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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048495 ID=TCONS_00048495|Name=TCONS_00048495|organism=Clytia hemisphaerica|type=transcript|length=2003bp
GCGGAACAGAAAAACTATTCCGGGTAAAATGGAATGTCAAGCAGTAGGGC
AGCCATGCACGGAATAAACAAAAAACCAATATTGCGGCAAAATCTGAGTT
GTGAGTTTGGAGAAAAGACCAACATTTTGGAGGTTTGTAAATCTTACCTT
TTATCTGCTTCAAAGACAAGATTTACTGTGGTAAAATTGTACATTTTTCC
TTtggaattgttatttactgttCACTGTTCTATATACTATTTGAGCAATC
TGGCTGGATTCATTATTCATCAGAGGAGACTAAGTAACTACTGAAGTAAC
ACTTTGAAAATGCCACCACTTCAAACATATGGCGAAAAGCCAAAATCTTT
TCAACTGAGTGAGGGTAGCGATGAACTTTTCATGATTGGAAGTGAAGTTG
GAACCTATCTACGGATGATGAGGGGTTCTATTTACAAAAGATATCCCTAT
TTATGGAAACGAATGGCCAGTGGAGAAGAACGTAAAAAGATGCACAAATA
TGCAAACCACCCACTACAAGCACATGTAATGATTGTAAGAGCTAAAGAAA
TTGATGATTTAATTGAAGGGAAAGATGCCCAATTTAAGACCGAAAGTCAA
CAAGCTGCTGCTGCAAGAGATTCACCCTCTACCAGTAGTCGCAAAACAAG
ACAGACTGCTGGAAAACAAGAATCTTTTCTACCAACTCTTGGTCCTAATC
ATTTGGACGCTGTTCCAGCTGGTACACCTATCAGTAGGCATCGTGTTGGC
CAAAAAAGAGTTAAAACATTTCCAACATGTTACGATGACCATGACATGGC
AGCTATACACGAAGCAGCTAAACAAAATGAAGAACTCATCCCAATACGAC
TCGATATTGAAGTTGATGGGCAGAAACTTCGTGACACATTTACATGgaac
aaaaatgAGAAACTGATCACATTGGAATCATTTGCAGAAGTATTATGTGA
CGATCTTGATTTACCAACGCAGAGTTTTGTTCCTCTGATCGTCACCAATA
TGCAGCAGCAAATCAAACAACATGGTGTAGAATCGGAAATCACGCTCTCT
GAAATGACTGACCAAAGAGTGGTTATCAAGTTGAATCTTCACGTCGGTAA
TGTTTCGTTACAAGATCAATTCGAATGGGACATGTCAGATCCTCTAAACA
ACCCAGAACAATTCGCTCTATCTTTGTGTACAGAACTCGGTCTAGGTGGT
GAATTCGTTACAGCTGTTGCTTACAGTATACGCGGCCAACTAAACTGGAA
CAAGAAAACATACGTGTTTAGTGAACATCCTTTACCTACAGTTGAAGTTG
CCCTTCGCACTGGAATGGATATTGATAAATGGTGTCCGTATCTCGAAACA
CTGACAGACGCAGAAATGGAAAAGAAACTGAGAGACCAAGACAGGAACAC
AAGgcgtATGAGACGTTTAGCGAATACTGCACCCTATTCCTtgcaaatat
aaacaaacatgAGTCATCCATCATCGAACCTCTTACATAGAATTGAAGTC
AATACTTGTTGGTGATCATAATTTCATCTACAGGACACTATTTTGTCATT
CCGTATATAACAAGCAAATgcaaacaaattaaaaacatgGAACTTATAGA
TATTACATCGGGTTGTTCGGGAGAGTATCGCTTTACAACCTTAAACCTgt
atttccttattttttgaaatggagatttttcatttTACGTATTTACAAAG
GAAAATGTTGTGGACGTCCTACTCAAATTGAACAGATATTGACGACAAGA
TGTCAAGATTagcaagaacaaaagaaaaattgttcCCTAAAAACTGCATT
ATGCAAAAGAATAAACCCGTTTTTGGAggattttttaaaagactttCTCA
GATTTAGAGAAATACGTATAGTTTCAATGTATATATCGATTTTTAAAACA
TAAGTTAAAGAATATCCATTAAAATGTATTCAAAAAGTGTAAACTGGAAA
TTTACTTTGAagaccattttgatttttcagtttTACAGCCGAAAGTACCA
AAA Run BLAST on NCBI protein sequence of SWI/SNEF class chromatin regulator protein >TCONS_00048495-protein ID=TCONS_00048495-protein|Name=SWI/SNEF class chromatin regulator protein|organism=Clytia hemisphaerica|type=polypeptide|length=380bp
MPPLQTYGEKPKSFQLSEGSDELFMIGSEVGTYLRMMRGSIYKRYPYLWK
RMASGEERKKMHKYANHPLQAHVMIVRAKEIDDLIEGKDAQFKTESQQAA
AARDSPSTSSRKTRQTAGKQESFLPTLGPNHLDAVPAGTPISRHRVGQKR
