|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047471 ID=TCONS_00047471|Name=TCONS_00047471|organism=Clytia hemisphaerica|type=transcript|length=1228bp CATCTCTTGCACACCAAACCATGCCAAAGAAAAACTCATCCTGGGGTCAA AATTCTAAAGCTGTTGAAGCTCGTGAACGAAAAGCAAACGAGAAAAGAGA AGAGCAAACCAAAAAGCAAAAGGCTGTTGATGATGCATATTGGAAGGATG ATAATAAATTGGACGGTCGTAAAAAAGAACGAAAGGACAATGCAGAGCAA AAAAAGCAAGAtgctttgaaaagaaaagaagaagccAAAAAGCTTTTGGA AGCTGAAGAAGCAAAGTTGGGTGGTACCAGTAAAAAGATTCCTTCAGGTG CAACCAAAAAGGTGACTCAGTCTGAAATTGACAAGGTCAAGGAAAAGGAG AAACGACAACAAGAATTGTTGGcgcaagaaaaagaaaaggaacaaaaaaa ACTGAGTGAAAACCCCGAAATGGAAGAGGAAAACCCTAACATCAAGATGG CCCAAATGTTAGCTGCTGAAGGAGCGGTTGAAGCGCGTAGTATGAATGAT GCTATTGGTGTACTCAGTATCAGTGACAAAGATGCAGTTGACCGACATCC AGAAAAACGTATGAAAGCTGCATACTTAGAATTTGAGGAAAGAGAATTAC CTAGATTGAAGGCTGAGTATTCGAACATGAGACTTTCGCAGTTGAAACAA ATGTTAAGAAAAGAATGGCAAAAATCTCCAGATAATCCAATGAATCAAAG GTGATAAAAATGTCGTTTTAATGTTGCTTTATCGATGGTTTTTTTGGTTG GACTGTACTATGGCAatgtcacaaaaggttggaccctTTACGACATTATC CACTCAAGATCTTctttttgctaacgatctgcttTTGACCTTTTTTGGTT CACTTTCATTGAGTACGAAGTAAAacgatttgattttgtttttgttcgaT ATACCAATGGAAGTGAATACCTGGTTAGGATGGCGAGTGACTTTTGAGAT TTTACGTAGCTGAAccagacaatcagggacaaaatacttggcacaaaagg gaaattcaccggggtgttttgaaaccacaatcgatttgtaagtgctctaa agtaggttcgaagggtagagttttaactctgagttttaacgctagactaa agacttaggaccttaggatctgaggatctgaggatccaaaagtttaaaaa tggtccagtagggcttgaaatatagcctagaaaccaataaatccctccca gatcgaaataatcgatgaaatcaagttg Run BLAST on NCBI protein sequence of TCONS_00047471-protein >TCONS_00047471-protein ID=TCONS_00047471-protein|Name=TCONS_00047471-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
SLAHQTMPKKNSSWGQNSKAVEARERKANEKREEQTKKQKAVDDAYWKDD NKLDGRKKERKDNAEQKKQDALKRKEEAKKLLEAEEAKLGGTSKKIPSGA TKKVTQSEIDKVKEKEKRQQELLAQEKEKEQKKLSENPEMEEENPNIKMA QMLAAEGAVEARSMNDAIGVLSISDKDAVDRHPEKRMKAAYLEFEERELP RLKAEYSNMRLSQLKQMLRKEWQKSPDNPMNQR Run BLAST on NCBI transcript from alignment at scaffold_13:4561..9628+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047471 ID=TCONS_00047471|Name=TCONS_00047471|organism=Clytia hemisphaerica|type=transcript|length=5068bp|location=Sequence derived from alignment at scaffold_13:4561..9628+ (Clytia hemisphaerica) CATCTCTTGCACACCAAACCATGCCAAAGAAAAACTCATCCTGGGGTCAA
