTTTCTACCAACTCTTGGTCCTAATC
ATTTGGACGCTGTTCCAGCTGGTACACCTATCAGTAGGCATCGTGTTGGC
CAAAAAAGAGTTAAAACATTTCCAACATGGTAAGATTTTATTACAACCGT
CGTGCTTTTTTAGAGCTATAGAGCTTCAGAAGCAGCCAACaagcccattt
ccccgaaatatctgtttcccttttccaggagagagcatttttttgaaaaa
tggggaaaccgatccgattttctaggaaagaaaagaccttttccttaaag
ctatcagtttccccgctccagctgatgacgtcatcagagagaaacatcaa
tatttctaggagatgatataataaattgggaaacagacatctgtttccaa
aagaaatgatattgcattggaaacagattgaactttttgggggaaaacag
atatcaatcacaaaaagcaagggaaacagatgaaaatttccaggagaggg
aaacagatatcctattCCTTAAgcttctagttctagttctagttctattg
aATTATCACATAATACAATATgtacattttcgtgattttaaacataaagg
ataaaataaaattaaaagttaaaaaaaagaaagattgagagaacatatca
acattttaattctgaaaattgtgaaaacagatcaaattttctaaggaaga
tactttgagattaaaaatttagattttgaggagaaacagatgttcatttc
taggaataagatttttgaaaatttggccaacagatcaaatcttccaggaa
ggctatgcctgggaaacagatgtttaaaaaaaggaccTTGCGGGATGCTT
TCGGAGCTTTTAAACAGTTTGTTCTGTGCTCATGGAAGCACTGTTGATGC
TGTGGTTTACACAGCCTTTTTAAAGCagtgtattttttgtttatgtattg
tattttgtcattctttattttattaagaGAAAGGAAAGACGAGGTAAGGA
GGGGAGTAATGATTTAGATTAGAAATAGTTCTTTGATTAATANTcataat
gtgcagcacgaatgaagaaaacattaacatcgaaaatggacgaagaaaag
acggaaaaaggccgttttaacaaatattcccctatagtagggaaatattt
aataagaaGAACTGACAGATTGTAATACAAAATACTAACCTTAGTTGCAA
AGTTCCCGAGTATCAATCTCCTCCTTATATTCTTCTGCAtatgatatttt
ctttattgctaccttttttcaaaaaatgaagacatCAAAGTGTTTTGTTT
ACGAATAGAGCGCGGGAAaatctaaaggccggtctccacttgcgagCGCG
GGAAAATCTAAATCGAACACTCAAACGTTCGAAATtcgaattcgaatgtt
ttggggaattcgaatgttttgaaccgcaaaattcgaatgtttttggaaTG
ACTAAAATAAATTccgaaattcagaaaaaaaatcaaatcaggaCAGGATC
AGGACGCCTGGCATTGAATTGGAAAATGGCAAGAGAAATCTATAATGGAA
AATATCCAACAATATATCTTTTGGAAGAGCATGGCGAAAAGTTCATGCTC
GGAAGTGATGTCGGTGTATTTATGAACTACTACAAAGGTGCTCTTTACAA
GAAATACCCTTCAATGCATCGAAGAATCTTAACATCAGATGAACGAAGTA
TTCTAAGTGGATTGAGTATGAGAAAACACAGGTCTTTAACTAATATGGGG
ACTATGGTAGTGAGAGCTAGCGAAGCCATGAAAATTATGACTGGTCAAGG
AGAGCATTTTCGCAACAAATATACCAAAGCTGCTGCCGAAAATAACGAAG
CAAAGGAAGCTATTAACGTTGCCTTTTGTAGGGCAAGAGCTCAAAGTAAA
GACCTACCTAATCTACGAgagaatttagattttttgccaggtgcaaaaga
aagaaatttggaAGCTATGGCCAGGAGACGTGCAAAACAAGAGACTTGTT
ATGAATTTTGTCCGAAACTATTGAATTTTGCGACTCGTCATGTTGAATAT
GCAGCTGACTTGTGTCCTGAATCGACAGTCATGAATAGCGTCTCTCTGAT
CAACAAACCATCATCTTCCAAATTCTCTGaggacaaaagaaaaagcaaaa
gaacGAACAAAAAGGCGATTGAGAACACAGGAGACAAATCTTCGAttgat