VKTFPTCYDDHDMAAIHEAAKQNEELIPIRLDIEVDGQKLRDTFTWNKNE
KLITLESFAEVLCDDLDLPTQSFVPLIVTNMQQQIKQHGVESEITLSEMT
DQRVVIKLNLHVGNVSLQDQFEWDMSDPLNNPEQFALSLCTELGLGGEFV
TAVAYSIRGQLNWNKKTYVFSEHPLPTVEVALRTGMDIDKWCPYLETLTD
AEMEKKLRDQDRNTRRMRRLANTAPYSLQI Run BLAST on NCBI transcript from alignment at scaffold_143:156607..164303+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048495 ID=TCONS_00048495|Name=TCONS_00048495|organism=Clytia hemisphaerica|type=transcript|length=7697bp|location=Sequence derived from alignment at scaffold_143:156607..164303+ (Clytia hemisphaerica)
GCGGAACAGAAAAACTATTCCGGGTAAAATGGAATGTCAAGCAGTAGGGC
AGCCATGCACGGAATAAACAAAAAACCAATATTGCGGCAAAATCTGAGTT
GTGAGTTTGGAGAAAAGACCAACATTTTGGAGGTTTGTAAATCTTACCTT
TTATCTGCTTCAAAGACAAGATTTACTGTGGTAAAATTGTACATTTTTCC
TTtggaattgttatttactgttCACTGTTCTATATACTATTTGAGCAATC
TGGCTGGATTCATTATTCATCAGAGGAGACTAAGTAACTACTGAAGTAAC
ACTTTGAAAATGCCACCACTTCAAACATATGGCGAAAAGCCAAAATCTTT
TCAACTGAGTGAGGGTAGCGATGAACTTTTCATGATTGGAAGTGAAGTTG
GAACCTATCTACGGATGATGAGGGGTTCTATTTACAAAAGATATCCCTAT
TTATGGAAACGAATGGCCAGTGGAGAAGAACGTAAAAAGATGCACAAATA
TGCAAACCACCCACTACAAGCACATGTAATGATTGTAAGAGCTAAAGAAA
TTGATGATTTAATTGAAGGGAAAGATGCCCAATTTAAGACCGAAAGTCAA
CAAGCTGCTGCTGCAAGAGATTCACCCTCTACCAGTAGTCGCAAAACAAG
ACAGACTGCTGGAAAACAAGAATCTTTTCTACCAACTCTTGGTCCTAATC
ATTTGGACGCTGTTCCAGCTGGTACACCTATCAGTAGGCATCGTGTTGGC
CAAAAAAGAGTTAAAACATTTCCAACATGGTAAGATTTTATTACAACCGT
CGTGCTTTTTTAGAGCTATAGAGCTTCAGAAGCAGCCAACaagcccattt
ccccgaaatatctgtttcccttttccaggagagagcatttttttgaaaaa
tggggaaaccgatccgattttctaggaaagaaaagaccttttccttaaag
ctatcagtttccccgctccagctgatgacgtcatcagagagaaacatcaa
tatttctaggagatgatataataaattgggaaacagacatctgtttccaa
aagaaatgatattgcattggaaacagattgaactttttgggggaaaacag
atatcaatcacaaaaagcaagggaaacagatgaaaatttccaggagaggg
aaacagatatcctattCCTTAAgcttctagttctagttctagttctattg
aATTATCACATAATACAATATgtacattttcgtgattttaaacataaagg
ataaaataaaattaaaagttaaaaaaaagaaagattgagagaacatatca
acattttaattctgaaaattgtgaaaacagatcaaattttctaaggaaga
tactttgagattaaaaatttagattttgaggagaaacagatgttcatttc
taggaataagatttttgaaaatttggccaacagatcaaatcttccaggaa
ggctatgcctgggaaacagatgtttaaaaaaaggaccTTGCGGGATGCTT
TCGGAGCTTTTAAACAGTTTGTTCTGTGCTCATGGAAGCACTGTTGATGC
TGTGGTTTACACAGCCTTTTTAAAGCagtgtattttttgtttatgtattg
tattttgtcattctttattttattaagaGAAAGGAAAGACGAGGTAAGGA
GGGGAGTAATGATTTAGATTAGAAATAGTTCTTTGATTAATANTcataat
gtgcagcacgaatgaagaaaacattaacatcgaaaatggacgaagaaaag
acggaaaaaggccgttttaacaaatattcccctatagtagggaaatattt
aataagaaGAACTGACAGATTGTAATACAAAATACTAACCTTAGTTGCAA
AGTTCCCGAGTATCAATCTCCTCCTTATATTCTTCTGCAtatgatatttt
ctttattgctaccttttttcaaaaaatgaagacatCAAAGTGTTTTGTTT
ACGAATAGAGCGCGGGAAaatctaaaggccggtctccacttgcgagCGCG
GGAAAATCTAAATCGAACACTCAAACGTTCGAAATtcgaattcgaatgtt
