TCONS_00048278 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048278
Unique NameTCONS_00048278
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1905

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048278 ID=TCONS_00048278|Name=TCONS_00048278|organism=Clytia hemisphaerica|type=transcript|length=1905bp
tttcatttgaatattttgaaagattttttgtgACACGCGTGGTTTTAACA
AACGTAGCGTATAGGGGAGGTTttggatttgtttttttttatttgatttt
caagaTGCATGCGGGCCAAGCAGCAGGTCAAATTAATGTGGGAGAAGTAC
ATATACATCCTGCCGTAGGCGCGAGGATGGATGAGGAGCGGCGTTTGGTG
GACGGAGGATCAAAGAACAAAAGCTATAATGATGATACCAGAATCAAAAT
TGACGGAGACGATAAAAAGCCGAACGAACTGGTCACTTTTAACGTCAGCG
GTCGTAAATTCATAACAACCAGCCATACGTTATATAATTTCCCCGATTCC
CTTATCGGAACAAGTGAAAACCGCGCTAAATTGAAACGAACCAAAGATGG
GGAGATCTTCTTAGATAGACATGCTATCGTCTTCGAAAGCGTGCTCACGT
TTTATCAGACGGGTATTTTCGAACCACCCTCTCAAgtcaatcaaaatatt
ttcgttgGTGATATCAAATATTATGAACTAGTTGAAGAAGCAATGCAGTC
TGGATTAAAAGGATTTGATAATAAGGTTATACCGATGCCAGAAAGATTAG
TACAGCGTAAAATATGGACATTATTGGAGTACCCTGATTCATCATTCATG
GCAAGAATAGTATCCATGTTTTCTCTGCTGGTTATTATAACTTCAATCGT
AACATTCTGTTGGGAAACTGTACCGGAGTATAATACCAATAAAGTCAATT
ATGATGACCTATCACCTGGTAAACAGTTGACTATAAAGATTCTTGACGAT
ATTGAGTTATTCTGTATCGTCTATTTCACATTTGAGATTATACTGCGATT
CGTATGTTCACCCAAGAAATGGTCATTTatgaaagatattttgaatATCA
TTGATATCGTGTCGATTCTACCGTTTTATGTGACACTCATATTCAGCATG
GAAGGTAGTGTTTCCATATACTTTCTGCGTgccgttcgattggttcgagt
ATTTCGGGTCTTTAAATTATCACGACATtcgaatgaaatgaaaatattgg
gTATAGCTGTTAGAGAAAGTGGACGCGAGCTTGGAGTACTTGTATTCTTT
ATTTTGTTGGCAGTACTTTTATTCTCAAGTGCTGTTTATTATGCGGAAGA
TGGTGTACCAGGCACGAAGTTAGTCTCGATTCCAGGAGCTTTTTGGTGGT
CTATTGTTACTATGACAACAGTGGGATACGGAGACGAAGTTCCACAATCA
ATTCcTGGTCGTTTGGTCGGTGCAGTGTGCGCCATGACAGGTATCCTCGT
GATTGCAATGCCGATTCCTATCATTGTCAATAATTTCACACGACAATATC
AACGATTGAAACCAGCATCAAAATACTGGGAAGATTTTCAAGACACGCGG
AAATTATCCGGTGAGGGTACGGACGAAAACGGAAAAACAGACCGGAAAAC
TAGTCACGTGATTGGATTATATGAAGTAGACATTAATAAAAATGAAGCCA
AAAATGCAACGGTGGTTAGTAGTAACCATAGCAATCATGTAAATGGTAGC
ACAACCAAAAATAATGGTGACGTCACTGAAATCGGTTTACCGAATGGGAA
GGTTGAAATCGCCCATACAGCGCTTTGAGAAAAAGTTTTCGGGCTAAAGA
GAGCAAAAGAGGGGCCAAAATACTTTTTATGGACAATAAGGGTAAAAGAC
ATAGTATTATGGGTACTATTTACCAAAATTTggggaaaagtgaaaaatat