gaaaatgttgaaaatattgaGGATGATAACTTACCACAGAAACCCTTAAA
GAAATGTCCAAGTCATTTGTGGTAAGTTTTTGTCgggtttttgtgttttt
gaaggaaaatactGAAAGGTCTAGAAAAGTGGGAATCCCGGTCTAACTCG
GTCTGATTCCGTAGTTTGGGAATGAGCGGAACAGAAAAACTATTCCGGGT
AAAATGGAATGTCAAGCAGTAGGGCAGCCATGCACGGAATAAACAAAAAA
CCAATATTGCGGCAAAATCTGAGTTGTGAGTTTGGAGAAAAGACCAACAT
TTTGGAGGTTTGTAAATCTTACCTTTTATCTGCTTCAAAGACAAGATTTA
CTGTGGTAAAATTGTACATTTTTCCTTtggaattgttatttactgttCAC
TGTTCTATATACTATTTGAGCAATCTGGCTGGATTCATTATTCATCAGAG
GAGACTAAGTAACTACTGAAGTAACACTTTGAAAATGCCACCACTTCAAA
CATATGGCGAAAAGCCAAAATCTTTTCAACTGAGTGAGGGTAGCGATGAA
CTTTTCATGATTGGAAGTGAAGTTGGAACCTATCTACGGATGATGAGGGG
TTCTATTTACAAAAGATATCCCTATTTATGGAAACGAATGGCCAGTGGAG
AAGAACGTAAAAAGATGCACAAATATGCAAACCACCCACTACAAGCACAT
GTAATGATTGTAAGAGCTAAAGAAATTGATGATTTAATTGAAGGGAAAGA
TGCCCAATTTAAGACCGAAAGTCAACAAGCTGCTGCTGCAAGAGATTCAC
CCTCTACCAGTAGTCGCAAAACAAGACAGACTGCTGGAAAACAAGAATCT
TTTCTACCNAATAGCTAATTTATGTGGAATCAACAATCCTGCCTTTCTTT
TTCTGGTTAACAGAATCAAAAGGATgaaaccagtattttggagcacTGAA
TTTATAGGGGGCTAGAACTCCAGTAAAAGCCATCTGGAATTGCCATACGT
TCAGTAGTGGAtggatattttctttttgtataCATCAGCAGTTAGTTTTT
TGGAAGTTGctaaaaagtctttttttataagttttggAAAATATAGAAAT
GCGCAAAGATTTCTAGAGAATCTTGTCATATTTAAGAAAAGATCGTAGAA
ATGCTATTATTTCATAGAATATCAAACAGACTAACTATTGGTGTAAGTAG
TTTGATTTAGATTGCAATATCTCCacattcagggggggggggtcatgcag
ttattatataaacactatgacaattactaccgtgggggtatataaaccaa
aatttgggaaaacagttactccaccagtggactaactgcaacatgggtgg
tgcctaagcccaaaattgtcgattttggtaggatatggtgtactaagtga
gcacatttttcaatttttcacttaaaattttaagtttttaaaaattccgg
aagcaaaaaaattcaaaacatttttttcaaaagtcaaaaaaaaatcacaa
aaatattttttttcaatcaaggcatgaaagatattttaacaaactttgaa
aatgattgagatatttaactcttgaacggtcgttaataagacgtacccag
taaaatggtatcaaaaatgaggaattcagtgaaaaaattgccaaatttgN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaattgccaaatttg
gcatttttgggggtggtatacaccaattttgagggtaaaatcagttagta
cactatggaataactgcaagggtggtggtgtctgtagaaaatatccaaaa
tcgcagttactccacatagtgtcaaggagtaactgcaagacccccccctg
CCACATTAATAATTTATTAATATTTTGGATATTATCATCTAAGAATTGTT
tgttaaaatttgttaaaattctaaaatgaaaagaaaaatttaactcCTCA
TAGAATCATGCATGGTATAAGTAAGAAGTAGGAAGGCCGCCCTTAAGTGG
TAACCCcttaaaaagaaataattttgaaatgtttgcaCATAATTTATGAA
GTGCCTCTTGTAGTCTTCCTTCCAAACAGCAGTGATTTTGAATCGATATT
CATTAAGCATTTGACTCTTTTAACCTCTTAATTTGTTCCCTTAGTTACGA
TGACCATGACATGGCAGCTATACACGAAGCAGCTAAACAAAATGAAGAAC