ttggggaattcgaatgttttgaaccgcaaaattcgaatgtttttggaaTG
ACTAAAATAAATTccgaaattcagaaaaaaaatcaaatcaggaCAGGATC
AGGACGCCTGGCATTGAATTGGAAAATGGCAAGAGAAATCTATAATGGAA
AATATCCAACAATATATCTTTTGGAAGAGCATGGCGAAAAGTTCATGCTC
GGAAGTGATGTCGGTGTATTTATGAACTACTACAAAGGTGCTCTTTACAA
GAAATACCCTTCAATGCATCGAAGAATCTTAACATCAGATGAACGAAGTA
TTCTAAGTGGATTGAGTATGAGAAAACACAGGTCTTTAACTAATATGGGG
ACTATGGTAGTGAGAGCTAGCGAAGCCATGAAAATTATGACTGGTCAAGG
AGAGCATTTTCGCAACAAATATACCAAAGCTGCTGCCGAAAATAACGAAG
CAAAGGAAGCTATTAACGTTGCCTTTTGTAGGGCAAGAGCTCAAAGTAAA
GACCTACCTAATCTACGAgagaatttagattttttgccaggtgcaaaaga
aagaaatttggaAGCTATGGCCAGGAGACGTGCAAAACAAGAGACTTGTT
ATGAATTTTGTCCGAAACTATTGAATTTTGCGACTCGTCATGTTGAATAT
GCAGCTGACTTGTGTCCTGAATCGACAGTCATGAATAGCGTCTCTCTGAT
CAACAAACCATCATCTTCCAAATTCTCTGaggacaaaagaaaaagcaaaa
gaacGAACAAAAAGGCGATTGAGAACACAGGAGACAAATCTTCGAttgat
gaaaatgttgaaaatattgaGGATGATAACTTACCACAGAAACCCTTAAA
GAAATGTCCAAGTCATTTGTGGTAAGTTTTTGTCgggtttttgtgttttt
gaaggaaaatactGAAAGGTCTAGAAAAGTGGGAATCCCGGTCTAACTCG
GTCTGATTCCGTAGTTTGGGAATGAGCGGAACAGAAAAACTATTCCGGGT
AAAATGGAATGTCAAGCAGTAGGGCAGCCATGCACGGAATAAACAAAAAA
CCAATATTGCGGCAAAATCTGAGTTGTGAGTTTGGAGAAAAGACCAACAT
TTTGGAGGTTTGTAAATCTTACCTTTTATCTGCTTCAAAGACAAGATTTA
CTGTGGTAAAATTGTACATTTTTCCTTtggaattgttatttactgttCAC
TGTTCTATATACTATTTGAGCAATCTGGCTGGATTCATTATTCATCAGAG
GAGACTAAGTAACTACTGAAGTAACACTTTGAAAATGCCACCACTTCAAA
CATATGGCGAAAAGCCAAAATCTTTTCAACTGAGTGAGGGTAGCGATGAA
CTTTTCATGATTGGAAGTGAAGTTGGAACCTATCTACGGATGATGAGGGG
TTCTATTTACAAAAGATATCCCTATTTATGGAAACGAATGGCCAGTGGAG
AAGAACGTAAAAAGATGCACAAATATGCAAACCACCCACTACAAGCACAT
GTAATGATTGTAAGAGCTAAAGAAATTGATGATTTAATTGAAGGGAAAGA
TGCCCAATTTAAGACCGAAAGTCAACAAGCTGCTGCTGCAAGAGATTCAC
CCTCTACCAGTAGTCGCAAAACAAGACAGACTGCTGGAAAACAAGAATCT
TTTCTACCNAATAGCTAATTTATGTGGAATCAACAATCCTGCCTTTCTTT
TTCTGGTTAACAGAATCAAAAGGATgaaaccagtattttggagcacTGAA
TTTATAGGGGGCTAGAACTCCAGTAAAAGCCATCTGGAATTGCCATACGT
TCAGTAGTGGAtggatattttctttttgtataCATCAGCAGTTAGTTTTT
TGGAAGTTGctaaaaagtctttttttataagttttggAAAATATAGAAAT
GCGCAAAGATTTCTAGAGAATCTTGTCATATTTAAGAAAAGATCGTAGAA
ATGCTATTATTTCATAGAATATCAAACAGACTAACTATTGGTGTAAGTAG
TTTGATTTAGATTGCAATATCTCCacattcagggggggggggtcatgcag
ttattatataaacactatgacaattactaccgtgggggtatataaaccaa
aatttgggaaaacagttactccaccagtggactaactgcaacatgggtgg
tgcctaagcccaaaattgtcgattttggtaggatatggtgtactaagtga
gcacatttttcaatttttcacttaaaattttaagtttttaaaaattccgg
aagcaaaaaaattcaaaacatttttttcaaaagtcaaaaaaaaatcacaa
aaatattttttttcaatcaaggcatgaaagatattttaacaaactttgaa
aatgattgagatatttaactcttgaacggtcgttaataagacgtacccag
taaaatggtatcaaaaatgaggaattcagtgaaaaaattgccaaatttgN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaattgccaaatttg
gcatttttgggggtggtatacaccaattttgagggtaaaatcagttagta
cactatggaataactgcaagggtggtggtgtctgtagaaaatatccaaaa