tcaaacTCACGTTCGATATaaagaatatatttattttgataacttttttt
ataaacatttgaATTGATATATATTcgtaatctttaaaaaactttttttt
cgtttagattttttttggagGAATTGACGATGTCAAAACTTTCGACCTCT
GCCTG
Run BLAST on NCBI

protein sequence of Potassium voltage gated channel protein

>TCONS_00048278-protein ID=TCONS_00048278-protein|Name=Potassium voltage gated channel protein|organism=Clytia hemisphaerica|type=polypeptide|length=541bp
SFEYFERFFVTRVVLTNVAYRGGFGFVFFYLIFKMHAGQAAGQINVGEVH
IHPAVGARMDEERRLVDGGSKNKSYNDDTRIKIDGDDKKPNELVTFNVSG
RKFITTSHTLYNFPDSLIGTSENRAKLKRTKDGEIFLDRHAIVFESVLTF
YQTGIFEPPSQVNQNIFVGDIKYYELVEEAMQSGLKGFDNKVIPMPERLV
QRKIWTLLEYPDSSFMARIVSMFSLLVIITSIVTFCWETVPEYNTNKVNY
DDLSPGKQLTIKILDDIELFCIVYFTFEIILRFVCSPKKWSFMKDILNII
DIVSILPFYVTLIFSMEGSVSIYFLRAVRLVRVFRVFKLSRHSNEMKILG
IAVRESGRELGVLVFFILLAVLLFSSAVYYAEDGVPGTKLVSIPGAFWWS
IVTMTTVGYGDEVPQSIPGRLVGAVCAMTGILVIAMPIPIIVNNFTRQYQ
RLKPASKYWEDFQDTRKLSGEGTDENGKTDRKTSHVIGLYEVDINKNEAK
NATVVSSNHSNHVNGSTTKNNGDVTEIGLPNGKVEIAHTAL
Run BLAST on NCBI

transcript from alignment at scaffold_142:185198..190720+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048278 ID=TCONS_00048278|Name=TCONS_00048278|organism=Clytia hemisphaerica|type=transcript|length=5523bp|location=Sequence derived from alignment at scaffold_142:185198..190720+ (Clytia hemisphaerica)
tttcatttgaatattttgaaagattttttgtgACACGCGTGGTTTTAACA
AACGTAGCGTATAGGGGAGGTTttggatttgtttttttttatttgatttt
caagaTGCATGCGGGCCAAGCAGCAGGTCAAATTAATGTGGGAGAAGTAC
ATATACATCCTGCCGGTAAGACAATAATTTGGATATTAGAGATTAAACGT
TGTTCAACTATAAATTACTTTGGTTCGATATAACGAAATGATAAATACAA
CATCCAAGTTTAAACTTCCTTTGCAATGGCCACTATTTTTCTCTCTTACG
CGGGAAATGGTGTTATTTCGAGTTTTCTTAGCTGGTGAGCAAGCGGAACC
TACTACATGTTAAGAGAATCATATTTTTAAGCTAAACTTAACAGATGCTT
GGATCTTAGACAAAATATGATTACGTCAGTTGTATCATTTCTATAGAGCT
CAATAGATAATAGCAAAAAGAAGACTTACTTGTCATTTTCTTTATCCCAA
CATGCGATTTTTGATCACACGGGGTCAAGGAAATATCCGTGGTCGTCTGG
TAGAGGCAAAGACCCTCCAAGGAAGATAACGCTCTTAAACTACATCACAT
TTTGTTGTCTGGTACAGGAAAGCTTGTTTTATGCAAGGATAAAATGAATT
CTATGTATGCAAATCGTCTAACGCATGTGATATGTACCTGAAAAACAAGC
AATgataacaaaattgaaaataaattctagAAATATTTGTCGGTAGGGGT
TGGTAtttatccttccaagaagttttaaAGAGggaaataacttttataga
tcCTTTATCTTGAACAAATTAAACTTTGCGCTCGCCAATTCAGAATGATG