TCATCCCAATACGACTCGATATTGAAGTTGATGGGCAGAAACTTCGTGAC
ACATTTACATGgaacaaaaatggtaggtaacAAACAACAAGAAACTATTG
ATTTTTGTaacaacaaaaacaagaaataaCCAGCTAGTTTTTATATTAAC
ATTATAGAATCGGTATAGAATGTTATAATGTGTTAAAGAATCTGTAATTC
TGAAAAGAAAACTCTCTTAgagtatatttgaaaaaatcgcAGTTACCAAC
AAGCTCAGGTTCATTTTCTTTGAGGTTTCGCTTTCAATAAATTTGTTGAC
ATTATCTTCTTGGTGAATACAAGTAAATTCGCCTTTGTTTTCATGCGAAA
CACGGTGATTTTGACTGTAATTGCGACGTTTTAAAATTACCATGTAATTC
TTCTTAGAATTAGCTACACTAACATAGCTGGTCCCTTTAAAGTGAGGCTA
CTGTGCATTGCTTATGGCTTTGTTACCTTTCAGAGTGCTGTTTAGAAGGT
GTTTTACATTTAGACCGATTTGAGACTTGCAAATCTGTTATATTTTGCTG
AGATTTTGAGTCTCCAAATTGGAAAGATACTAAATCTGAACCCAATATAA
AAGTAtgatattaaaaatattaattcTCTCTCTCTTTTCGTTTCCTTTAC
AGAGAAACTGATCACATTGGAATCATTTGCAGAAGTATTATGTGACGATC
TTGATTTACCAACGCAGAGTTTTGTTCCTCTGATCGTCACCAATATGCAG
CAGCAAATCAAACAACATGGTGTAGAATCGGAAATCACGCTCTCTGAAAT
GACTGACCAAAGAGTGGTTATCAAGGTGTGTACTTTTTTTTTTAGGAACC
AATAGATTTGGCTCATCCTCgttctttgtttgcttggttCATTTATTTAT
GGAGACTAAAAGAGTACTTTGATAGCTTTACTTAGCAATAGCCTTACTTT
Agcaatttctgaaatttgaggctcagttcgttctttttttgagaatttgc
tTTGGCTAAATTAAATTtcagccttatgttcttataaaattattttgtag
AAGTTAAAGAATTTTCCTGGCCTGATTTTAAAAGCTTTCTTGAAAAAAAG
AGGGAATTTTGAGATAGCTGAAATGAAGTATCGCTTTCAGTTTGGATTAT
TTATTCGCAAAAGTAATTAAACAACTTGTTTTTTACGTTTTAGTTGAATC
TTCACGTCGGTAATGTTTCGTTACAAGATCAATTCGAATGGGACATGTCA
GATCCTCTAAACAACCCAGAACAATTCGCTCTATCTTTGTGTACAGAACT
CGGTCTAGGTGGTGAATTCGTTACAGCTGTTGCTTACAGTATACGCGGCC
AACTAAACTGGAACAAGAAAACATACGTGTTTAGTGAACATCCTTTACCT
ACAGTTGAAGTTGCCCTTCGCACTGGAATGGATATTGATAAATGGTGTCC
GTATCTCGAAACACTGACAGACGCAGAAATGGAAAAGAAACTGAGAGACC
AAGACAGGAACACAAGGTCTGTAGTTTTGATAATAAATAATTGGGTTTGG
TTTGATTTGCTGTTGCAGCtgagaaaacaaaattgaatgGCTTGATTGAT
AATAAGAGTTTCAATTCCCCAAAATTAGTCTAATTTAGAACGTATTGCTG
CCTCGTCAAAATAAACTCCTTAccaaatttaacattttttagaattttta
ctgTTCGCCAGAATTAGTTCCCTCAAGATAATCCCTAATCACATACCTGC
GTCAATATTTTACGTGAACAATCTGAAATTACTGAAcaaaaaactgtttt
gaaaCGAGGAAACCCCTAGTTTGTAGCTGTAACTTGCGCACTACAGAGAA
GACTTAGATTGGGTAATGGGGTTCTCTATGGGTTCTCCATGGGTTCTCCA
TTTCTCACTTTCATTGATGATTGtctgattttcaatttttttttcaggcg
tATGAGACGTTTAGCGAATACTGCACCCTATTCCTtgcaaatataaacaa
acatgAGTCATCCATCATCGAACCTCTTACATAGAATTGAAGTCAATACT
TGTTGGTGATCATAATTTCATCTACAGGACACTATTTTGTCATTCCGTAT
ATAACAAGCAAATgcaaacaaattaaaaacatgGAACTTATAGATATTAC
ATCGGGTTGTTCGGGAGAGTATCGCTTTACAACCTTAAACCTgtatttcc