tcgcagttactccacatagtgtcaaggagtaactgcaagacccccccctg
CCACATTAATAATTTATTAATATTTTGGATATTATCATCTAAGAATTGTT
tgttaaaatttgttaaaattctaaaatgaaaagaaaaatttaactcCTCA
TAGAATCATGCATGGTATAAGTAAGAAGTAGGAAGGCCGCCCTTAAGTGG
TAACCCcttaaaaagaaataattttgaaatgtttgcaCATAATTTATGAA
GTGCCTCTTGTAGTCTTCCTTCCAAACAGCAGTGATTTTGAATCGATATT
CATTAAGCATTTGACTCTTTTAACCTCTTAATTTGTTCCCTTAGTTACGA
TGACCATGACATGGCAGCTATACACGAAGCAGCTAAACAAAATGAAGAAC
TCATCCCAATACGACTCGATATTGAAGTTGATGGGCAGAAACTTCGTGAC
ACATTTACATGgaacaaaaatggtaggtaacAAACAACAAGAAACTATTG
ATTTTTGTaacaacaaaaacaagaaataaCCAGCTAGTTTTTATATTAAC
ATTATAGAATCGGTATAGAATGTTATAATGTGTTAAAGAATCTGTAATTC
TGAAAAGAAAACTCTCTTAgagtatatttgaaaaaatcgcAGTTACCAAC
AAGCTCAGGTTCATTTTCTTTGAGGTTTCGCTTTCAATAAATTTGTTGAC
ATTATCTTCTTGGTGAATACAAGTAAATTCGCCTTTGTTTTCATGCGAAA
CACGGTGATTTTGACTGTAATTGCGACGTTTTAAAATTACCATGTAATTC
TTCTTAGAATTAGCTACACTAACATAGCTGGTCCCTTTAAAGTGAGGCTA
CTGTGCATTGCTTATGGCTTTGTTACCTTTCAGAGTGCTGTTTAGAAGGT
GTTTTACATTTAGACCGATTTGAGACTTGCAAATCTGTTATATTTTGCTG
AGATTTTGAGTCTCCAAATTGGAAAGATACTAAATCTGAACCCAATATAA
AAGTAtgatattaaaaatattaattcTCTCTCTCTTTTCGTTTCCTTTAC
AGAGAAACTGATCACATTGGAATCATTTGCAGAAGTATTATGTGACGATC
TTGATTTACCAACGCAGAGTTTTGTTCCTCTGATCGTCACCAATATGCAG
CAGCAAATCAAACAACATGGTGTAGAATCGGAAATCACGCTCTCTGAAAT
GACTGACCAAAGAGTGGTTATCAAGGTGTGTACTTTTTTTTTTAGGAACC
AATAGATTTGGCTCATCCTCgttctttgtttgcttggttCATTTATTTAT
GGAGACTAAAAGAGTACTTTGATAGCTTTACTTAGCAATAGCCTTACTTT
Agcaatttctgaaatttgaggctcagttcgttctttttttgagaatttgc
tTTGGCTAAATTAAATTtcagccttatgttcttataaaattattttgtag
AAGTTAAAGAATTTTCCTGGCCTGATTTTAAAAGCTTTCTTGAAAAAAAG
AGGGAATTTTGAGATAGCTGAAATGAAGTATCGCTTTCAGTTTGGATTAT
TTATTCGCAAAAGTAATTAAACAACTTGTTTTTTACGTTTTAGTTGAATC
TTCACGTCGGTAATGTTTCGTTACAAGATCAATTCGAATGGGACATGTCA
GATCCTCTAAACAACCCAGAACAATTCGCTCTATCTTTGTGTACAGAACT
CGGTCTAGGTGGTGAATTCGTTACAGCTGTTGCTTACAGTATACGCGGCC
AACTAAACTGGAACAAGAAAACATACGTGTTTAGTGAACATCCTTTACCT
ACAGTTGAAGTTGCCCTTCGCACTGGAATGGATATTGATAAATGGTGTCC
GTATCTCGAAACACTGACAGACGCAGAAATGGAAAAGAAACTGAGAGACC
AAGACAGGAACACAAGGTCTGTAGTTTTGATAATAAATAATTGGGTTTGG
TTTGATTTGCTGTTGCAGCtgagaaaacaaaattgaatgGCTTGATTGAT
AATAAGAGTTTCAATTCCCCAAAATTAGTCTAATTTAGAACGTATTGCTG
CCTCGTCAAAATAAACTCCTTAccaaatttaacattttttagaattttta
ctgTTCGCCAGAATTAGTTCCCTCAAGATAATCCCTAATCACATACCTGC
GTCAATATTTTACGTGAACAATCTGAAATTACTGAAcaaaaaactgtttt
gaaaCGAGGAAACCCCTAGTTTGTAGCTGTAACTTGCGCACTACAGAGAA
GACTTAGATTGGGTAATGGGGTTCTCTATGGGTTCTCCATGGGTTCTCCA
TTTCTCACTTTCATTGATGATTGtctgattttcaatttttttttcaggcg
tATGAGACGTTTAGCGAATACTGCACCCTATTCCTtgcaaatataaacaa
acatgAGTCATCCATCATCGAACCTCTTACATAGAATTGAAGTCAATACT
TGTTGGTGATCATAATTTCATCTACAGGACACTATTTTGTCATTCCGTAT
ATAACAAGCAAATgcaaacaaattaaaaacatgGAACTTATAGATATTAC