ATATTGCAACACAACCCATCCGACACCAATCAATCCAGAATTGATCGTta
tccaaaaaaaatattttcagtaattaaagCAATCTTCTTCAGTTAGTTAA
AAGAAGAAGGACAAATTCAATTGTTGGATATCAGTTTGTGTCAGCTCTAA
ATTGTGTCTTGACATAGTAAACAGGGGTTATTCATCTGtgtaaaaagcaa
caaaaatctACTTAACAGACGTTTCATCTATCTAACATCATACTAACATC
CAAATTTATTTCAGGTTAAAAGCTGGTCTGAAAACCTTATCTACCGGTCA
ATTAAAAggtaaaaatttatcatttcaTAATGTTACAACCTagaaactaa
ctttttttctttctctttcaaTTTTAGTAGGCGCGAGGATGGATGAGGAG
CGGCGTTTGGTGGACGGAGGATCAAAGAACAAAAGCTATAATGATGATAC
CAGAATCAAAATTGACGGAGACGATAAAAAGCCGAACGAACTGGTCACTT
TTAACGTCAGCGGTCGTAAATTCATAACAACCAGCCATACGTTATATAAT
TTCCCCGATTCCCTTATCGGAACAAGTGAAAACCGCGCTAAATTGAAACG
AACCAAAGATGGGGAGATCTTCTTAGATAGACATGCTATCGTCTTCGAAA
GCGTGCTCACGTTTTATCAGACGGGTATTTTCGAACCACCCTCTCAAgtc
aatcaaaatattttcgttgGTGATATCAAATATTATGAACTAGTTGAAGA
AGCAATGCAGTCTGGATTAAAAGGATTTGATAATAAGGTTATACCGATGC
CAGAAAGATTAGTACAGCGTAAAATATGGACATTATTGGAGTACCCTGAT
TCATCATTCATGGCAAGAATAGTATCCATGTTTTCTCTGCTGGTTATTAT
AACTTCAATCGTAACATTCTGTTGGGAAACTGTACCGGAGTATAATACCA
ATAAAGTCAATTATGATGACCTATCACCTGGTAAACAGTTGACTATAAAG
ATTCTTGACGATATTGAGTTATTCTGTATCGTCTATTTCACATTTGAGAT
TATACTGCGATTCGTATGTTCACCCAAGAAATGGTCATTTatgaaagata
ttttgaatATCATTGATATCGTGTCGATTCTACCGTTTTATGTGACACTC
ATATTCAGCATGGAAGGTAGTGTTTCCATATACTTTCTGCGTgccgttcg
attggttcgagtATTTCGGGTCTTTAAATTATCACGACATtcgaatgaaa
tgaaaatattgggTATAGCTGTTAGAGAAAGTGGACGCGAGCTTGGAGTA
CTTGTATTCTTTATTTTGTTGGCAGTACTTTTATTCTCAAGTGCTGTTTA
TTATGCGGAAGATGGTGTACCAGGCACGAAGTTAGTCTCGATTCCAGGAG
CTTTTTGGTGGTCTATTGTTACTATGACAACAGTGGGATACGGAGACGAA
GTTCCACAATCAATTCGTAAGTAGAATTCCTTTACTTATCGCcaggaggg
gggggggcactcatatggttcGACCTacagtatgtgccgcccttaagggt
aggtttttcgaaatgcactgtaagggtgtacttttgatagagtgcactac
aaAGGTCTTCTTTATGCTGGATACACTGTTagggtgtgtttggggactAC
TGAATTGTAAGTCCGGTTAGtaagattttgatttatatCTTTATAGTTGT
AACtcgcacccattttgatttgttttgcacattgtgccgacatctcaggc
tcattttcaggtggcttcagcaaaataagatatgaaatcaaactacactg
tatgtaagggtcaaaaacattcagtaaaatgcactgtaagggtacctttt
cattGCTCAAtggctgcactgtaagggctcgattttgaaaaccatttttt
tgACAGCACACGCCGTTGTTTAAAAATCGAGTGAATAAATAATCTAAAAT
GGAGTCCAGGATGTTGTTTGTTGTCAAAATTCTCATATATGTTTAAAATA
TCACCGGAGTTTGACCTATTTTCCCTTgaattttgctttatttttctgTC
GGGTAATGAAGTTGATGTTTTCAGAGCTTTTTACGCAATTTTAAAAAGGA