ttattttttgaaatggagatttttcatttTACGTATTTACAAAGGAAAAT
GTTGTGGACGTCCTACTCAAATTGAACAGATATTGACGACAAGATGTCAA
GATTagcaagaacaaaagaaaaattgttcCCTAAAAACTGCATTATGCAA
AAGAATAAACCCGTTTTTGGAggattttttaaaagactttCTCAGATTTA
GAGAAATACGTATAGTTTCAATGTATATATCGATTTTTAAAACATAAGTT
AAAGAATATCCATTAAAATGTATTCAAAAAGTGTAAACTGGAAATTTACT
TTGAagaccattttgatttttcagtttTACAGCCGAAAGTACCAAAA

Coding sequence (CDS) from alignment at scaffold_143:156607..164303+

>TCONS_00048495 ID=TCONS_00048495|Name=TCONS_00048495|organism=Clytia hemisphaerica|type=CDS|length=5715bp|location=Sequence derived from alignment at scaffold_143:156607..164303+ (Clytia hemisphaerica)
ATGCCACCACTTCAAACATATGGCGAAAAGCCAAAATCTTTTCAACTGAG
TGAGGGTAGCGATGAACTTTTCATGATTGGAAGTGAAGTTGGAACCTATC
TACGGATGATGAGGGGTTCTATTTACAAAAGATATCCCTATTTATGGAAA
CGAATGGCCAGTGGAGAAGAACGTAAAAAGATGCACAAATATGCAAACCA
CCCACTACAAGCACATGTAATGATTGTAAGAGCTAAAGAAATTGATGATT
TAATTGAAGGGAAAGATGCCCAATTTAAGACCGAAAGTCAACAAGCTGCT
GCTGCAAGAGATTCACCCTCTACCAGTAGTCGCAAAACAAGACAGACTGC
TGGAAAACAAGAATCTTTTCTACCAACTCTTGGTCCTAATCATTTGGACG
CTGTTCCAGCTGGTACACCTATCAGTAGGCATCGTGTTGGCCAAAAAAGA
GTTAAAACATTTCCAACATGTTACGATGACCATGACATGGCAGCTATACA
CGAAGCAGCTAAACAAAATGAAGAACTCATCCCAATACGACTCGATATTG
AAGTTGATGGGCAGAAACTTCGTGACACATTTACATGgaacaaaaatgAG
AAACTGATCACATTGGAATCATTTGCAGAAGTATTATGTGACGATCTTGA
TTTACCAACGCAGAGTTTTGTTCCTCTGATCGTCACCAATATGCAGCAGC
AAATCAAACAACATGGTGTAGAATCGGAAATCACGCTCTCTGAAATGACT
GACCAAAGAGTGGTTATCAAGTTGAATCTTCACGTCGGTAATGTTTCGTT
ACAAGATCAATTCGAATGGGACATGTCAGATCCTCTAAACAACCCAGAAC
AATTCGCTCTATCTTTGTGTACAGAACTCGGTCTAGGTGGTGAATTCGTT
ACAGCTGTTGCTTACAGTATACGCGGCCAACTAAACTGGAACAAGAAAAC
ATACGTGTTTAGTGAACATCCTTTACCTACAGTTGAAGTTGCCCTTCGCA
CTGGAATGGATATTGATAAATGGTGTCCGTATCTCGAAACACTGACAGAC
GCAGAAATGGAAAAGAAACTGAGAGACCAAGACAGGAACACAAGgcgtAT
GAGACGTTTAGCGAATACTGCACCCTATTCCTtgcaaatataaATGCCAC
CACTTCAAACATATGGCGAAAAGCCAAAATCTTTTCAACTGAGTGAGGGT
AGCGATGAACTTTTCATGATTGGAAGTGAAGTTGGAACCTATCTACGGAT
GATGAGGGGTTCTATTTACAAAAGATATCCCTATTTATGGAAACGAATGG
CCAGTGGAGAAGAACGTAAAAAGATGCACAAATATGCAAACCACCCACTA
CAAGCACATGTAATGATTGTAAGAGCTAAAGAAATTGATGATTTAATTGA
AGGGAAAGATGCCCAATTTAAGACCGAAAGTCAACAAGCTGCTGCTGCAA
GAGATTCACCCTCTACCAGTAGTCGCAAAACAAGACAGACTGCTGGAAAA
CAAGAATCTTTTCTACCAACTCTTGGTCCTAATCATTTGGACGCTGTTCC