ATCGGGTTGTTCGGGAGAGTATCGCTTTACAACCTTAAACCTgtatttcc
ttattttttgaaatggagatttttcatttTACGTATTTACAAAGGAAAAT
GTTGTGGACGTCCTACTCAAATTGAACAGATATTGACGACAAGATGTCAA
GATTagcaagaacaaaagaaaaattgttcCCTAAAAACTGCATTATGCAA
AAGAATAAACCCGTTTTTGGAggattttttaaaagactttCTCAGATTTA
GAGAAATACGTATAGTTTCAATGTATATATCGATTTTTAAAACATAAGTT
AAAGAATATCCATTAAAATGTATTCAAAAAGTGTAAACTGGAAATTTACT
TTGAagaccattttgatttttcagtttTACAGCCGAAAGTACCAAAA Coding sequence (CDS) from alignment at scaffold_143:156607..164303+ >TCONS_00048495 ID=TCONS_00048495|Name=TCONS_00048495|organism=Clytia hemisphaerica|type=CDS|length=5715bp|location=Sequence derived from alignment at scaffold_143:156607..164303+ (Clytia hemisphaerica)
ATGCCACCACTTCAAACATATGGCGAAAAGCCAAAATCTTTTCAACTGAG
TGAGGGTAGCGATGAACTTTTCATGATTGGAAGTGAAGTTGGAACCTATC
TACGGATGATGAGGGGTTCTATTTACAAAAGATATCCCTATTTATGGAAA
CGAATGGCCAGTGGAGAAGAACGTAAAAAGATGCACAAATATGCAAACCA
CCCACTACAAGCACATGTAATGATTGTAAGAGCTAAAGAAATTGATGATT
TAATTGAAGGGAAAGATGCCCAATTTAAGACCGAAAGTCAACAAGCTGCT
GCTGCAAGAGATTCACCCTCTACCAGTAGTCGCAAAACAAGACAGACTGC
TGGAAAACAAGAATCTTTTCTACCAACTCTTGGTCCTAATCATTTGGACG
CTGTTCCAGCTGGTACACCTATCAGTAGGCATCGTGTTGGCCAAAAAAGA
GTTAAAACATTTCCAACATGTTACGATGACCATGACATGGCAGCTATACA
CGAAGCAGCTAAACAAAATGAAGAACTCATCCCAATACGACTCGATATTG
AAGTTGATGGGCAGAAACTTCGTGACACATTTACATGgaacaaaaatgAG
AAACTGATCACATTGGAATCATTTGCAGAAGTATTATGTGACGATCTTGA
TTTACCAACGCAGAGTTTTGTTCCTCTGATCGTCACCAATATGCAGCAGC
AAATCAAACAACATGGTGTAGAATCGGAAATCACGCTCTCTGAAATGACT
GACCAAAGAGTGGTTATCAAGTTGAATCTTCACGTCGGTAATGTTTCGTT
ACAAGATCAATTCGAATGGGACATGTCAGATCCTCTAAACAACCCAGAAC
AATTCGCTCTATCTTTGTGTACAGAACTCGGTCTAGGTGGTGAATTCGTT
ACAGCTGTTGCTTACAGTATACGCGGCCAACTAAACTGGAACAAGAAAAC
ATACGTGTTTAGTGAACATCCTTTACCTACAGTTGAAGTTGCCCTTCGCA
CTGGAATGGATATTGATAAATGGTGTCCGTATCTCGAAACACTGACAGAC
GCAGAAATGGAAAAGAAACTGAGAGACCAAGACAGGAACACAAGgcgtAT
GAGACGTTTAGCGAATACTGCACCCTATTCCTtgcaaatataaATGCCAC
CACTTCAAACATATGGCGAAAAGCCAAAATCTTTTCAACTGAGTGAGGGT
AGCGATGAACTTTTCATGATTGGAAGTGAAGTTGGAACCTATCTACGGAT
GATGAGGGGTTCTATTTACAAAAGATATCCCTATTTATGGAAACGAATGG
CCAGTGGAGAAGAACGTAAAAAGATGCACAAATATGCAAACCACCCACTA
CAAGCACATGTAATGATTGTAAGAGCTAAAGAAATTGATGATTTAATTGA
AGGGAAAGATGCCCAATTTAAGACCGAAAGTCAACAAGCTGCTGCTGCAA
GAGATTCACCCTCTACCAGTAGTCGCAAAACAAGACAGACTGCTGGAAAA
CAAGAATCTTTTCTACCAACTCTTGGTCCTAATCATTTGGACGCTGTTCC
AGCTGGTACACCTATCAGTAGGCATCGTGTTGGCCAAAAAAGAGTTAAAA
CATTTCCAACATGTTACGATGACCATGACATGGCAGCTATACACGAAGCA
GCTAAACAAAATGAAGAACTCATCCCAATACGACTCGATATTGAAGTTGA
TGGGCAGAAACTTCGTGACACATTTACATGgaacaaaaatgAGAAACTGA
TCACATTGGAATCATTTGCAGAAGTATTATGTGACGATCTTGATTTACCA
ACGCAGAGTTTTGTTCCTCTGATCGTCACCAATATGCAGCAGCAAATCAA
ACAACATGGTGTAGAATCGGAAATCACGCTCTCTGAAATGACTGACCAAA
GAGTGGTTATCAAGTTGAATCTTCACGTCGGTAATGTTTCGTTACAAGAT