AAGCGGTTACACTAGAGACTCAGAGAGTAGATTATGCTGGAGGATAAAAA
GAATATATACTTCTGAACTAGATGAGCTAGTAAATTGCATGAAAACATTT
CATAGACAAATTAGACCTCATTTGATAGTGGTGCCAAAAATTTCTGGTCC
AAACACAATTAAAGCACACTTCTCACTTTAAGAAAAATTCCAGTCACTCT
ATGAAaccacaaatatcttttttggaatttttccaaACTATCTACAATAT
CTATTGCTTACCGCACTATCGCTCTTATTAAGAACAAATGATAACAGTCT
TTTGTATTCACTTTACCAATTTTCAGATCGTCGCCAGCGAAAAAGAAAtg
aacttaagggctctgaccatagtccaaaaattgattttggtatttgaaca
taaaagttacatttcaggttccttaacacttttaacaaagaaNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNgtgcgcagagtcatttacagatttttcttgtaacaatgaga
agacaatggatctctcttgggagcaacgagagaagttaatccacctattc
taatccgttggtcaaaagttatgagtttttttaagcaaaatccagatgaa
aaattgatgaaaaaccactattttgaagatttcgagacaaacaagcattt
acaaaaattttccgcaaaaatttttattgttcggtaaaagatacaccatc
tattgggaaaagattttcaaaatgttttttcttcgccgaaactaagctct
tcaaagttgaaatactcttcctcgcaaaagtcttcattttcttcttcatc
aaattttttcaatgcaattcttgaattttcagattcaggaatagtttgtc
taacagaaaatgtatgacatgccatagttttattggttacatcagtcaga
aaacacattttaaacacggcaattatgaaaaattcactatggtcagagcc
cttaataggggtggaaaataaaattgatgctctctaattcgacgttctac
tattgaGACGCACCatcattcgataatattgaaaggcACCGTCAACAAGA
TACTCTCACTAACGACGCTCTGCTACCCTTATTCTGTGAACATCcaattt
ctcttgaaaatctACTTAGAGAAAGTCGACTGTAACTTCAAACAAATAAA
AGCGAAATATCGAACGATTACAAATTTTCTACTTAAATAAAGTCTTAAAA
TTGAGGAAATATAAACTTAAAATTCCTGAATTGTTTAATATTTGTCTCAA
TTTAATCGAGAGTCCTGATGTTTTGTTAAATTAGAAAGTTTCTAAGGTgg
aattctttttgtttttttacagcTGGTCGTTTGGTCGGTGCAGTGTGCGC
CATGACAGGTATCCTCGTGATTGCAATGCCGATTCCTATCATTGTCAATA
ATTTCACACGACAATATCAACGATTGAAACCAGCATCAAAATACTGGGAA
GATTTTCAAGACACGCGGAAATTATCCGGTGAGGGTACGGACGAAAACGG
AAAAACAGACCGGAAAACTAGTCACGTGATTGGATTATATGAAGTAGACA
TTAATAAAAATGAAGCCAAAAATGCAACGGTGGTTAGTAGTAACCATAGC
AATCATGTAAATGGTAGCACAACCAAAAATAATGGTGACGTCACTGAAAT
CGGTTTACCGAATGGGAAGGTTGAAATCGCCCATACAGCGCTTTGAGAAA
AAGTTTTCGGGCTAAAGAGAGCAAAAGAGGGGCCAAAATACTTTTTATGG
ACAATAAGGGTAAAAGACATAGTATTATGGGTACTATTTACCAAAATTTg
gggaaaagtgaaaaatattcaaacTCACGTTCGATATaaagaatatattt
attttgataactttttttataaacatttgaATTGATATATATTcgtaatc
tttaaaaaacttttttttcgtttagattttttttggagGAATTGACGATG
TCAAAACTTTCGACCTCTGCCTG

Coding sequence (CDS) from alignment at scaffold_142:185198..190720+