AGCTGGTACACCTATCAGTAGGCATCGTGTTGGCCAAAAAAGAGTTAAAA
CATTTCCAACATGTTACGATGACCATGACATGGCAGCTATACACGAAGCA
GCTAAACAAAATGAAGAACTCATCCCAATACGACTCGATATTGAAGTTGA
TGGGCAGAAACTTCGTGACACATTTACATGgaacaaaaatgAGAAACTGA
TCACATTGGAATCATTTGCAGAAGTATTATGTGACGATCTTGATTTACCA
ACGCAGAGTTTTGTTCCTCTGATCGTCACCAATATGCAGCAGCAAATCAA
ACAACATGGTGTAGAATCGGAAATCACGCTCTCTGAAATGACTGACCAAA
GAGTGGTTATCAAGTTGAATCTTCACGTCGGTAATGTTTCGTTACAAGAT
CAATTCGAATGGGACATGTCAGATCCTCTAAACAACCCAGAACAATTCGC
TCTATCTTTGTGTACAGAACTCGGTCTAGGTGGTGAATTCGTTACAGCTG
TTGCTTACAGTATACGCGGCCAACTAAACTGGAACAAGAAAACATACGTG
TTTAGTGAACATCCTTTACCTACAGTTGAAGTTGCCCTTCGCACTGGAAT
GGATATTGATAAATGGTGTCCGTATCTCGAAACACTGACAGACGCAGAAA
TGGAAAAGAAACTGAGAGACCAAGACAGGAACACAAGgcgtATGAGACGT
TTAGCGAATACTGCACCCTATTCCTtgcaaatataaATGCCACCACTTCA
AACATATGGCGAAAAGCCAAAATCTTTTCAACTGAGTGAGGGTAGCGATG
AACTTTTCATGATTGGAAGTGAAGTTGGAACCTATCTACGGATGATGAGG
GGTTCTATTTACAAAAGATATCCCTATTTATGGAAACGAATGGCCAGTGG
AGAAGAACGTAAAAAGATGCACAAATATGCAAACCACCCACTACAAGCAC
ATGTAATGATTGTAAGAGCTAAAGAAATTGATGATTTAATTGAAGGGAAA
GATGCCCAATTTAAGACCGAAAGTCAACAAGCTGCTGCTGCAAGAGATTC
ACCCTCTACCAGTAGTCGCAAAACAAGACAGACTGCTGGAAAACAAGAAT
CTTTTCTACCAACTCTTGGTCCTAATCATTTGGACGCTGTTCCAGCTGGT
ACACCTATCAGTAGGCATCGTGTTGGCCAAAAAAGAGTTAAAACATTTCC
AACATGTTACGATGACCATGACATGGCAGCTATACACGAAGCAGCTAAAC
AAAATGAAGAACTCATCCCAATACGACTCGATATTGAAGTTGATGGGCAG
AAACTTCGTGACACATTTACATGgaacaaaaatgAGAAACTGATCACATT
GGAATCATTTGCAGAAGTATTATGTGACGATCTTGATTTACCAACGCAGA
GTTTTGTTCCTCTGATCGTCACCAATATGCAGCAGCAAATCAAACAACAT
GGTGTAGAATCGGAAATCACGCTCTCTGAAATGACTGACCAAAGAGTGGT
TATCAAGTTGAATCTTCACGTCGGTAATGTTTCGTTACAAGATCAATTCG
AATGGGACATGTCAGATCCTCTAAACAACCCAGAACAATTCGCTCTATCT
TTGTGTACAGAACTCGGTCTAGGTGGTGAATTCGTTACAGCTGTTGCTTA
CAGTATACGCGGCCAACTAAACTGGAACAAGAAAACATACGTGTTTAGTG
AACATCCTTTACCTACAGTTGAAGTTGCCCTTCGCACTGGAATGGATATT
GATAAATGGTGTCCGTATCTCGAAACACTGACAGACGCAGAAATGGAAAA
GAAACTGAGAGACCAAGACAGGAACACAAGgcgtATGAGACGTTTAGCGA
ATACTGCACCCTATTCCTtgcaaatataaATGCCACCACTTCAAACATAT
GGCGAAAAGCCAAAATCTTTTCAACTGAGTGAGGGTAGCGATGAACTTTT
CATGATTGGAAGTGAAGTTGGAACCTATCTACGGATGATGAGGGGTTCTA
TTTACAAAAGATATCCCTATTTATGGAAACGAATGGCCAGTGGAGAAGAA
CGTAAAAAGATGCACAAATATGCAAACCACCCACTACAAGCACATGTAAT
GATTGTAAGAGCTAAAGAAATTGATGATTTAATTGAAGGGAAAGATGCCC
AATTTAAGACCGAAAGTCAACAAGCTGCTGCTGCAAGAGATTCACCCTCT