CAATTCGAATGGGACATGTCAGATCCTCTAAACAACCCAGAACAATTCGC
TCTATCTTTGTGTACAGAACTCGGTCTAGGTGGTGAATTCGTTACAGCTG
TTGCTTACAGTATACGCGGCCAACTAAACTGGAACAAGAAAACATACGTG
TTTAGTGAACATCCTTTACCTACAGTTGAAGTTGCCCTTCGCACTGGAAT
GGATATTGATAAATGGTGTCCGTATCTCGAAACACTGACAGACGCAGAAA
TGGAAAAGAAACTGAGAGACCAAGACAGGAACACAAGgcgtATGAGACGT
TTAGCGAATACTGCACCCTATTCCTtgcaaatataaATGCCACCACTTCA
AACATATGGCGAAAAGCCAAAATCTTTTCAACTGAGTGAGGGTAGCGATG
AACTTTTCATGATTGGAAGTGAAGTTGGAACCTATCTACGGATGATGAGG
GGTTCTATTTACAAAAGATATCCCTATTTATGGAAACGAATGGCCAGTGG
AGAAGAACGTAAAAAGATGCACAAATATGCAAACCACCCACTACAAGCAC
ATGTAATGATTGTAAGAGCTAAAGAAATTGATGATTTAATTGAAGGGAAA
GATGCCCAATTTAAGACCGAAAGTCAACAAGCTGCTGCTGCAAGAGATTC
ACCCTCTACCAGTAGTCGCAAAACAAGACAGACTGCTGGAAAACAAGAAT
CTTTTCTACCAACTCTTGGTCCTAATCATTTGGACGCTGTTCCAGCTGGT
ACACCTATCAGTAGGCATCGTGTTGGCCAAAAAAGAGTTAAAACATTTCC
AACATGTTACGATGACCATGACATGGCAGCTATACACGAAGCAGCTAAAC
AAAATGAAGAACTCATCCCAATACGACTCGATATTGAAGTTGATGGGCAG
AAACTTCGTGACACATTTACATGgaacaaaaatgAGAAACTGATCACATT
GGAATCATTTGCAGAAGTATTATGTGACGATCTTGATTTACCAACGCAGA
GTTTTGTTCCTCTGATCGTCACCAATATGCAGCAGCAAATCAAACAACAT
GGTGTAGAATCGGAAATCACGCTCTCTGAAATGACTGACCAAAGAGTGGT
TATCAAGTTGAATCTTCACGTCGGTAATGTTTCGTTACAAGATCAATTCG
AATGGGACATGTCAGATCCTCTAAACAACCCAGAACAATTCGCTCTATCT
TTGTGTACAGAACTCGGTCTAGGTGGTGAATTCGTTACAGCTGTTGCTTA
CAGTATACGCGGCCAACTAAACTGGAACAAGAAAACATACGTGTTTAGTG
AACATCCTTTACCTACAGTTGAAGTTGCCCTTCGCACTGGAATGGATATT
GATAAATGGTGTCCGTATCTCGAAACACTGACAGACGCAGAAATGGAAAA
GAAACTGAGAGACCAAGACAGGAACACAAGgcgtATGAGACGTTTAGCGA
ATACTGCACCCTATTCCTtgcaaatataaATGCCACCACTTCAAACATAT
GGCGAAAAGCCAAAATCTTTTCAACTGAGTGAGGGTAGCGATGAACTTTT
CATGATTGGAAGTGAAGTTGGAACCTATCTACGGATGATGAGGGGTTCTA
TTTACAAAAGATATCCCTATTTATGGAAACGAATGGCCAGTGGAGAAGAA
CGTAAAAAGATGCACAAATATGCAAACCACCCACTACAAGCACATGTAAT
GATTGTAAGAGCTAAAGAAATTGATGATTTAATTGAAGGGAAAGATGCCC
AATTTAAGACCGAAAGTCAACAAGCTGCTGCTGCAAGAGATTCACCCTCT
ACCAGTAGTCGCAAAACAAGACAGACTGCTGGAAAACAAGAATCTTTTCT
ACCAACTCTTGGTCCTAATCATTTGGACGCTGTTCCAGCTGGTACACCTA
TCAGTAGGCATCGTGTTGGCCAAAAAAGAGTTAAAACATTTCCAACATGT
TACGATGACCATGACATGGCAGCTATACACGAAGCAGCTAAACAAAATGA
AGAACTCATCCCAATACGACTCGATATTGAAGTTGATGGGCAGAAACTTC
GTGACACATTTACATGgaacaaaaatgAGAAACTGATCACATTGGAATCA
TTTGCAGAAGTATTATGTGACGATCTTGATTTACCAACGCAGAGTTTTGT
TCCTCTGATCGTCACCAATATGCAGCAGCAAATCAAACAACATGGTGTAG
AATCGGAAATCACGCTCTCTGAAATGACTGACCAAAGAGTGGTTATCAAG
TTGAATCTTCACGTCGGTAATGTTTCGTTACAAGATCAATTCGAATGGGA
CATGTCAGATCCTCTAAACAACCCAGAACAATTCGCTCTATCTTTGTGTA
CAGAACTCGGTCTAGGTGGTGAATTCGTTACAGCTGTTGCTTACAGTATA
CGCGGCCAACTAAACTGGAACAAGAAAACATACGTGTTTAGTGAACATCC
TTTACCTACAGTTGAAGTTGCCCTTCGCACTGGAATGGATATTGATAAAT
GGTGTCCGTATCTCGAAACACTGACAGACGCAGAAATGGAAAAGAAACTG
AGAGACCAAGACAGGAACACAAGgcgtATGAGACGTTTAGCGAATACTGC