>TCONS_00048278 ID=TCONS_00048278|Name=TCONS_00048278|organism=Clytia hemisphaerica|type=CDS|length=4878bp|location=Sequence derived from alignment at scaffold_142:185198..190720+ (Clytia hemisphaerica)
tcatttgaatattttgaaagattttttgtgACACGCGTGGTTTTAACAAA
CGTAGCGTATAGGGGAGGTTttggatttgtttttttttatttgattttca
agaTGCATGCGGGCCAAGCAGCAGGTCAAATTAATGTGGGAGAAGTACAT
ATACATCCTGCCGTAGGCGCGAGGATGGATGAGGAGCGGCGTTTGGTGGA
CGGAGGATCAAAGAACAAAAGCTATAATGATGATACCAGAATCAAAATTG
ACGGAGACGATAAAAAGCCGAACGAACTGGTCACTTTTAACGTCAGCGGT
CGTAAATTCATAACAACCAGCCATACGTTATATAATTTCCCCGATTCCCT
TATCGGAACAAGTGAAAACCGCGCTAAATTGAAACGAACCAAAGATGGGG
AGATCTTCTTAGATAGACATGCTATCGTCTTCGAAAGCGTGCTCACGTTT
TATCAGACGGGTATTTTCGAACCACCCTCTCAAgtcaatcaaaatatttt
cgttgGTGATATCAAATATTATGAACTAGTTGAAGAAGCAATGCAGTCTG
GATTAAAAGGATTTGATAATAAGGTTATACCGATGCCAGAAAGATTAGTA
CAGCGTAAAATATGGACATTATTGGAGTACCCTGATTCATCATTCATGGC
AAGAATAGTATCCATGTTTTCTCTGCTGGTTATTATAACTTCAATCGTAA
CATTCTGTTGGGAAACTGTACCGGAGTATAATACCAATAAAGTCAATTAT
GATGACCTATCACCTGGTAAACAGTTGACTATAAAGATTCTTGACGATAT
TGAGTTATTCTGTATCGTCTATTTCACATTTGAGATTATACTGCGATTCG
TATGTTCACCCAAGAAATGGTCATTTatgaaagatattttgaatATCATT
GATATCGTGTCGATTCTACCGTTTTATGTGACACTCATATTCAGCATGGA
AGGTAGTGTTTCCATATACTTTCTGCGTgccgttcgattggttcgagtAT
TTCGGGTCTTTAAATTATCACGACATtcgaatgaaatgaaaatattgggT
ATAGCTGTTAGAGAAAGTGGACGCGAGCTTGGAGTACTTGTATTCTTTAT
TTTGTTGGCAGTACTTTTATTCTCAAGTGCTGTTTATTATGCGGAAGATG
GTGTACCAGGCACGAAGTTAGTCTCGATTCCAGGAGCTTTTTGGTGGTCT
ATTGTTACTATGACAACAGTGGGATACGGAGACGAAGTTCCACAATCAAT
TCcTGGTCGTTTGGTCGGTGCAGTGTGCGCCATGACAGGTATCCTCGTGA
TTGCAATGCCGATTCCTATCATTGTCAATAATTTCACACGACAATATCAA
CGATTGAAACCAGCATCAAAATACTGGGAAGATTTTCAAGACACGCGGAA
ATTATCCGGTGAGGGTACGGACGAAAACGGAAAAACAGACCGGAAAACTA
GTCACGTGATTGGATTATATGAAGTAGACATTAATAAAAATGAAGCCAAA
AATGCAACGGTGGTTAGTAGTAACCATAGCAATCATGTAAATGGTAGCAC
AACCAAAAATAATGGTGACGTCACTGAAATCGGTTTACCGAATGGGAAGG
TTGAAATCGCCCATACAGCGCTTTGAtcatttgaatattttgaaagattt
tttgtgACACGCGTGGTTTTAACAAACGTAGCGTATAGGGGAGGTTttgg
atttgtttttttttatttgattttcaagaTGCATGCGGGCCAAGCAGCAG
GTCAAATTAATGTGGGAGAAGTACATATACATCCTGCCGTAGGCGCGAGG
ATGGATGAGGAGCGGCGTTTGGTGGACGGAGGATCAAAGAACAAAAGCTA
TAATGATGATACCAGAATCAAAATTGACGGAGACGATAAAAAGCCGAACG
