TCONS_00047471-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00047471-protein
Unique Name	TCONS_00047471-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	233

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00047471-protein ID=TCONS_00047471-protein|Name=TCONS_00047471-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
SLAHQTMPKKNSSWGQNSKAVEARERKANEKREEQTKKQKAVDDAYWKDD
NKLDGRKKERKDNAEQKKQDALKRKEEAKKLLEAEEAKLGGTSKKIPSGA
TKKVTQSEIDKVKEKEKRQQELLAQEKEKEQKKLSENPEMEEENPNIKMA
QMLAAEGAVEARSMNDAIGVLSISDKDAVDRHPEKRMKAAYLEFEERELP
RLKAEYSNMRLSQLKQMLRKEWQKSPDNPMNQR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030238	XLOC_030238	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00047471	TCONS_00047471	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR010422	Ccdc124

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 18..40
None	No IPR available	COILS	Coil	Coil	coord: 192..212
None	No IPR available	COILS	Coil	Coil	coord: 109..143
None	No IPR available	COILS	Coil	Coil	coord: 61..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..146
IPR010422	Coiled-coil domain-containing protein 124	PFAM	PF06244	Ccdc124	coord: 105..232 e-value: 9.4E-38 score: 129.6

Blast

[Close]

BLAST of TCONS_00047471-protein vs. Swiss-Prot (Human)
Match: CC124 (Coiled-coil domain-containing protein 124 OS=Homo sapiens GN=CCDC124 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.867e-46
Identity = 108/228 (47.37%), Postives = 159/228 (69.74%), Query Frame = 0

Query:    7 MPKKNSSWGQNSKAVEARERKANEKREEQTKKQKAVDDAYWKDDNKLDGRKKERKDNAEQKKQDALKRKEEAKKLLEAEEAKL-GGTSKKIPSGATKKVTQSEIDKVKEKEKRQQELLAQEKEKEQKKLSENPEMEEENPNIKMAQMLAAEGAVEARSMNDAIGVLSISDKDAVDRHPEKRMKAAYLEFEERELPRLKAEYSNMRLSQLKQMLRKEWQKSPDNPMNQR 233
            MPKK    G+N+K+  AR R+A  K     KKQK ++DAYWKDD+K   RK++RK+  E+++ D L+RK+E ++LLE E++KL GG + ++    + KVT+++I+    ++ + +E  A +  ++ K   E P   EEN N ++ +    EG+VEAR++ DAI VLS+++ +A DRHPE+RM+AA+  FEE +LPRLK E  NMRLSQLKQ+L+KEW +SPDNPMNQR
Sbjct:    1 MPKKFQ--GENTKSAAARARRAEAKAAADAKKQKELEDAYWKDDDKHVMRKEQRKEEKEKRRLDQLERKKETQRLLEEEDSKLKGGKAPRV--ATSSKVTRAQIEDTLRRDHQLRE--APDTAEKAKSHLEVPL--EENVNRRVLE----EGSVEARTIEDAIAVLSVAE-EAADRHPERRMRAAFTAFEEAQLPRLKQENPNMRLSQLKQLLKKEWLRSPDNPMNQR 215

The following BLAST results are available for this feature:

BLAST of TCONS_00047471-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00047471-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CC124	2.867e-46	47.37	Coiled-coil domain-containing protein 124 OS=Homo ...	[more]

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TCONS_00047471-protein (polypeptide) - C. hemisphaerica