ACCCTATTCCTtgcaaatataaATGCCACCACTTCAAACATATGGCGAAA
AGCCAAAATCTTTTCAACTGAGTGAGGGTAGCGATGAACTTTTCATGATT
GGAAGTGAAGTTGGAACCTATCTACGGATGATGAGGGGTTCTATTTACAA
AAGATATCCCTATTTATGGAAACGAATGGCCAGTGGAGAAGAACGTAAAA
AGATGCACAAATATGCAAACCACCCACTACAAGCACATGTAATGATTGTA
AGAGCTAAAGAAATTGATGATTTAATTGAAGGGAAAGATGCCCAATTTAA
GACCGAAAGTCAACAAGCTGCTGCTGCAAGAGATTCACCCTCTACCAGTA
GTCGCAAAACAAGACAGACTGCTGGAAAACAAGAATCTTTTCTACCAACT
CTTGGTCCTAATCATTTGGACGCTGTTCCAGCTGGTACACCTATCAGTAG
GCATCGTGTTGGCCAAAAAAGAGTTAAAACATTTCCAACATGTTACGATG
ACCATGACATGGCAGCTATACACGAAGCAGCTAAACAAAATGAAGAACTC
ATCCCAATACGACTCGATATTGAAGTTGATGGGCAGAAACTTCGTGACAC
ATTTACATGgaacaaaaatgAGAAACTGATCACATTGGAATCATTTGCAG
AAGTATTATGTGACGATCTTGATTTACCAACGCAGAGTTTTGTTCCTCTG
ATCGTCACCAATATGCAGCAGCAAATCAAACAACATGGTGTAGAATCGGA
AATCACGCTCTCTGAAATGACTGACCAAAGAGTGGTTATCAAGTTGAATC
TTCACGTCGGTAATGTTTCGTTACAAGATCAATTCGAATGGGACATGTCA
GATCCTCTAAACAACCCAGAACAATTCGCTCTATCTTTGTGTACAGAACT
CGGTCTAGGTGGTGAATTCGTTACAGCTGTTGCTTACAGTATACGCGGCC
AACTAAACTGGAACAAGAAAACATACGTGTTTAGTGAACATCCTTTACCT
ACAGTTGAAGTTGCCCTTCGCACTGGAATGGATATTGATAAATGGTGTCC
GTATCTCGAAACACTGACAGACGCAGAAATGGAAAAGAAACTGAGAGACC
AAGACAGGAACACAAGgcgtATGAGACGTTTAGCGAATACTGCACCCTAT
TCCTtgcaaatataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048495-exon-scaffold_143-1491911889:156607..157385 | TCONS_00048495-exon-scaffold_143-1491911889:156607..157385 | Clytia hemisphaerica | exon |
| TCONS_00048495-exon-scaffold_143-1510915933:156607..157385 | TCONS_00048495-exon-scaffold_143-1510915933:156607..157385 | Clytia hemisphaerica | exon |
| TCONS_00048495-exon-scaffold_143-1575043694:156607..157385 | TCONS_00048495-exon-scaffold_143-1575043694:156607..157385 | Clytia hemisphaerica | exon |
| TCONS_00048495-exon-scaffold_143-1491911889:161701..161828 | TCONS_00048495-exon-scaffold_143-1491911889:161701..161828 | Clytia hemisphaerica | exon |
| TCONS_00048495-exon-scaffold_143-1510915933:161701..161828 | TCONS_00048495-exon-scaffold_143-1510915933:161701..161828 | Clytia hemisphaerica | exon |
| TCONS_00048495-exon-scaffold_143-1575043694:161701..161828 | TCONS_00048495-exon-scaffold_143-1575043694:161701..161828 | Clytia hemisphaerica | exon |
| TCONS_00048495-exon-scaffold_143-1491911889:162409..162581 | TCONS_00048495-exon-scaffold_143-1491911889:162409..162581 | Clytia hemisphaerica | exon |
| TCONS_00048495-exon-scaffold_143-1510915933:162409..162581 | TCONS_00048495-exon-scaffold_143-1510915933:162409..162581 | Clytia hemisphaerica | exon |
| TCONS_00048495-exon-scaffold_143-1575043694:162409..162581 | TCONS_00048495-exon-scaffold_143-1575043694:162409..162581 | Clytia hemisphaerica | exon |