AACTGGTCACTTTTAACGTCAGCGGTCGTAAATTCATAACAACCAGCCAT
ACGTTATATAATTTCCCCGATTCCCTTATCGGAACAAGTGAAAACCGCGC
TAAATTGAAACGAACCAAAGATGGGGAGATCTTCTTAGATAGACATGCTA
TCGTCTTCGAAAGCGTGCTCACGTTTTATCAGACGGGTATTTTCGAACCA
CCCTCTCAAgtcaatcaaaatattttcgttgGTGATATCAAATATTATGA
ACTAGTTGAAGAAGCAATGCAGTCTGGATTAAAAGGATTTGATAATAAGG
TTATACCGATGCCAGAAAGATTAGTACAGCGTAAAATATGGACATTATTG
GAGTACCCTGATTCATCATTCATGGCAAGAATAGTATCCATGTTTTCTCT
GCTGGTTATTATAACTTCAATCGTAACATTCTGTTGGGAAACTGTACCGG
AGTATAATACCAATAAAGTCAATTATGATGACCTATCACCTGGTAAACAG
TTGACTATAAAGATTCTTGACGATATTGAGTTATTCTGTATCGTCTATTT
CACATTTGAGATTATACTGCGATTCGTATGTTCACCCAAGAAATGGTCAT
TTatgaaagatattttgaatATCATTGATATCGTGTCGATTCTACCGTTT
TATGTGACACTCATATTCAGCATGGAAGGTAGTGTTTCCATATACTTTCT
GCGTgccgttcgattggttcgagtATTTCGGGTCTTTAAATTATCACGAC
ATtcgaatgaaatgaaaatattgggTATAGCTGTTAGAGAAAGTGGACGC
GAGCTTGGAGTACTTGTATTCTTTATTTTGTTGGCAGTACTTTTATTCTC
AAGTGCTGTTTATTATGCGGAAGATGGTGTACCAGGCACGAAGTTAGTCT
CGATTCCAGGAGCTTTTTGGTGGTCTATTGTTACTATGACAACAGTGGGA
TACGGAGACGAAGTTCCACAATCAATTCcTGGTCGTTTGGTCGGTGCAGT
GTGCGCCATGACAGGTATCCTCGTGATTGCAATGCCGATTCCTATCATTG
TCAATAATTTCACACGACAATATCAACGATTGAAACCAGCATCAAAATAC
TGGGAAGATTTTCAAGACACGCGGAAATTATCCGGTGAGGGTACGGACGA
AAACGGAAAAACAGACCGGAAAACTAGTCACGTGATTGGATTATATGAAG
TAGACATTAATAAAAATGAAGCCAAAAATGCAACGGTGGTTAGTAGTAAC
CATAGCAATCATGTAAATGGTAGCACAACCAAAAATAATGGTGACGTCAC
TGAAATCGGTTTACCGAATGGGAAGGTTGAAATCGCCCATACAGCGCTTT
GAtcatttgaatattttgaaagattttttgtgACACGCGTGGTTTTAACA
AACGTAGCGTATAGGGGAGGTTttggatttgtttttttttatttgatttt
caagaTGCATGCGGGCCAAGCAGCAGGTCAAATTAATGTGGGAGAAGTAC
ATATACATCCTGCCGTAGGCGCGAGGATGGATGAGGAGCGGCGTTTGGTG
GACGGAGGATCAAAGAACAAAAGCTATAATGATGATACCAGAATCAAAAT
TGACGGAGACGATAAAAAGCCGAACGAACTGGTCACTTTTAACGTCAGCG
GTCGTAAATTCATAACAACCAGCCATACGTTATATAATTTCCCCGATTCC
CTTATCGGAACAAGTGAAAACCGCGCTAAATTGAAACGAACCAAAGATGG
GGAGATCTTCTTAGATAGACATGCTATCGTCTTCGAAAGCGTGCTCACGT
TTTATCAGACGGGTATTTTCGAACCACCCTCTCAAgtcaatcaaaatatt
ttcgttgGTGATATCAAATATTATGAACTAGTTGAAGAAGCAATGCAGTC
TGGATTAAAAGGATTTGATAATAAGGTTATACCGATGCCAGAAAGATTAG
TACAGCGTAAAATATGGACATTATTGGAGTACCCTGATTCATCATTCATG
GCAAGAATAGTATCCATGTTTTCTCTGCTGGTTATTATAACTTCAATCGT
AACATTCTGTTGGGAAACTGTACCGGAGTATAATACCAATAAAGTCAATT