AATTCTAAAGCTGTTGAAGCTCGTGAACGAAAAGCAAACGAGAAAAGAGA
AGAGCAAACCAAAAAGCAAAAGGCTGTTGATGATGCATATTGGAAGGATG
ATAATAAATTGGACGGTCGTAAAAAAGAACGAAAGGTATGGTGGAACTTA
CTTTCTGGCCTCTTACTGTTGCAGACTATTTGATTGATCTCAAGAATCAC
CGATTACTGAACACAGAAACATCAATCAAACATCAAAGTACCTTTTTCAA
GTCCTTAGTAAAATATTGAACCCATATTCTTGTATGTAAACAACATTGTC
tgaggaaaatttaaaaattagtATCTTAGAGATTTGATTCCAGAGGTCAT
TGCCATTGGGACCTTCCATATAGTAGTAACTGGCATCCCCGGTAGGTTGT
TTTTATCATAAAATCTTTTATAATACAGGACAATGCAGAGCAAAAAAAGC
AAGAtgctttgaaaagaaaagaagaagccAAAAAGCTTTTGGAAGCTGAA
GAAGCAAAGTTGGGTGGTACCAGTAAAAAGATTCCTTCAGGTCAGTCTCA
ATTTTCTTTCCCCTTCAAtgggccattttattttatatccatacaggcaG
GGGgctggacgaacatttccagagagtaacccgagaaaaatttccagagg
gtgtttttcatttttcaaaggaggtaaaagttattttaaaatttccaggg
ggtaaatcactgattTTAGTCCACCCTCACCTTAATGTATGAGAAGAATA
TTTCCAAgggttttttttccaaattttgccattttccaacaAGGGGTATT
Cagacattttcaataatttcttttttatttgaaaaggttaatccaccccc
tgtatggtttttaaAATGGAACAGTCCAATTCATACTATGTTTGTGATTC
AAAGTAAATATTTGATAGGAATTTGATATGAGCCTTCACGAGTTGTAACT
TTCCTTTTTTAGTTCGATTTTGTATCTttgagggggtttatctaaagaat
cctgcattactaaaaatagacaaaaagaacgacaaatttcatacaaaaag
acatatttcgccgtccacaaccccgcaaccccgaccgaaagtgactgtac
cacccttaGCGATTCATTCCCATtggtttatcacgggaattaactacatg
tggtctaaaagaacgacaaattacgcatgcgtattacaatgcaggatcct
tTGGAGGAACAGACTGTTTAACTgaataatacatgtttttttgacctacc
tccgggtaccccggtggaggttctataaattaacccatgtccgttcgttc
gtccgttcgtccgtccgtccgtctgttaccagcttttctcaggattggct
cattagttttgatgcaatgatgcaaaatggtaatgcccaaaatgtgacgg
agcctgattttcgagaaaaaaatatatttgggcaaatttgggccaaaaac
tgcctgaaaatagggttttttggactttgtgcaaaatcctgtctttacct
gtttctgattttttgcacaatgatgcataatggcaatgcctaaaatgtga
cggagccagattttcgaaaaaaaatatatttgggcaaatttgggccaaaa
actgcctgagaatagggttttttggactttgtgcaaaatcctgtcattcc
ttttttctgattttttgtacaaagatggagggcaagattctctaaagaat
ggctgaagtggtttttcccggaaaattcttattcgccttaaaaaacggat
tttcgtattttggggaaattccctttaaccaaataagaaaatatagcttt
tctcaatgttgactcattatttttttccgattttttgcacaatgatgcat
aatggcaatgcctaaaatgtgacggagccagattttcgaaaaaaaatata
tttgggcaaatttgggccaaaaactgcctgagaatagggttttttggact
ttgtgcaaaatcctgtcattccttttttctgattttttgtacaaagatgg
agggcaagattctctaaagaatggctgaagtggtttttcccggaaaattc
