Potassium voltage gated channel protein (polypeptide) - C. hemisphaerica

Overview
NamePotassium voltage gated channel protein
Unique NameTCONS_00048278-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length541

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048278-protein ID=TCONS_00048278-protein|Name=Potassium voltage gated channel protein|organism=Clytia hemisphaerica|type=polypeptide|length=541bp
SFEYFERFFVTRVVLTNVAYRGGFGFVFFYLIFKMHAGQAAGQINVGEVH
IHPAVGARMDEERRLVDGGSKNKSYNDDTRIKIDGDDKKPNELVTFNVSG
RKFITTSHTLYNFPDSLIGTSENRAKLKRTKDGEIFLDRHAIVFESVLTF
YQTGIFEPPSQVNQNIFVGDIKYYELVEEAMQSGLKGFDNKVIPMPERLV
QRKIWTLLEYPDSSFMARIVSMFSLLVIITSIVTFCWETVPEYNTNKVNY
DDLSPGKQLTIKILDDIELFCIVYFTFEIILRFVCSPKKWSFMKDILNII
DIVSILPFYVTLIFSMEGSVSIYFLRAVRLVRVFRVFKLSRHSNEMKILG
IAVRESGRELGVLVFFILLAVLLFSSAVYYAEDGVPGTKLVSIPGAFWWS
IVTMTTVGYGDEVPQSIPGRLVGAVCAMTGILVIAMPIPIIVNNFTRQYQ
RLKPASKYWEDFQDTRKLSGEGTDENGKTDRKTSHVIGLYEVDINKNEAK
NATVVSSNHSNHVNGSTTKNNGDVTEIGLPNGKVEIAHTAL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030727XLOC_030727Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048278TCONS_00048278Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR003968K_chnl_volt-dep_Kv
IPR003972K_chnl_volt-dep_Kv1
IPR003131T1-type_BTB
IPR005821Ion_trans_dom
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0051260protein homooligomerization
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 292..312
score: 54.74
coord: 266..289
score: 42.57
coord: 134..153
score: 45.98
coord: 330..356
score: 51.16
coord: 211..239
score: 42.13
coord: 390..412
score: 67.5
coord: 419..445
score: 56.17
coord: 359..382
score: 52.32
IPR003968Potassium channel, voltage dependent, KvPRINTSPR01491KVCHANNELcoord: 134..144
score: 49.85
coord: 430..441
score: 64.86
coord: 335..343
score: 77.31
coord: 359..373
score: 43.22
IPR003972Potassium channel, voltage dependent, Kv1PRINTSPR01496SHAKERCHANELcoord: 208..224
score: 48.78
coord: 231..242
score: 71.95
NoneNo IPR availableGENE3D1.20.5.110coord: 411..447
e-value: 3.2E-12
score: 45.4
NoneNo IPR availableGENE3D1.10.287.70coord: 359..409
e-value: 1.2E-18
score: 66.5
NoneNo IPR availableGENE3D1.20.120.350coord: 215..358
e-value: 1.6E-31
score: 108.3
NoneNo IPR availableGENE3D3.30.710.10coord: 91..186
e-value: 4.0E-16
score: 58.5
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 212..448
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 94..182
e-value: 4.8E-18
score: 65.2
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 218..451
e-value: 6.1E-43
score: 146.7
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 91..181

Blast
[Close]
BLAST of Potassium voltage gated channel protein vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2)

HSP 1 Score: 317.775 bits (813), Expect = 1.321e-102
Identity = 172/412 (41.75%), Postives = 256/412 (62.14%), Query Frame = 0 
Query:   61 EERRLVDGGSKNKSYNDDTRIKIDGDDKKPNELVTFNVSGRKFITTSHTLYNFPDSLIGTSENRAKLKRTKDGEIFLDRHAIVFESVLTFYQTG-IFEPPSQVNQNIFVGDIKYYELVEEAMQSGLK--GF-DNKVIPMPERLVQRKIWTLLEYPDSSFMARIVSMFSLLVIITSIVTFCWETVPEYNTNKVNYDDLSPGKQLTI----KILDD----IELFCIVYFTFEIILRFVCSPKKWSFMKDILNIIDIVSILPFYVTL---IFSMEG------SVSIYFLRAVRLVRVFRVFKLSRHSNEMKILGIAVRESGRELGVLVFFILLAVLLFSSAVYYAEDGVPGTKLVSIPGAFWWSIVTMTTVGYGDEVPQSIPGRLVGAVCAMTGILVIAMPIPIIVNNFTRQYQR 451
            +E     G  ++ SY      + D DD +  E V  N+SG +F T   TL  FP++L+G  + R +       E F DR+   F+++L +YQ+G     P  V  ++F  +IK+YEL EEAM+   +  GF   +  P+PE+  QR++W L EYP+SS  AR++++ S++VI+ SIV FC ET+PE   +K     +      T+     I  D    +E  CI++F+FE+++RF   P K  F K+I+N IDIV+I+P+++TL   I   EG      + S+  LR +RLVRVFR+FKLSRHS  ++ILG  ++ S RELG+L+FF+ + V+LFSSAVY+AE     +   SIP AFWW++V+MTTVGYGD  P +I G++VG++CA+ G+L IA+P+P+IV+NF   Y R
Sbjct:   10 DEASAAPGHPQDGSYPR----QADHDDHECCERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 417
The following BLAST results are available for this feature:
BLAST of Potassium voltage gated channel protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA11.321e-10241.75Potassium voltage-gated channel subfamily A member... [more]
back to top