ATGATGACCTATCACCTGGTAAACAGTTGACTATAAAGATTCTTGACGAT
ATTGAGTTATTCTGTATCGTCTATTTCACATTTGAGATTATACTGCGATT
CGTATGTTCACCCAAGAAATGGTCATTTatgaaagatattttgaatATCA
TTGATATCGTGTCGATTCTACCGTTTTATGTGACACTCATATTCAGCATG
GAAGGTAGTGTTTCCATATACTTTCTGCGTgccgttcgattggttcgagt
ATTTCGGGTCTTTAAATTATCACGACATtcgaatgaaatgaaaatattgg
gTATAGCTGTTAGAGAAAGTGGACGCGAGCTTGGAGTACTTGTATTCTTT
ATTTTGTTGGCAGTACTTTTATTCTCAAGTGCTGTTTATTATGCGGAAGA
TGGTGTACCAGGCACGAAGTTAGTCTCGATTCCAGGAGCTTTTTGGTGGT
CTATTGTTACTATGACAACAGTGGGATACGGAGACGAAGTTCCACAATCA
ATTCcTGGTCGTTTGGTCGGTGCAGTGTGCGCCATGACAGGTATCCTCGT
GATTGCAATGCCGATTCCTATCATTGTCAATAATTTCACACGACAATATC
AACGATTGAAACCAGCATCAAAATACTGGGAAGATTTTCAAGACACGCGG
AAATTATCCGGTGAGGGTACGGACGAAAACGGAAAAACAGACCGGAAAAC
TAGTCACGTGATTGGATTATATGAAGTAGACATTAATAAAAATGAAGCCA
AAAATGCAACGGTGGTTAGTAGTAACCATAGCAATCATGTAAATGGTAGC
ACAACCAAAAATAATGGTGACGTCACTGAAATCGGTTTACCGAATGGGAA
GGTTGAAATCGCCCATACAGCGCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030727XLOC_030727Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Potassium voltage gated channel proteinTCONS_00048278-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048278-exon-scaffold_142-1491911889:185198..185362TCONS_00048278-exon-scaffold_142-1491911889:185198..185362Clytia hemisphaericaexon
TCONS_00048278-exon-scaffold_142-1510915933:185198..185362TCONS_00048278-exon-scaffold_142-1510915933:185198..185362Clytia hemisphaericaexon
TCONS_00048278-exon-scaffold_142-1575043694:185198..185362TCONS_00048278-exon-scaffold_142-1575043694:185198..185362Clytia hemisphaericaexon
TCONS_00048278-exon-scaffold_142-1491911889:186425..187513TCONS_00048278-exon-scaffold_142-1491911889:186425..187513Clytia hemisphaericaexon
TCONS_00048278-exon-scaffold_142-1510915933:186425..187513TCONS_00048278-exon-scaffold_142-1510915933:186425..187513Clytia hemisphaericaexon
TCONS_00048278-exon-scaffold_142-1575043694:186425..187513TCONS_00048278-exon-scaffold_142-1575043694:186425..187513Clytia hemisphaericaexon
TCONS_00048278-exon-scaffold_142-1491911889:190070..190720TCONS_00048278-exon-scaffold_142-1491911889:190070..190720Clytia hemisphaericaexon