ttattcgccttaaaaaacggattttcgtattttggggaaattccctttaa
ccaaataagaaaatatagcttttctcaatgttgactcattatttttttcc
gattttttgcacaatgatgcataatggcaatgcctaaaatgtgacggagc
cagattttcgaaaaaaaatatatttgggcaaatttgggccaaaaactgcc
tgagaatagggttttttggactttgtgcaaaatcctgtcattcctttttt
ctgattttttgtacaaagatggagggcaagattctctaaagaatggctga
agtggtttttcccggaaaattcttattcgccttaaaaaacggattttcgt
attttggggaaattccctttaaccaaataagaaaatatagcttttctcaa
tgttgactcattatttttttccgattttttgcacaatgatgcataatggc
aatgcctaaaatgtgacggagccagattttcgaaaaaaaatatatttggg
caaatttgggccaaaaactgcctaaaaatagggttttttggactttgtgc
aaaatcctgtctttacctttttctgattttttgcacaatgatgcaaaatg
acaatacctaaaatgtggcgaagcccgattttcaaataacattttttccg
gccgaaaatgccggaaatatgccggaaaaactgtttttttggcattttct
caagattttatcattggtttttcctgatttttttgctcaaagatgcgtat
taacaatgcccaaaatatcgatttttaagaaaaaaaattttccggttgaa
aatgccggaaatcgccgtgtgtgcagattttcattggtttttttccttat
attcatttctatgttttttacacaaaaacattattgataacaatgcaagc
atgattcaattgtcaataaaacttatttttgcgaccagaactttctatat
tttttttcCCTACAGCCCTTCCCTGTCCCCCCAttaacaatcaatgatga
atttattgcgttatgcattttcgctaaatgctatattttctgactgattt
ttttcatttttctcctcgcattgctatctaactttcatcatcaggtaggt
ccattcagcatctaatCTAGcttgtttcttttataagcatagcgtttata
agcatatgcagactcagtttttggtacctaaacaatggctctattattgt
ttgagaacaatagaatgccgctaagcataatgcgaacCTGATATAGGAAT
AGACActtgcttgtaaaaaaaaacatgtagtatttttaaaattattgcca
ttttttagatttttgccaTTCTTAATCAATTTCATTAATGAAATGAAACA
ATGCTGATCACGCTTGAAAGAAACGTTGATTCCTGTAAAATGGTGTAGCA
TGTTAGGGAAGTAGCAGGGACGGTTAGAGATCATGATTTACGTATTTTTC
AAATAACAGGTGCAACCAAAAAGGTGACTCAGTCTGAAATTGACAAGGTC
AAGGAAAAGGAGAAACGACAACAAGAATTGTTGGcgcaagaaaaagaaaa
ggaacaaaaaaaACTGAGTGAAAACCCCGAAATGGAAGAGGAAAACCCTA
ACATCAAGATGGCCCAAATGTTAGCTGCTGAAGgtaaattttttcgaaaa
aaaatctttcgtaTTAGTCTTGAACTCTCACAAGGATCAAGCAATAGAAA
TATAAAGTAAAGAGTTAGAAAAAAGGGCATTCGTGTTTTGAACAACACTT
CGATAAAAAATGATACTTTCAAAATGATGTCACACCCTGGGGGAATTGGG
TGCGGGGACATGTTGCTGAGCAGGGTCCCTTTTTTTAGACTCTGAAGATA
TCttacagggtcccaaatttactaatttttcggatgtgtatctgacaggg
tcgacttttggttattctggacaattttcagggttgaaattagaaaatct
ttctattttttgtcttttttggaagagaaaaaagtataaaatcttAGAGA
AACAAGAGTGCTACTTTGAGAAACCGGCAAAGTATCATTGTTAATAAAGA
AACGCTTTGCTTGACGCTAAGCAATTAACGGTCAAAGTTAATTGGGCACT
CCAAGGACAGAATTGGCGCCCTTTCCTACCCTCTGATAGACAGCTTTatg