| TCONS_00048495-exon-scaffold_143-1491911889:162950..163272 | TCONS_00048495-exon-scaffold_143-1491911889:162950..163272 | Clytia hemisphaerica | exon |
| TCONS_00048495-exon-scaffold_143-1510915933:162950..163272 | TCONS_00048495-exon-scaffold_143-1510915933:162950..163272 | Clytia hemisphaerica | exon |
| TCONS_00048495-exon-scaffold_143-1575043694:162950..163272 | TCONS_00048495-exon-scaffold_143-1575043694:162950..163272 | Clytia hemisphaerica | exon |
| TCONS_00048495-exon-scaffold_143-1491911889:163704..164303 | TCONS_00048495-exon-scaffold_143-1491911889:163704..164303 | Clytia hemisphaerica | exon |
| TCONS_00048495-exon-scaffold_143-1510915933:163704..164303 | TCONS_00048495-exon-scaffold_143-1510915933:163704..164303 | Clytia hemisphaerica | exon |
| TCONS_00048495-exon-scaffold_143-1575043694:163704..164303 | TCONS_00048495-exon-scaffold_143-1575043694:163704..164303 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_143 | supercontig | scaffold_143:156607..164303 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0000228 | nuclear chromosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006338 | chromatin remodeling |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006338 |
chromatin remodeling |
| cellular_component |
GO:0000228 |
nuclear chromosome |
Blast
BLAST of TCONS_00048495 vs. Swiss-Prot (Human)
Match: SNF5 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Homo sapiens GN=SMARCB1 PE=1 SV=2) HSP 1 Score: 422.55 bits (1085), Expect = 1.662e-141 Identity = 223/387 (57.62%), Postives = 286/387 (73.90%), Query Frame = 1
Query: 322 QTYGEKPKSFQLSEGSDELFMIGSEVGTYLRMMRGSIYKRYPYLWKRMASGEERKKM----HKYANHP---------LQAHVMIVRAKEIDDLIEGKDAQFKTESQQAAAARDSPSTSSRKTRQTAGKQESFLPTLGPN---HLDAVPAGTPISRHRVGQKRVKTFPTCYDDHDMAAIHEAAKQNEELIPIRLDIEVDGQKLRDTFTWNKNEKLITLESFAEVLCDDLDLPTQSFVPLIVTNMQQQIKQHGVESEITLSEMTDQRVVIKLNLHVGNVSLQDQFEWDMSDPLNNPEQFALSLCTELGLGGEFVTAVAYSIRGQLNWNKKTYVFSEHPLPTVEVALRTGMDIDKWCPYLETLTDAEMEKKLXXXXXXXXXXXXLANTAP 1434
+T+G+KP FQL E E +MIGSEVG YLRM RGS+YKRYP LW+R+A+ EERKK+ H P L V +++A E++++++G D ++K A + P T R+ Q A + ++PTL PN HLDAVP T I+R+R+G+ + +TFP C+DDHD A IHE A Q E L+PIRLD+E+DGQKLRD FTWN NEKL+T E F+E+LCDDLDL +FVP I + ++QQI+ + +S L + +DQRV+IKLN+HVGN+SL DQFEWDMS+ N+PE+FAL LC+ELGLGGEFVT +AYSIRGQL+W++KTY FSE+PLPTVE+A+R D D+WCP LETLTDAEMEKK+RDQDRNTRRMRRLANTAP
Sbjct: 8 KTFGQKPVKFQL-EDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYK-----AVSISTEPPTYLRE--QKAKRNSQWVPTL-PNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQIESYPTDS--ILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAP 383
The following BLAST results are available for this feature:
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