TCONS_00048278-exon-scaffold_142-1510915933:190070..190720TCONS_00048278-exon-scaffold_142-1510915933:190070..190720Clytia hemisphaericaexon
TCONS_00048278-exon-scaffold_142-1575043694:190070..190720TCONS_00048278-exon-scaffold_142-1575043694:190070..190720Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:185198..190720 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.208784	0	0	0.116043	0.929689	0.888622	0	0.851886	0	5.82089	8.52327	6.37951	3.41183	9.56445	6.488	0	0	6.54467	6.78105	0	3.01012	18.5961	7.03911	0	0	0.37233	0.00631235
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR003968K_chnl_volt-dep_Kv
IPR003972K_chnl_volt-dep_Kv1
IPR003131T1-type_BTB
IPR005821Ion_trans_dom
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0051260protein homooligomerization
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
Blast
[Close]
BLAST of TCONS_00048278 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 7.587e-78
Identity = 168/391 (42.97%), Postives = 249/391 (63.68%), Query Frame = 3 
Query:  246 KIDGDDKKPNELVTFNVSGRKFITTSHTLYNFPDSLIGTSENRAKLKRTKDGEIFLDRHAIVFESVLTFYQTG-IFEPPSQVNQNIFVGDIKYYELVEEAMQSGLK--GF-DNKVIPMPERLVQRKIWTLLEYPDSSFMARIVSMFSLLVIITSIVTFCWETVPEYNTNKVNYDDLSPGKQLTI----KILDD----IELFCIVYFTFEIILRFVCSPKKWSFMKDILNIIDIVSILPFYVTL---IFSMEG------SVSIYXXXXXXXXXXXXXXXXSRHSNEMKILGIAVRESGREXXXXXXXXXXXXXXXSSAVYYAEDGVPGTKLVSIPGAFWWSIVTMTTVGYGDEVPQSIPGRLVGAVCAMTGILVIAMPIPIIVNNFTRQYQR 1355
            + D DD +  E V  N+SG +F T   TL  FP++L+G  + R +       E F DR+   F+++L +YQ+G     P  V  ++F  +IK+YEL EEAM+   +  GF   +  P+PE+  QR++W L EYP+SS  AR++++ S++VI+ SIV FC ET+PE   +K     +      T+     I  D    +E  CI++F+FE+++RF   P K  F K+I+N IDIV+I+P+++TL   I   EG      + S+  LR +RLVRVFR+FKLSRHS  ++ILG  ++ S RELG+L+FF+ + V+LFSSAVY+AE     +   SIP AFWW++V+MTTVGYGD  P +I G++VG++CA+ G+L IA+P+P+IV+NF   Y R
Sbjct:   27 QADHDDHECCERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 417
The following BLAST results are available for this feature:
BLAST of TCONS_00048278 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA17.587e-7842.97Potassium voltage-gated channel subfamily A member... [more]
back to top