aaaagggagccttcgttTGCTACTTACTTTTACTTTACTATTATGGTTCT
TCTAATCTTAGGAGCGGTTGAAGCGCGTAGTATGAATGATGCTATTGGTG
TACTCAGTATCAGTGACAAAGATGCAGTTGACCGACATCCAGAAAAACGT
ATGAAAGCTGCATACTTAGAATTTGAGGAAAGAGAATTACCTAGATTGAA
GGCTGAGTATTCGAACATGAGACTTTCGCAGTTGAAACAAATGTTAAGAA
AAGAATGGCAAAAATCTCCAGATAATCCAATGAATCAAAGGTGATAAAAA
TGTCGTTTTAATGTTGCTTTATCGATGGTTTTTTTGGTTGGACTGTACTA
TGGCAatgtcacaaaaggttggaccctTTACGACATTATCCACTCAAGAT
CTTctttttgctaacgatctgcttTTGACCTTTTTTGGTTCACTTTCATT
GAGTACGAAGTAAAacgatttgattttgtttttgttcgaTATACCAATGG
AAGTGAATACCTGGTTAGGATGGCGAGTGACTTTTGAGATTTTACGTAGC
TGAAccagacaatcagggacaaaatacttggcacaaaagggaaattcacc
ggggtgttttgaaaccacaatcgatttgtaagtgctctaaagtaggttcg
aagggtagagttttaactctgagttttaacgctagactaaagacttagga
ccttaggatctgaggatctgaggatccaaaagtttaaaaatggtccagta
gggcttgaaatatagcctagaaaccaataaatccctcccagatcgaaata
atcgatgaaatcaagttg Coding sequence (CDS) from alignment at scaffold_13:4561..9628+ >TCONS_00047471 ID=TCONS_00047471|Name=TCONS_00047471|organism=Clytia hemisphaerica|type=CDS|length=2808bp|location=Sequence derived from alignment at scaffold_13:4561..9628+ (Clytia hemisphaerica) TCTCTTGCACACCAAACCATGCCAAAGAAAAACTCATCCTGGGGTCAAAA TTCTAAAGCTGTTGAAGCTCGTGAACGAAAAGCAAACGAGAAAAGAGAAG AGCAAACCAAAAAGCAAAAGGCTGTTGATGATGCATATTGGAAGGATGAT AATAAATTGGACGGTCGTAAAAAAGAACGAAAGGACAATGCAGAGCAAAA AAAGCAAGAtgctttgaaaagaaaagaagaagccAAAAAGCTTTTGGAAG CTGAAGAAGCAAAGTTGGGTGGTACCAGTAAAAAGATTCCTTCAGGTGCA ACCAAAAAGGTGACTCAGTCTGAAATTGACAAGGTCAAGGAAAAGGAGAA ACGACAACAAGAATTGTTGGcgcaagaaaaagaaaaggaacaaaaaaaAC TGAGTGAAAACCCCGAAATGGAAGAGGAAAACCCTAACATCAAGATGGCC CAAATGTTAGCTGCTGAAGGAGCGGTTGAAGCGCGTAGTATGAATGATGC TATTGGTGTACTCAGTATCAGTGACAAAGATGCAGTTGACCGACATCCAG AAAAACGTATGAAAGCTGCATACTTAGAATTTGAGGAAAGAGAATTACCT AGATTGAAGGCTGAGTATTCGAACATGAGACTTTCGCAGTTGAAACAAAT GTTAAGAAAAGAATGGCAAAAATCTCCAGATAATCCAATGAATCAAAGGT GATCTCTTGCACACCAAACCATGCCAAAGAAAAACTCATCCTGGGGTCAA AATTCTAAAGCTGTTGAAGCTCGTGAACGAAAAGCAAACGAGAAAAGAGA AGAGCAAACCAAAAAGCAAAAGGCTGTTGATGATGCATATTGGAAGGATG ATAATAAATTGGACGGTCGTAAAAAAGAACGAAAGGACAATGCAGAGCAA AAAAAGCAAGAtgctttgaaaagaaaagaagaagccAAAAAGCTTTTGGA AGCTGAAGAAGCAAAGTTGGGTGGTACCAGTAAAAAGATTCCTTCAGGTG