ACCAGTAGTCGCAAAACAAGACAGACTGCTGGAAAACAAGAATCTTTTCT
ACCAACTCTTGGTCCTAATCATTTGGACGCTGTTCCAGCTGGTACACCTA
TCAGTAGGCATCGTGTTGGCCAAAAAAGAGTTAAAACATTTCCAACATGT
TACGATGACCATGACATGGCAGCTATACACGAAGCAGCTAAACAAAATGA
AGAACTCATCCCAATACGACTCGATATTGAAGTTGATGGGCAGAAACTTC
GTGACACATTTACATGgaacaaaaatgAGAAACTGATCACATTGGAATCA
TTTGCAGAAGTATTATGTGACGATCTTGATTTACCAACGCAGAGTTTTGT
TCCTCTGATCGTCACCAATATGCAGCAGCAAATCAAACAACATGGTGTAG
AATCGGAAATCACGCTCTCTGAAATGACTGACCAAAGAGTGGTTATCAAG
TTGAATCTTCACGTCGGTAATGTTTCGTTACAAGATCAATTCGAATGGGA
CATGTCAGATCCTCTAAACAACCCAGAACAATTCGCTCTATCTTTGTGTA
CAGAACTCGGTCTAGGTGGTGAATTCGTTACAGCTGTTGCTTACAGTATA
CGCGGCCAACTAAACTGGAACAAGAAAACATACGTGTTTAGTGAACATCC
TTTACCTACAGTTGAAGTTGCCCTTCGCACTGGAATGGATATTGATAAAT
GGTGTCCGTATCTCGAAACACTGACAGACGCAGAAATGGAAAAGAAACTG
AGAGACCAAGACAGGAACACAAGgcgtATGAGACGTTTAGCGAATACTGC
ACCCTATTCCTtgcaaatataaATGCCACCACTTCAAACATATGGCGAAA
AGCCAAAATCTTTTCAACTGAGTGAGGGTAGCGATGAACTTTTCATGATT
GGAAGTGAAGTTGGAACCTATCTACGGATGATGAGGGGTTCTATTTACAA
AAGATATCCCTATTTATGGAAACGAATGGCCAGTGGAGAAGAACGTAAAA
AGATGCACAAATATGCAAACCACCCACTACAAGCACATGTAATGATTGTA
AGAGCTAAAGAAATTGATGATTTAATTGAAGGGAAAGATGCCCAATTTAA
GACCGAAAGTCAACAAGCTGCTGCTGCAAGAGATTCACCCTCTACCAGTA
GTCGCAAAACAAGACAGACTGCTGGAAAACAAGAATCTTTTCTACCAACT
CTTGGTCCTAATCATTTGGACGCTGTTCCAGCTGGTACACCTATCAGTAG
GCATCGTGTTGGCCAAAAAAGAGTTAAAACATTTCCAACATGTTACGATG
ACCATGACATGGCAGCTATACACGAAGCAGCTAAACAAAATGAAGAACTC
ATCCCAATACGACTCGATATTGAAGTTGATGGGCAGAAACTTCGTGACAC
ATTTACATGgaacaaaaatgAGAAACTGATCACATTGGAATCATTTGCAG
AAGTATTATGTGACGATCTTGATTTACCAACGCAGAGTTTTGTTCCTCTG
ATCGTCACCAATATGCAGCAGCAAATCAAACAACATGGTGTAGAATCGGA
AATCACGCTCTCTGAAATGACTGACCAAAGAGTGGTTATCAAGTTGAATC
TTCACGTCGGTAATGTTTCGTTACAAGATCAATTCGAATGGGACATGTCA
GATCCTCTAAACAACCCAGAACAATTCGCTCTATCTTTGTGTACAGAACT
CGGTCTAGGTGGTGAATTCGTTACAGCTGTTGCTTACAGTATACGCGGCC
AACTAAACTGGAACAAGAAAACATACGTGTTTAGTGAACATCCTTTACCT
ACAGTTGAAGTTGCCCTTCGCACTGGAATGGATATTGATAAATGGTGTCC
GTATCTCGAAACACTGACAGACGCAGAAATGGAAAAGAAACTGAGAGACC
AAGACAGGAACACAAGgcgtATGAGACGTTTAGCGAATACTGCACCCTAT
TCCTtgcaaatataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030845XLOC_030845Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048495-exon-scaffold_143-1491911889:156607..157385TCONS_00048495-exon-scaffold_143-1491911889:156607..157385Clytia hemisphaericaexon