CAACCAAAAAGGTGACTCAGTCTGAAATTGACAAGGTCAAGGAAAAGGAG AAACGACAACAAGAATTGTTGGcgcaagaaaaagaaaaggaacaaaaaaa ACTGAGTGAAAACCCCGAAATGGAAGAGGAAAACCCTAACATCAAGATGG CCCAAATGTTAGCTGCTGAAGGAGCGGTTGAAGCGCGTAGTATGAATGAT GCTATTGGTGTACTCAGTATCAGTGACAAAGATGCAGTTGACCGACATCC AGAAAAACGTATGAAAGCTGCATACTTAGAATTTGAGGAAAGAGAATTAC CTAGATTGAAGGCTGAGTATTCGAACATGAGACTTTCGCAGTTGAAACAA ATGTTAAGAAAAGAATGGCAAAAATCTCCAGATAATCCAATGAATCAAAG GTGATCTCTTGCACACCAAACCATGCCAAAGAAAAACTCATCCTGGGGTC AAAATTCTAAAGCTGTTGAAGCTCGTGAACGAAAAGCAAACGAGAAAAGA GAAGAGCAAACCAAAAAGCAAAAGGCTGTTGATGATGCATATTGGAAGGA TGATAATAAATTGGACGGTCGTAAAAAAGAACGAAAGGACAATGCAGAGC AAAAAAAGCAAGAtgctttgaaaagaaaagaagaagccAAAAAGCTTTTG GAAGCTGAAGAAGCAAAGTTGGGTGGTACCAGTAAAAAGATTCCTTCAGG TGCAACCAAAAAGGTGACTCAGTCTGAAATTGACAAGGTCAAGGAAAAGG AGAAACGACAACAAGAATTGTTGGcgcaagaaaaagaaaaggaacaaaaa aaACTGAGTGAAAACCCCGAAATGGAAGAGGAAAACCCTAACATCAAGAT GGCCCAAATGTTAGCTGCTGAAGGAGCGGTTGAAGCGCGTAGTATGAATG ATGCTATTGGTGTACTCAGTATCAGTGACAAAGATGCAGTTGACCGACAT CCAGAAAAACGTATGAAAGCTGCATACTTAGAATTTGAGGAAAGAGAATT ACCTAGATTGAAGGCTGAGTATTCGAACATGAGACTTTCGCAGTTGAAAC AAATGTTAAGAAAAGAATGGCAAAAATCTCCAGATAATCCAATGAATCAA AGGTGATCTCTTGCACACCAAACCATGCCAAAGAAAAACTCATCCTGGGG TCAAAATTCTAAAGCTGTTGAAGCTCGTGAACGAAAAGCAAACGAGAAAA GAGAAGAGCAAACCAAAAAGCAAAAGGCTGTTGATGATGCATATTGGAAG GATGATAATAAATTGGACGGTCGTAAAAAAGAACGAAAGGACAATGCAGA GCAAAAAAAGCAAGAtgctttgaaaagaaaagaagaagccAAAAAGCTTT TGGAAGCTGAAGAAGCAAAGTTGGGTGGTACCAGTAAAAAGATTCCTTCA GGTGCAACCAAAAAGGTGACTCAGTCTGAAATTGACAAGGTCAAGGAAAA GGAGAAACGACAACAAGAATTGTTGGcgcaagaaaaagaaaaggaacaaa aaaaACTGAGTGAAAACCCCGAAATGGAAGAGGAAAACCCTAACATCAAG ATGGCCCAAATGTTAGCTGCTGAAGGAGCGGTTGAAGCGCGTAGTATGAA TGATGCTATTGGTGTACTCAGTATCAGTGACAAAGATGCAGTTGACCGAC ATCCAGAAAAACGTATGAAAGCTGCATACTTAGAATTTGAGGAAAGAGAA TTACCTAGATTGAAGGCTGAGTATTCGAACATGAGACTTTCGCAGTTGAA ACAAATGTTAAGAAAAGAATGGCAAAAATCTCCAGATAATCCAATGAATC AAAGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00047471-exon-scaffold_13-1491911889:4561..4745 | TCONS_00047471-exon-scaffold_13-1491911889:4561..4745 | Clytia hemisphaerica | exon |
TCONS_00047471-exon-scaffold_13-1510915933:4561..4745 | TCONS_00047471-exon-scaffold_13-1510915933:4561..4745 | Clytia hemisphaerica | exon |