TCONS_00048495-exon-scaffold_143-1510915933:156607..157385TCONS_00048495-exon-scaffold_143-1510915933:156607..157385Clytia hemisphaericaexon
TCONS_00048495-exon-scaffold_143-1575043694:156607..157385TCONS_00048495-exon-scaffold_143-1575043694:156607..157385Clytia hemisphaericaexon
TCONS_00048495-exon-scaffold_143-1491911889:161701..161828TCONS_00048495-exon-scaffold_143-1491911889:161701..161828Clytia hemisphaericaexon
TCONS_00048495-exon-scaffold_143-1510915933:161701..161828TCONS_00048495-exon-scaffold_143-1510915933:161701..161828Clytia hemisphaericaexon
TCONS_00048495-exon-scaffold_143-1575043694:161701..161828TCONS_00048495-exon-scaffold_143-1575043694:161701..161828Clytia hemisphaericaexon
TCONS_00048495-exon-scaffold_143-1491911889:162409..162581TCONS_00048495-exon-scaffold_143-1491911889:162409..162581Clytia hemisphaericaexon
TCONS_00048495-exon-scaffold_143-1510915933:162409..162581TCONS_00048495-exon-scaffold_143-1510915933:162409..162581Clytia hemisphaericaexon
TCONS_00048495-exon-scaffold_143-1575043694:162409..162581TCONS_00048495-exon-scaffold_143-1575043694:162409..162581Clytia hemisphaericaexon
TCONS_00048495-exon-scaffold_143-1491911889:162950..163272TCONS_00048495-exon-scaffold_143-1491911889:162950..163272Clytia hemisphaericaexon
TCONS_00048495-exon-scaffold_143-1510915933:162950..163272TCONS_00048495-exon-scaffold_143-1510915933:162950..163272Clytia hemisphaericaexon
TCONS_00048495-exon-scaffold_143-1575043694:162950..163272TCONS_00048495-exon-scaffold_143-1575043694:162950..163272Clytia hemisphaericaexon
TCONS_00048495-exon-scaffold_143-1491911889:163704..164303TCONS_00048495-exon-scaffold_143-1491911889:163704..164303Clytia hemisphaericaexon
TCONS_00048495-exon-scaffold_143-1510915933:163704..164303TCONS_00048495-exon-scaffold_143-1510915933:163704..164303Clytia hemisphaericaexon
TCONS_00048495-exon-scaffold_143-1575043694:163704..164303TCONS_00048495-exon-scaffold_143-1575043694:163704..164303Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