TCONS_00047471-exon-scaffold_13-1575043694:4561..4745 | TCONS_00047471-exon-scaffold_13-1575043694:4561..4745 | Clytia hemisphaerica | exon |
TCONS_00047471-exon-scaffold_13-1491911889:5039..5150 | TCONS_00047471-exon-scaffold_13-1491911889:5039..5150 | Clytia hemisphaerica | exon |
TCONS_00047471-exon-scaffold_13-1510915933:5039..5150 | TCONS_00047471-exon-scaffold_13-1510915933:5039..5150 | Clytia hemisphaerica | exon |
TCONS_00047471-exon-scaffold_13-1575043694:5039..5150 | TCONS_00047471-exon-scaffold_13-1575043694:5039..5150 | Clytia hemisphaerica | exon |
TCONS_00047471-exon-scaffold_13-1491911889:8120..8293 | TCONS_00047471-exon-scaffold_13-1491911889:8120..8293 | Clytia hemisphaerica | exon |
TCONS_00047471-exon-scaffold_13-1510915933:8120..8293 | TCONS_00047471-exon-scaffold_13-1510915933:8120..8293 | Clytia hemisphaerica | exon |
TCONS_00047471-exon-scaffold_13-1575043694:8120..8293 | TCONS_00047471-exon-scaffold_13-1575043694:8120..8293 | Clytia hemisphaerica | exon |
TCONS_00047471-exon-scaffold_13-1491911889:8872..9628 | TCONS_00047471-exon-scaffold_13-1491911889:8872..9628 | Clytia hemisphaerica | exon |
TCONS_00047471-exon-scaffold_13-1510915933:8872..9628 | TCONS_00047471-exon-scaffold_13-1510915933:8872..9628 | Clytia hemisphaerica | exon |
TCONS_00047471-exon-scaffold_13-1575043694:8872..9628 | TCONS_00047471-exon-scaffold_13-1575043694:8872..9628 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_13 | supercontig | scaffold_13:4561..9628 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR010422 | Ccdc124 |
Blast
BLAST of TCONS_00047471 vs. Swiss-Prot (Human)
Match: CC124 (Coiled-coil domain-containing protein 124 OS=Homo sapiens GN=CCDC124 PE=1 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 7.975e-30 Identity = 53/78 (67.95%), Postives = 67/78 (85.90%), Query Frame = 3
Query: 468 EGAVEARSMNDAIGVLSISDKDAVDRHPEKRMKAAYLEFEERELPRLKAEYSNMRLSQLKQMLRKEWQKSPDNPMNQR 701
EG+VEAR++ DAI VLS+++ +A DRHPE+RM+AA+ FEE +LPRLK E NMRLSQLKQ+L+KEW +SPDNPMNQR
Sbjct: 139 EGSVEARTIEDAIAVLSVAE-EAADRHPERRMRAAFTAFEEAQLPRLKQENPNMRLSQLKQLLKKEWLRSPDNPMNQR 215
The following BLAST results are available for this feature:
|