SWI/SNEF class chromatin regulator proteinTCONS_00048495-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:156607..164303 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.6531	34.7121	67.0839	68.1284	79.5262	61.6204	54.4601	60.1964	37.8455	39.1576	28.4104	25.3402	19.6495	18.1388	21.4256	21.4263	41.152	36.7168	9.77527	10.9771	27.0744	25.9642	33.1501	32.076	42.4011	44.5311	14.67	10.042	21.5545	23.4366
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006939SNF5
IPR017393Sfh1/SNF5
Vocabulary: Cellular Component
TermDefinition
GO:0000228nuclear chromosome
Vocabulary: Biological Process
TermDefinition
GO:0006338chromatin remodeling
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006338 chromatin remodeling
cellular_component GO:0000228 nuclear chromosome
Blast
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BLAST of TCONS_00048495 vs. Swiss-Prot (Human)
Match: SNF5 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Homo sapiens GN=SMARCB1 PE=1 SV=2)

HSP 1 Score: 422.55 bits (1085), Expect = 1.662e-141
Identity = 223/387 (57.62%), Postives = 286/387 (73.90%), Query Frame = 1 
Query:  322 QTYGEKPKSFQLSEGSDELFMIGSEVGTYLRMMRGSIYKRYPYLWKRMASGEERKKM----HKYANHP---------LQAHVMIVRAKEIDDLIEGKDAQFKTESQQAAAARDSPSTSSRKTRQTAGKQESFLPTLGPN---HLDAVPAGTPISRHRVGQKRVKTFPTCYDDHDMAAIHEAAKQNEELIPIRLDIEVDGQKLRDTFTWNKNEKLITLESFAEVLCDDLDLPTQSFVPLIVTNMQQQIKQHGVESEITLSEMTDQRVVIKLNLHVGNVSLQDQFEWDMSDPLNNPEQFALSLCTELGLGGEFVTAVAYSIRGQLNWNKKTYVFSEHPLPTVEVALRTGMDIDKWCPYLETLTDAEMEKKLXXXXXXXXXXXXLANTAP 1434
            +T+G+KP  FQL E   E +MIGSEVG YLRM RGS+YKRYP LW+R+A+ EERKK+    H     P         L   V +++A E++++++G D ++K     A +    P T  R+  Q A +   ++PTL PN   HLDAVP  T I+R+R+G+ + +TFP C+DDHD A IHE A Q E L+PIRLD+E+DGQKLRD FTWN NEKL+T E F+E+LCDDLDL   +FVP I + ++QQI+ +  +S   L + +DQRV+IKLN+HVGN+SL DQFEWDMS+  N+PE+FAL LC+ELGLGGEFVT +AYSIRGQL+W++KTY FSE+PLPTVE+A+R   D D+WCP LETLTDAEMEKK+RDQDRNTRRMRRLANTAP
Sbjct:    8 KTFGQKPVKFQL-EDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYK-----AVSISTEPPTYLRE--QKAKRNSQWVPTL-PNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQIESYPTDS--ILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAP 383
The following BLAST results are available for this feature:
BLAST of TCONS_00048495 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNF51.662e-14157.62SWI/SNF-related matrix-associated actin-dependent ... [more]
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